crb2b (LOC107754408,LOC107699666,LOC107560064,LOC107568009)


Basic Information

Item Value
gene id crb2b
gene name LOC107754408,LOC107699666,LOC107560064,LOC107568009
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2170511 ~ 2203097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246164.1
tacagacagagaAGTGGATGAAGATTTGACAGCCAGCAGGCGAGGGTTTGATAGGAGCAGGATAAAGGGTCGTCCTGGTAAACTTCCACGCCGTGTTTTCCATCAAACCGCGGAGAGTAAAGTCGTCCGCAGCGGCGGGCAGGAGCTGACTCTCGCCGGATGAGAGCGCGATGATGCGGGCAGAGTTCAGCGCCGAGCCGCGGGTTTAGAGGCTGGAAGTCCATCATCTCTTCAGGACATGGAGCTTGGAGGGATATATTCACGATACAAAAGAGCAGTCCTGTTGTCATTGATGTTCAAACTGGGTCTGTTCTGCACGGTCACGTCTGACGTGTGTCTGTCCTCTCCTTGCCTAAACAACAGCACCTGTGTCCCGTCTCTGACCGGATACCTGTGCCTCTGCTCTCTCACCCCTCCTCTATTCGCCGGTGAGCACTGTGATCGTTTATACGACCCGTGCGAAAGCGCAGGCTGTCCGTCCAAATGCTTCGGCGCCGCGGGAACCAACAACTACACCTGTGCGTGTCCCGACGGCTTGGACGGCCCCAACTGCACCCGAAACATCAACGAATGTGAGAGCAACCCCTGCGCGGGACTCAAGAGCTACTGCATAGACGGAGTCAACGGATACTCGTGTCACTGTCCCAGTGGATACAGCGGGGACGACTGCGGGACGAGGGTGCGAGACTGCGCCGATGAGCCCTGCTTTAATAACGCCTCCTGCGTTTGGACGGCGAGCGGCTACGAGTGCCGGTGCGCCGCGGGGTTTCAGGGTCAACACTGCGAAGAAGACATCGACGAGTGTCTGTCCCAGCCCTGCAGGAACGGCGCCATCTGTCAGGATGGGATTGACCTGTATCAGTGCTACTGCGTACCTGGTTTCCAAGGTTACCACTGCGATATTGACATCAACGAGTGCGCGTCCCAGCCCTGCGAGAACAACGGGACCTGCGTCAACGGGAAGGACCGCTACAGCTGCGAATGCCTCATTGGGTTTACAGGAGTGAACTGTGAAGTGGATGTTGATGAATGTGAGGCGGATCCCTGTCAGAACGGTGCCATCTGCCACGATCACGTGGGTCTGTACACCTGCAAGTGTGTGCCGGGATACGAGGGCATTAACTGTGAGCTGGACATCAACGAGTGTGACAGTTCACCCTGCCAACACGGAGGAACATGTCTGGATAGGGTGAACGGCTTGGAGTGTGACTGCGCTGGCACTGGATTCGTGGGCTCTTTCTGTGAAGAGGACATACCCGAGTGTGCGTCTGAGCCCTGCCAGCACGGCGCCACCTGCCAGGAAGGAGTCAACCAGTACACCTGCCTCTGCTGGCCTGGCTACGAAGGCGAGAACTGTGAGCTTGACGTGGACGAGTGTGAAACGCAGCCGTGTGAGAACGGAGGCGAGTGTCTCCAGCGCTCCGAGTCCAGACACTACCGAGTCCTGGCCGATCTGGACACGGACTTCAGCTTCGCGAGCGCCGCCGGGTTCCTGTGTCTCTGCCGGGCCGGGTTCACAGGCGACGACTGTTCGGTTGACGTGGACGAATGCGCGTCCGGCCCGTGTGAAAACGGGGGCAGCTGTGAGGATCTGGTCGACGCGTTTCGCTGCTCGTGTCCGGCGGGGTTCAGAGGTGTGGTGTGTGAGATTAACCTGGACGAGTGTGAGAGCGATCCCTGTCAGAACGGCGGCCGCTGTGAAGACTCCATCAACGACTACACGTGTCACTGTCCTCCTCCCGCTCCGGACCAGCTGCCCTGGGGCGGTCACGACTGCGACGTCCCTCTGACCGGCTGCGTGCCTGACCCCTGCGTGAACGGCGGCGCCTGTGTGCCTTCTCTGCTCGGAGACCAGCATCGGCACACCTGCACGTGTTCTTCAGGCTTCCACGGAGACGCCTGCCAGACCTCCACCACCTTCTCTCTGACCGGAGGTTATCTGCTCATCGAGGTCCCGGGTATCAACAGGACATCCCAAGCACCAAGCGTCCAGCTCCGGTTCAGGACGACCTTGCCGGATCTAATTCTCTTCTTCCGGGGAAGTCAAGAGCACTTCTTCGTATTGGAGCTAATCGGCGGAGAGCCGCACTCCAGAGCCGAATCGGGAGACTTAAAGCTGGCCGTGCAGTTAAACAGGGATTTCAGCGACGGGTTCTGGCACGAAGTCTTGGTCAGTGTGGATGAGAGACTGATTCTGACTTCTCTGTCGGACGGCCTGAGCACAGCCAGCGACGGAGGACACAACCAGCTCCTGTCCTTCCAGCCGCTGGGTTTGGAGAGACTGCGCCTCGGCGGGGTGCCGCGGGAATACCTGAACCGGACCGCTTCCAGGACGGGATTCCTGGGCTGTTTCGAGGATCTGCTGGTGGATTCTCAGCCGGTTCTTCCCGAGAGCTTCGCTCCGCAGCCGGACGTAACGATGGGCTGTGAGAAGAGCGACTGGTGCGGGCCGGAGCCCTGTGCCGACCGCGGACGCTGTGTGGATCTGTGGTCAGAATACAGGTGCGACTGCCACAGGCCCTTTCACGGACACAACTGCTCCGAAGAGTTCACTTCATGGACTTTCAGTCCGGAGCGCAGCAGGAGCTTCGCTGCGTTTCCCATCATGCAGCAGCACACCGGTGACGTGAGCGTGTCTCTGTGGCTGAGATCACGTCAGCAGAACGGCCTGGTCCTTCAGCTCCAGCGCGACAATCAGGCTTACCTCACCGTTTTCCTGAACAACGGCTCATTACACGTCATGATACACAACTCCATCAGAAGAGCCTCCAGCTTCCTCACTGATGGGGAGAAGGTCTTTGTTTCCGTCAGCAGAGAAGGAggctttatattatataaccaAACGCAGCAGGTTTTTACTCCCACAAAGCTGACTGGGTTTGAGGTGGAAGCTGGAGACGTGGCGTATCTCGGTGGGCTTCCTGAAGGAGAAAACAGCGCTCAGTGGGGTGGATATTTTAAGGGCTGTCTGCAGGACGTGCGTATAGACGACACACAGCTGTTCATGTACTCCGGCAGCATCAGATACAAACCACAGCATCCCAGCTACTTACCCAGAAACTCCTCTAATGTGCTGGAGGGCTGCGCCGGAGACCAGACCTGCAAGACGAAGCCGTGTCAGAACGGAGGGAAATGTGGGGTGCTCTGGAATGACTTTGTGTGTTCGTGTCCGCTAAACTTCTCTGGGAAAACGTGCGACACTCGCGTGTGGTGCATCAGCAATCCGTGTGACTCTGGGACTCAATGTGTGGACTTACCCGACGGGTACGAGTGTTTAGCCAACGCCACGTTTGAGAACAACGCTTTGAGGTTCAGCGCCACCGGCTCCTTGTTCCTCCCTGTGACGAGCATTTCGATGCAGCTCCGGACACGCGAGGACAACGGGACACTGTTGCGTGTCTCCAGCCGCCTGGAGTTCTTCTGCATGGGACTCCTCAACTCCTCCCTCATCGTTAAGTTTCGCGACGGGAACAGTCTGGAGGTGCACGCCTTCACCAGCGACGTCCTCGTCTCGGACGGAGACTGGCACCAAGTGGAGCTCTCCTTGTCCAGCTCCAGGACAGCGGCGTCTCGCTGGCACCTTTTGGTCGACGGACGAGCGGCCGGATTCAGTTCGGATCCCGCTGGGAACATGGACTACTTCAACTCCTCCAGCGTCTGGCTGGCGGAGAACTACACTGGCTGTCTGGGCGAGGTGCGCATCGGTGgcgtttatttaccattttcgGGCCCCCTCGAGGATGCGCCTCAAGTGTCCCAGTTCACGCGGATCGGGGGGATTTCGGAGCCTCGGCTGGGATGTACCAGCTCCTCCTCCTGCGTTTCGGATCCGTGCCTGAACAACGGCACCTGCACGGATCTCTTCAATCTGCTGTCCTGCGAGTGCGGCCCGGGATGGACGGGCGAGCGCTGTCAGGAGAACGTGGACGAGTGTGGCTGGCAGCCCTGCATCCGAGGGACGTGCCGGGATCTTCCGGGGGACTACGAGTGCCAGTGCTCTTCCGGATATGCCGGGAAGGACTGTGAGCTGGAGGCGGATATGTGCACCGAGCATCGCTGTCAGAACGGAGGCTCGTGTTTAGCTTCTGTTGCGGGATACACCTGCATCTGTCCACCTGATCACACCGGACCGCTCTGCCAGTGGCGTTTTCCTCCTCAGCAGTGTGATGTGGATATACAGTGTGAACACAAAGGCGTCTGCAGTGAAGGATCATGGGGAGTGAAGTGTGTCTGCAAACCGGGCTTCACCGGAGACAGATGTGAAGTGGACATAGACGAGTGTGAGTCGAACCCGTGTCGCAACGGAGGCAAGTGTGTGAACAGACACAACCGCTacctctgtgagtgtgtgtccgACTTCAGCGGAGAGAACTGTGAGAACACGaagcagcagcagcaggagcgTGTGCCGTGGCTGATGGTGGCCGTCCCGCTGGCGTCTCTCGCTGTCCTGCTGGCCTCGGTCGGGATGGTTTGTCTGGCTCTCACGGCCCGGAAGAAGCGCCAGTCGGAGGGAACCTACAGCCCCAGTCAACAGGAAGTAGCTGGAGCCAGGCTCGAGATGGGCAGCGTGCTGAAGGTGCCTCCAGAGGAGAGACTGATCTGACCTCGGTCTGAACACACATCAAACCAGGGACGCTTTAAAGCAGCAGAGCACACAGATCTGGCTTTTATGTGTCCAGACATGTTGAGCAAAGCTGTGTGTGCCTTCCACGGAAGGATAATGGAGCTGAACGCTCACTTTTACCACTTTTAGTCAGAGAGCCGCGGGCAGCTTGAGGCACTTAGAGGAAACCAATGTGAGAAATAGCAACTGTGACCACTTTCTATCCCATatggcaaaaaatatattttcaaaatattaaaaaaaaggtccaaAAACTCCTATTCActaagaaatgctttaaaatacatttgttggaatattttttttaccaatatatatatatattttgcatattatattgctattgcatattatattttgcatatttttggagatattttttttttaactatcgataaaatatatttaaattttaaatacatgttgCCCTTCATGTAGTTCAATCCATcataatatatacattgtaCTTTTTTGAAGGTGCCATTTTTGTTGAA

Function

NR:

description
PREDICTED: protein crumbs homolog 1-like isoform X1

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0003094 glomerular filtration biological_process
GO:0048793 pronephros development biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16681 CRB; protein crumbs

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246164.1 True 5121 mRNA 0.56 14 2170511 2203097

Neighbor

gene id symbol gene type direction distance location
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding upstream 18120 2139230 ~ 2152391 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding upstream 36580 2106390 ~ 2133931 (+)
naif1 naif1,LOC107559603,LOC107753004 coding upstream 66605 2096159 ~ 2103906 (+)
si:ch211-51h9.7 NA coding upstream 98842 2069818 ~ 2071669 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding upstream 101223 2061541 ~ 2069288 (+)
lhx2b lhx2b,lhx2 coding downstream 120502 2323599 ~ 2331771 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding downstream 222222 2425319 ~ 2428603 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding downstream 225091 2428188 ~ 2431630 (+)
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding downstream 228797 2431894 ~ 2464382 (+)
gcn1 gcn1,LOC107552181 coding downstream 261946 2465043 ~ 2508114 (+)
G60323 NA non-coding upstream 5269 2163307 ~ 2165242 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding upstream 8467 2159314 ~ 2162044 (+)
G60296 NA non-coding upstream 14117 2153471 ~ 2156394 (+)
G60279 rpl6 non-coding upstream 57178 2041502 ~ 2113333 (+)
LOC122350140 NA non-coding upstream 143183 2024562 ~ 2027328 (+)
G60335 NA non-coding downstream 140839 2343936 ~ 2344169 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding downstream 204998 2408095 ~ 2422217 (+)
G60347 NA non-coding downstream 317733 2520830 ~ 2524134 (+)
LOC122351006 NA non-coding downstream 353933 2557030 ~ 2559048 (+)
G60361 NA non-coding downstream 407220 2610317 ~ 2612227 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 130675 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 134531 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 150477 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 252140 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 951707 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1645517 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1721764 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1826206 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2901473 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3023855 5226952 ~ 5229608 (+)

Expression


Co-expression Network