rnf165b (rnf165b,rnf165,LOC107726876,LOC107569673,LOC107712483,LOC107704592)


Basic Information

Item Value
gene id rnf165b
gene name rnf165b,rnf165,LOC107726876,LOC107569673,LOC107712483,LOC107704592
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 713366 ~ 724970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246156.1
TGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGGATCTCATTTTAACAGGCATCAGCACAGTCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCCCAGGCCCAGATCCCTGTTGATTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGAATGAGCCATCACCTCGGCCCTGCGCACCAGCCAGCCGCGGCGTTACATCCACCCCTCAACCACATACCAGCACCACCGTTCCAGGACATCCCGGCCCCGCCCTTCCTACCTCAGGCTTTACACCAGCAATACCTCATTCAGCAGCAGATCCTGGAGGCCCAGCACAGGAGGATACTTCCACAGCCCAGCAGACATGCTCCAGACCGAACCCTTCCCCACCCGCAGACGCTGCGGCCGCCATATGAATACCCAACATCCATTCACATTCCCGCACCTCCGCCGGTGCCGCAGCAGCCACGCTATCTCGCTGAAGGAACAGACTGGGATCTGAGTGTGGATCCAGGCCTGCCGCAGTACCACGTCTCTCCCCTCACTCAACATTATCAGCATTACCTGACCTCTCCACGACTGCACCACTTCCCCAGGAACACCACCTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTATCCATATCCTCAGTTACATCTGCTGGCTCTCCAAAGCCTCAGTCCTTCTCGTCATGCGTCTGCCGTGCGGGAGAGTTACGAGGAGCTCCTGCAGTTGGAGGACAGACTGGGAAATGTAAACAGAGGGGCTGTGCAGACCACCATCGAGAGGTTCACCTTTCCTCACAAGTATAAAAAGAGAAGACCTCTAGAGCTGAAGATTGGCATGGATGAAGAGGAGCTCGACACGGATGAGAAATGCACAATATGCCTCTCGATGCTTGAAGACGGAGAGGACGTCAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCTTGTGTTGACCAGTGGCTGGCAACCAATAAGAAGTGTCCCATCTGCAGGGTAGACATTGAGACGCAGTTGTCCCCCGATAGCTGATGTCTCGTGTAGCACTAGCTAGAAGTCCTATTGTCTCTCTTCGTCCCCTCGTGGGTACTTTGCCAAATGTGTGTCATCTCCATCACCTCTCACCTCTGACCTTTGCCTTCTGAGCCAACTGACGATGTAGAACAGGGAAGAAGATAAGCGCTGAAGTGGAACCTGGACCGCGTCGAGCACGTGGAGAAGAACGAGTCTGTCGATGAAGAGGGTTTCAGTCAAAGtgctctgtatgtgtgtgtgtttaggtcgGCGAATGCCGCTCTAAAGCGATCTCAAATGAAGACCAACCAAATGTTCTCAGTGTTCAGTAGGTCACGGATGAAGCATTACAGCATGAACACCACAAAGTCCGACACATTACGCGTGGTTGGTCATGAACTTAAACGTAGTTGAACGAATcatttgtgaaacaaaaaacaaacaaaaacaaaaaaaacaaaacacaacggGAATCAAAGTCATTAGCGAAAGAGAGAAGCGCGAGAGTAGAACAATGAccctgtgtttaaaaaaagctctGTCGTCGTGTCTGTAATTATCGGAGGTGATGCTTGACGTCCGTATGTAACCGTAAGGCCAGGCTTGATATGAACCGTGACAGTCCGCATTATGTGCTCGTGATGCCTCCGAAACGTATCCACCAAATGCATGTTGAAGCGAGAGGCCGGGGTTCTTCTGACGAGAGGTCGATGTGCATGAGGACGTTTCCCGCGCGATATTCTACTAATCCTGAAGACACTGTGTTCTCGATGCGTCTCCGAAGTCACTACAAGTGAAATATGTACCTTAATGCCTGTAGCACAAGCACACGTTGAATAGTAACGGCATAACTCCGTGTTTCCATTCGCTCTGTGACTCGTGGTCTCGCTTGGTCGTAAAGCAGCATCTGTAGAGTCATAACGTGCATGAAACCTGTTTGCTGCCATTTCTAGAGGACATGACAAGGGAGTAAAGCCATTCGTTTTATAGAAACCAAACATAACTTTTCTAAGCTGTACTTCATGATCACTCTTCCTCGtttgatttcttcttttttcctacTGTTGCCAGCCTGTGTGCGGGCCTGGCACAGCTTCTCGACATAAGTAGCTGCAAtgctggaaaaaacaaacaaacaagttatTTATTGTCGTCTTAATGTAGTTAgtggttatttttgtaaatgcactCACTTTCTGATGAGGTCGTGTGATTGTTTCTCTTTCCCTGCTTTTGCATTTGCACTCGAGTTTCCTTGCGTATCGTGCActccatccaaaaaaaaaaatgaaaaagaaaaaagagagaagaaacgTGAAAAAAACCAACAAGGGAACAGACTTTTTAACAGCACAGTTTCTTTGCGTAACGCTAGTCGTCGCCTCACTGACCACTTTAAATGTACGTGACTGTTTTTTCGTAGCATATCGGATGTCTTTGTAGTGCGTTCGGCGAATTAACGTTGCTTTCGAAACTTTTCCCGAATTCAAGCGTTCAGCTGCTTGGAGGCCAAGAAGTTGGAAGCGTCTTCACCGTTTTTTGTAGCGTGTCAGTGAGCGTCCGCCGCGTGACCTTTCCCTCTCATCGTCCGTCTGCGTTTTATAGTTTACACATGATATTGTGCGTCGAAATGCCTTAAGTATTTAACAATCATAATTTATGACTAACTTTACCTACTATGGGTGCGTATTTAAGTTCTGAACTAGTATCGCAATGTAATCGgtcggtttatttatttacgtcaGCATAACGTGTGTATAAATACCTCATTGTGCTATACTTTAATGGGAGTGCTTTGCATGCGGTTGTACTTTAAGGGGCGTAAGTGTCAAAACAAGCTAAACAACCCCCTCCCCAGACCCCGACCCCGACCCGGACCCCGACTGAGGGCGTGCTGAAATGTGCTAGTATGTGGTGCTGTAGTTTTTTTGGTTACATTCCATTAATGCAATTTCAGCTGTGAGCTCGTAGGCAAACTGTTCAATGGACTGGAATCGTTTTGCATGTCTCTCCTGTTTTTTGCACTCTCGGCTTTGCTGCCCTCTCACTGGCATCCTGCGAACGTCGCCCGCTCGTCTCGTCGCTCTGAACCGAGCCGGCGATTCCAGGCCGTGaatctgttttcagtgttttcagtaGTGAGGAGTGAGTTCAGCGCTTACTGTGATTGATTATAGCTGCTTGTCTTGTGCCCAACTTTCGATTACAGCCGGCCATTGTGTGCTGTATTTTCAATCGGGATTTAAAGTGATGCTTATTTTTCCCCACGAGTAGCAGATTTCCTTTACTCTACGTATCGGTACTTCACAAGAGGGGCTTTAAATGTCTGAATGCAGGTCGTGTTTTGGTACATTCTAGCGTAGCTGCCGTACGTGTGTCATATTTTCGCGATTTTAGCGCGTCAGGTTATATAGCTTCGATCCCCCAAATATCAATCTGCCAATACGGTGTCGTGTTTTACACTAGCATCGGCCGATACGGCAGACGACTCTTATTTCCGCCGAAATAAGCGTTTTTGCTGCCATGCGGAACACCTGGAATACTCGTTATTTTCTACACACTTAGAAATTGTTGCGCcgatgtagaaaaaaaaaaaaaaaaatgacaaaaaaaagaacaatggctttatattttatgatttgtGTTTCTAGCCTGTGTAGCCTTAAAGTCTCTTGATTTGATCCATCTCTCCAGCAGATTTTGGACATAAGCAATAGTAGTATCATGTTTCGCTAACAGACTGAACCGTAGATCCTAAAGCACAAGCTCTGTAATGCATGTCTTTCTCAGGTTTTAATATGCGTATGAGAATGGATacatatgttaaaatattttaccataaatatttctgatgtttttctgctgctgacataaaaagaaaaaaaaaacaaaaaaaaataaataaatagttgaaTAACCTGCCAGTGAAAGGGAAGTGGCTCTTTGTATAAGACACTGCTGTGTGCTGTTACTGCGCAATGTTTTCTGACATGAATATTTTATAGCTCAAgtagaaaaatatgtattgacAATATTTAAGCAATAGCTTGGTGATTATAATGTATGATAACTAGATAAGTGTATattgcgtttaaaaaaaaagaaaaaaaaaagaaaatcttagaTTCACTTTTGGTGgattttgtactgtatttattactAATGATGATGCAAAAAGTTGCATAGCTTAACccaaattttctttcttttttaatttcttgtcTTGTATATGACCctttttgtatgtgttttttcaaataaaatgtcgAAAA
>XM_043246157.1
TGCATATGATCCCGCTgaatgtacattatttattcatccgtTTACAGTCTGTGTTCATCAAAGAGAAGATCTGAAGGATGGTGTTAGTTCATGTCGGATATTTGGTTCTTCCTGTCTTTGGCTCAGTGAGAAATAGAGGATCTCATTTTAACAGGCATCAGCACAGTCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCCCAGGCCCAGATCCCTGTTGATTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGAATGAGCCATCACCTCGGCCCTGCGCACCAGCCAGCCGCGGCGTTACATCCACCCCTCAACCACATACCAGCACCACCGTTCCAGGACATCCCGGCCCCGCCCTTCCTACCTCAGGCTTTACACCAGCAATACCTCATTCAGCAGCAGATCCTGGAGGCCCAGCACAGGAGGATACTTCCACAGCCCAGACATGCTCCAGACCGAACCCTTCCCCACCCGCAGACGCTGCGGCCGCCATATGAATACCCAACATCCATTCACATTCCCGCACCTCCGCCGGTGCCGCAGCAGCCACGCTATCTCGCTGAAGGAACAGACTGGGATCTGAGTGTGGATCCAGGCCTGCCGCAGTACCACGTCTCTCCCCTCACTCAACATTATCAGCATTACCTGACCTCTCCACGACTGCACCACTTCCCCAGGAACACCACCTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTATCCATATCCTCAGTTACATCTGCTGGCTCTCCAAAGCCTCAGTCCTTCTCGTCATGCGTCTGCCGTGCGGGAGAGTTACGAGGAGCTCCTGCAGTTGGAGGACAGACTGGGAAATGTAAACAGAGGGGCTGTGCAGACCACCATCGAGAGGTTCACCTTTCCTCACAAGTATAAAAAGAGAAGACCTCTAGAGCTGAAGATTGGCATGGATGAAGAGGAGCTCGACACGGATGAGAAATGCACAATATGCCTCTCGATGCTTGAAGACGGAGAGGACGTCAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCTTGTGTTGACCAGTGGCTGGCAACCAATAAGAAGTGTCCCATCTGCAGGGTAGACATTGAGACGCAGTTGTCCCCCGATAGCTGATGTCTCGTGTAGCACTAGCTAGAAGTCCTATTGTCTCTCTTCGTCCCCTCGTGGGTACTTTGCCAAATGTGTGTCATCTCCATCACCTCTCACCTCTGACCTTTGCCTTCTGAGCCAACTGACGATGTAGAACAGGGAAGAAGATAAGCGCTGAAGTGGAACCTGGACCGCGTCGAGCACGTGGAGAAGAACGAGTCTGTCGATGAAGAGGGTTTCAGTCAAAGtgctctgtatgtgtgtgtgtttaggtcgGCGAATGCCGCTCTAAAGCGATCTCAAATGAAGACCAACCAAATGTTCTCAGTGTTCAGTAGGTCACGGATGAAGCATTACAGCATGAACACCACAAAGTCCGACACATTACGCGTGGTTGGTCATGAACTTAAACGTAGTTGAACGAATcatttgtgaaacaaaaaacaaacaaaaacaaaaaaaacaaaacacaacggGAATCAAAGTCATTAGCGAAAGAGAGAAGCGCGAGAGTAGAACAATGAccctgtgtttaaaaaaagctctGTCGTCGTGTCTGTAATTATCGGAGGTGATGCTTGACGTCCGTATGTAACCGTAAGGCCAGGCTTGATATGAACCGTGACAGTCCGCATTATGTGCTCGTGATGCCTCCGAAACGTATCCACCAAATGCATGTTGAAGCGAGAGGCCGGGGTTCTTCTGACGAGAGGTCGATGTGCATGAGGACGTTTCCCGCGCGATATTCTACTAATCCTGAAGACACTGTGTTCTCGATGCGTCTCCGAAGTCACTACAAGTGAAATATGTACCTTAATGCCTGTAGCACAAGCACACGTTGAATAGTAACGGCATAACTCCGTGTTTCCATTCGCTCTGTGACTCGTGGTCTCGCTTGGTCGTAAAGCAGCATCTGTAGAGTCATAACGTGCATGAAACCTGTTTGCTGCCATTTCTAGAGGACATGACAAGGGAGTAAAGCCATTCGTTTTATAGAAACCAAACATAACTTTTCTAAGCTGTACTTCATGATCACTCTTCCTCGtttgatttcttcttttttcctacTGTTGCCAGCCTGTGTGCGGGCCTGGCACAGCTTCTCGACATAAGTAGCTGCAAtgctggaaaaaacaaacaaacaagttatTTATTGTCGTCTTAATGTAGTTAgtggttatttttgtaaatgcactCACTTTCTGATGAGGTCGTGTGATTGTTTCTCTTTCCCTGCTTTTGCATTTGCACTCGAGTTTCCTTGCGTATCGTGCActccatccaaaaaaaaaaatgaaaaagaaaaaagagagaagaaacgTGAAAAAAACCAACAAGGGAACAGACTTTTTAACAGCACAGTTTCTTTGCGTAACGCTAGTCGTCGCCTCACTGACCACTTTAAATGTACGTGACTGTTTTTTCGTAGCATATCGGATGTCTTTGTAGTGCGTTCGGCGAATTAACGTTGCTTTCGAAACTTTTCCCGAATTCAAGCGTTCAGCTGCTTGGAGGCCAAGAAGTTGGAAGCGTCTTCACCGTTTTTTGTAGCGTGTCAGTGAGCGTCCGCCGCGTGACCTTTCCCTCTCATCGTCCGTCTGCGTTTTATAGTTTACACATGATATTGTGCGTCGAAATGCCTTAAGTATTTAACAATCATAATTTATGACTAACTTTACCTACTATGGGTGCGTATTTAAGTTCTGAACTAGTATCGCAATGTAATCGgtcggtttatttatttacgtcaGCATAACGTGTGTATAAATACCTCATTGTGCTATACTTTAATGGGAGTGCTTTGCATGCGGTTGTACTTTAAGGGGCGTAAGTGTCAAAACAAGCTAAACAACCCCCTCCCCAGACCCCGACCCCGACCCGGACCCCGACTGAGGGCGTGCTGAAATGTGCTAGTATGTGGTGCTGTAGTTTTTTTGGTTACATTCCATTAATGCAATTTCAGCTGTGAGCTCGTAGGCAAACTGTTCAATGGACTGGAATCGTTTTGCATGTCTCTCCTGTTTTTTGCACTCTCGGCTTTGCTGCCCTCTCACTGGCATCCTGCGAACGTCGCCCGCTCGTCTCGTCGCTCTGAACCGAGCCGGCGATTCCAGGCCGTGaatctgttttcagtgttttcagtaGTGAGGAGTGAGTTCAGCGCTTACTGTGATTGATTATAGCTGCTTGTCTTGTGCCCAACTTTCGATTACAGCCGGCCATTGTGTGCTGTATTTTCAATCGGGATTTAAAGTGATGCTTATTTTTCCCCACGAGTAGCAGATTTCCTTTACTCTACGTATCGGTACTTCACAAGAGGGGCTTTAAATGTCTGAATGCAGGTCGTGTTTTGGTACATTCTAGCGTAGCTGCCGTACGTGTGTCATATTTTCGCGATTTTAGCGCGTCAGGTTATATAGCTTCGATCCCCCAAATATCAATCTGCCAATACGGTGTCGTGTTTTACACTAGCATCGGCCGATACGGCAGACGACTCTTATTTCCGCCGAAATAAGCGTTTTTGCTGCCATGCGGAACACCTGGAATACTCGTTATTTTCTACACACTTAGAAATTGTTGCGCcgatgtagaaaaaaaaaaaaaaaaatgacaaaaaaaagaacaatggctttatattttatgatttgtGTTTCTAGCCTGTGTAGCCTTAAAGTCTCTTGATTTGATCCATCTCTCCAGCAGATTTTGGACATAAGCAATAGTAGTATCATGTTTCGCTAACAGACTGAACCGTAGATCCTAAAGCACAAGCTCTGTAATGCATGTCTTTCTCAGGTTTTAATATGCGTATGAGAATGGATacatatgttaaaatattttaccataaatatttctgatgtttttctgctgctgacataaaaagaaaaaaaaaacaaaaaaaaataaataaatagttgaaTAACCTGCCAGTGAAAGGGAAGTGGCTCTTTGTATAAGACACTGCTGTGTGCTGTTACTGCGCAATGTTTTCTGACATGAATATTTTATAGCTCAAgtagaaaaatatgtattgacAATATTTAAGCAATAGCTTGGTGATTATAATGTATGATAACTAGATAAGTGTATattgcgtttaaaaaaaaagaaaaaaaaaagaaaatcttagaTTCACTTTTGGTGgattttgtactgtatttattactAATGATGATGCAAAAAGTTGCATAGCTTAACccaaattttctttcttttttaatttcttgtcTTGTATATGACCctttttgtatgtgttttttcaaataaaatgtcgAAAA

Function

symbol description
rnf165b Predicted to enable ubiquitin protein ligase activity. Predicted to be active in nucleus. Orthologous to human RNF165 (ring finger protein 165).
rnf165 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in motor neuron axon guidance and positive regulation of BMP signaling pathway. Predicted to act upstream of or within several processes, including forelimb morphogenesis; multicellular organism aging; and nervous system development. Predicted to be part of protein-containing complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: RING finger protein 165-like isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17821 RNF165; E3 ubiquitin-protein ligase RNF165

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246156.1 True 4384 mRNA 0.45 8 713366 724970
XM_043246157.1 False 4381 mRNA 0.45 8 713366 724970

Neighbor

gene id symbol gene type direction distance location
fabp1b.1 fabp1b.1,LOC107573351,LOC107726869,LOC107704576,LOC107579792,LOC107712467,LOC107661522,LOC103043953 coding downstream 82221 630354 ~ 631145 (-)
sprb spr,LOC107661521,LOC107569671,LOC107726883,LOC107712600,LOC107568099 coding downstream 102452 607450 ~ 610914 (-)
lzts3b lzts3,LOC107569677,LOC107712591,LOC107661533 coding downstream 111522 588798 ~ 601844 (-)
ubox5 NA coding downstream 126665 581029 ~ 586701 (-)
LOC122350794 LOC107661539,LOC107704586,LOC107726870,LOC107568101,LOC107581163 coding downstream 137188 572583 ~ 576178 (-)
spinb zgc:110697,LOC107726871,LOC107704578,LOC107577825 coding upstream 18223 743193 ~ 747336 (-)
lrrc2 lrrc2,LOC107697579 coding upstream 35248 760218 ~ 770520 (-)
srp19 srp19,LOC107704595 coding upstream 58678 783648 ~ 786422 (-)
nudt12 nudt12 coding upstream 78053 803023 ~ 809151 (-)
prdm6 prdm6,LOC107713557,LOC107726219 coding upstream 160222 885192 ~ 914375 (-)
G60036 NA non-coding downstream 52268 660435 ~ 661098 (-)
G60016 NA non-coding downstream 95894 615281 ~ 617472 (-)
G59739 NA non-coding downstream 161484 514767 ~ 551882 (-)
G59750 NA non-coding downstream 165455 545919 ~ 547911 (-)
G59688 NA non-coding downstream 476709 236074 ~ 236657 (-)
G60061 NA non-coding upstream 30654 755624 ~ 756643 (-)
G60079 NA non-coding upstream 91491 816461 ~ 820768 (-)
G60085 NA non-coding upstream 107757 832727 ~ 835131 (-)
G60080 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107726216,LOC107704598,LOC107573349 non-coding upstream 120449 845419 ~ 852159 (-)
G60112 NA non-coding upstream 150989 875959 ~ 876869 (-)
ccl27a NA other downstream 142393 565886 ~ 570973 (-)
csgalnact1b LOC107712620 other upstream 7823 732793 ~ 739372 (-)
G60098 NA other upstream 410431 1135401 ~ 1138152 (-)
commd10 commd10,LOC107728250,LOC107663591 other upstream 415728 1140698 ~ 1159286 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 624201 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 836576 1561546 ~ 1606609 (-)

Expression


Co-expression Network