sh3glb2a (sh3glb2a,LOC107671032,LOC107754407)


Basic Information

Item Value
gene id sh3glb2a
gene name sh3glb2a,LOC107671032,LOC107754407
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2139230 ~ 2152391 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246147.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGTGTGAGGGAGAAGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGCTTTGGAACGAGGAGCTTGACAAAGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGTTGCAGCGGAGACATAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacaca
>XM_043246148.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGCTTTGGAACGAGGAGCTTGACAAAGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGTTGCAGCGGAGACATAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacac
>XM_043246149.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGTGTGAGGGAGAAGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGCTTTGGAACGAGGAGCTTGACAAAGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacaca
>XM_043246150.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGTGTGAGGGAGAAGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGTTGCAGCGGAGACATAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacaca
>XM_043246151.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGCTTTGGAACGAGGAGCTTGACAAAGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacaca
>XM_043246152.1
TTCGCGGCTCAGAAACCGTCGAAGGCAGAGACGCGCCGGCCTCAGCGGAGCGCCCGATGCCGCGGGGATTCCGCCTCTTTCTCCGCGCACGACATGGATTTCAACGTGAGGAAACTCGCTACAGATGCCGGGATATTCTTTTCGCGAGCCGTCCAGTTTACAGAAGAGAAACTGGGACAGGCTGAGAAGACCGAGCTGGACGCTCACTTTGAGAATCTGCTGTCCAGAGCTGACTGCACCAAAAACTGGACCGAGAAGATCTACAGACAGACCGAGGTTCTTCTCCAGCCGAACCCCGgTGCTCGCATCGAGGACTTCCTGTATGAAAAGCTTGACCGGAAGGTCCCGGCGCGGCCCACTAACGGAGAGATCTTGAGTCAGTTCATGCTGGAGGCAGCCAAGGAGTTCGGCTCGGGAACCCCGTACGGAAGCACCCTGATCAAAGTGGGCGACTGTCAGAGGAGGCTGGGCGGCGCTGAGAGAGAGTTCCTGCAGTCCTCGTCCATCAGCTTCCTCACACCCCTGCGCAACTTTCTGGAGGGCGACTGGAGGACCATTTCTAGAGAGCGGAGGCTGCTGGAGAATCGACGCTTGGATCTCGACGCCTGTAAGGCACGACTCAAGAAGGCCAGAGCGGCGGAGGCTAAAGCGGCGGCCGTCCCAGACTTTCAAGAGACGAGGCCGCGTAATTATGTGCTGTCTGCTAGTGCATCTGCGGCGGAGCATGAACTGCGCGTCGCTCAGACGGAGTTTGACAGACAGGCCGAGGTCACCAGACTGCTCCTGGAGGGCATCAGCAGCACGCACGTGAATCACCTGCGCTGTCTGTGTGAGTTCGTGGAGGCGCAGGCCATGTATTACAACCAGTGCCACAAATACATGCTGGAGCTGCAGAGAGAGCTGGGCAGTTGCAGCGGAGACATAAGATGCCCCGACTCGTCAGATGTGGGTTCCCCCGCGGATCCGTCCGCCTTCCCGTCGCAGAGCTCTCCTTCCGCGCTGGAGACGGACGCTCTGCAGATCGAGGAGGTCCAGCCGCCGGCCAGCGGCACGCGCACCGCCAAGGTGCTGTACGACTACGACGCTGCGGACTCCAGTGAGCTCTCGCTGAGGGCCGATGAGCTCATCACCGTGTACACAGTGCCTGGAATggactctgattggctgattggaGAACGAGGAAACCAGAAGGGGAAGGTGCCTGTTACATATCTGGAGCTGTTGAGCTAAAGAGagaacagacacagacacacacagacagacacagacacacacacacacacacagacacacacacacacacagacagacacacacacaca

Function

symbol description
sh3glb2a Predicted to be located in cytoplasm. Orthologous to human SH3GLB2 (SH3 domain containing GRB2 like, endophilin B2).

NR:

description
endophilin-B2-like isoform X7

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K21269 SH3GLB2; endophilin-B2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246147.1 True 1358 mRNA 0.58 13 2139230 2152391
XM_043246148.1 False 1345 mRNA 0.59 12 2139230 2152390
XM_043246149.1 False 1343 mRNA 0.59 12 2139230 2152391
XM_043246150.1 False 1334 mRNA 0.59 12 2139230 2152391
XM_043246151.1 False 1331 mRNA 0.59 11 2139230 2152391
XM_043246152.1 False 1322 mRNA 0.59 11 2139230 2152391

Neighbor

gene id symbol gene type direction distance location
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding upstream 5299 2106390 ~ 2133931 (+)
naif1 naif1,LOC107559603,LOC107753004 coding upstream 35324 2096159 ~ 2103906 (+)
si:ch211-51h9.7 NA coding upstream 67561 2069818 ~ 2071669 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding upstream 69942 2061541 ~ 2069288 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding upstream 80505 2055331 ~ 2058725 (+)
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding downstream 18120 2170511 ~ 2203097 (+)
lhx2b lhx2b,lhx2 coding downstream 171208 2323599 ~ 2331771 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding downstream 272928 2425319 ~ 2428603 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding downstream 275797 2428188 ~ 2431630 (+)
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding downstream 279503 2431894 ~ 2464382 (+)
G60279 rpl6 non-coding upstream 25897 2041502 ~ 2113333 (+)
LOC122350140 NA non-coding upstream 111902 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 136227 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 139762 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 186104 1952793 ~ 1953126 (+)
G60296 NA non-coding downstream 1080 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 6923 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 10916 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 40566 2192957 ~ 2204310 (+)
G60335 NA non-coding downstream 191545 2343936 ~ 2344169 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 99394 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 103250 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 119196 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 220859 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 920426 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1696223 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1772470 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1876912 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2952179 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3074561 5226952 ~ 5229608 (+)

Expression


Co-expression Network