opn7d (opn7d,LOC107570009,LOC107664480,LOC107755598,LOC107678369,LOC108426644,LOC107752573)


Basic Information

Item Value
gene id opn7d
gene name opn7d,LOC107570009,LOC107664480,LOC107755598,LOC107678369,LOC108426644,LOC107752573
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22459937 ~ 22493964 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246168.1
AGCTAGGAGTGAAAGATACAGAGGGGGAGGGAGAatagagagtgagagtgtgctGTTAGGTAGACAACGAGCCTCAGTGTGTCTCTTGCCATGCTTGAACTGGCAGCGTTTGGACTGAGCCGCTCCACGCCGCACGAGAAaaacaattgtgtgtgtgtgtgtgtgcgtgctgaaTGAGTGAGTCCAGCCCGATGCGCGCCACACCTCTGCAACTGTCCGTCCGAACTCTCCTCACTCCCTCGCGGACGCGTGTGTGAGGACGGACGCATCCTTCTCGCCTCTCCTGCCGGAGTTTgcccgccgccgccgccgcctgTGCCCTGGAACACCTTTGGCCTCCATGAGTGCAGCTGAGGAAATCCAGCCTCTCCCCGGAAGatgGGAAATACCACGGAAACTTCCCATTTCGTTTCCAAAATCCCAAAGGAGCACGATGTCTTCATGGGTGCTTTATACACGACCTTCTgCATTCTGTCACTCTTGGGAAACGGCATCCTGCTCCTTGTTGCGTATCGTAAGAGATCATCTCTCAAGCCGGCAGAATTCTTCATCATAAACTTATCTATTAGTGACCTTGGGATGACAGTTACTCTCTTTCCTTTGGCGATCCCATCCGCCTTTGCTCACAAGTGGCTGTTTGGAGAGCTGACATGTTTATACTATGCTGTATGTGGCGTCCTCTTCGGCTTATCCAGCCTGACAAATCTCACAGCTCTGTCGTCCGTCTGCTGCCTCAAAGTCTGCTTCCCAAACTACGGTAACAAGTTCTCCTACTCTCACGCCTGTCTGATGATAGTGGGGGTGTGGTGCTATGCCATGGTGTTTGCTGTAGGTCCCTTGGCAAATTGGGGTCACTATGGCCCTGAACCTTACGGGACAGCATGCTGCATAGACTGGTATGCACCAGGCCAGGACGCTCTGTCCATGTCCTACATTATCTGCCTCTTCCTCTTTTGCTATGCCCTCCCTCTTGCCATCATCCTCCTCTCCTACATACTGATCCTCATCACTGTATGGGGGTCACGACAGGCAGTACAGCAACATGTTTCACCCCAGACCAAGACAACAAATGCCCATATTCTTATTGTGAAGCTTTCAGTGGCTGTGTGCATCGGTTTCCTGACTGCCTGGAGCCCTTATGCTGTTGTAGCAATGTGGGCCGCATTTGTGGAACCCAGTAAGGTTCCCCCTATAGCCTTTGCATTTGCAGCTATCTTTGCCAAATCCTCCACCACCTACAACCCTGTGGTGTACCTGGTATTTAAGCCCAACTTTCGCAAATCTCTGAGCAAAGACACCGCTCAGATTCGCAAACGAATATGTTCCAGCCCGTGCAAAGGAAGCCCTGTGCCTGGTGAGAAGGATCTTCAACGGCAAACATCTCTACGCTGCAACAAGGATGCTAGCAACTCCACACGACTCTCCAATGGCCTAGCGGACAGCCATGGGGCTTGTCTTCATTGCACAGAGGCAGACCCTCAAAGGACTGCCCGTGTGCTGATCGGTACATCCTGCAGCGAGGTGACTGTGAGTCAGCTGCCGGAAAAGATGCACGCTGACCTTCTGTGAAGGACCTGTAGGCTCTCCTCATGCCATCCCGAGGACAAACGTTAGGAATAGATGGATGAGTGACCTCAAAATGAAACTTCTGGCCACTAGAGATAAGCTTGAGACAAGCTGTGGTCACTTCTGATACTGATGTCACGTGTTAGGAGCTGCAGAACAATTGACCCTGCACTAAGTCCCGCCTTAAAAAAGGTTACTGACCAGTAGCAGCTGTCTGCAGTTGTTTCAGACTAGCTTGTGCTATTTTAGTGAAAGTCTATTCACAGAAATGTGTAATTCGAGTAAGGCATAAGACAAGTTACATATATGAGGTAAGCAGCTGCAAAACATTTTGTGGGTTTCATTACATCAGTAGTCAGTTGTACCAAGTGGTTTTTTCTGTCcaactttaaattataataactgTGAACAATTTATCCatgcatatgtttattttatttttttttatcatttagttaAATGGCCCCAGTATCGACTATGCTGGACTTCAATCATTTTGTTCACTTAAACCACGCAAATCAAGTCAAGCTGTGATTAAGTCATTACTGGCAATTATATGCAGGGTAGAATGAGTGACATTTATCACTATTTAAACTGACCTAAAAGCAAATCATTTGTTAAGTTAGATAGTTTACATTGTATCAAATtggacattttgaaaacatttggatttgttttaaattgttccTATGGGatggttttttttaaggcttgTCTGAGCCAAGGAGTTGGTGTCGGCTTGTCGCTTAACACAGTCCTATTGCTCCTGCTGGTAGATTGATATTGTGGTGGTTATCTGATATACCACAAATCCCCTAGACTGGTCAGCTGACAGAATATTTGATTCTTTGATTGTTTTAGCTGTCAAGGTGAAATTCCTTATCTGGTgccccaaaataaaacaaaaaaagctggTATTAAACAGTACTACTTTCTCTACTAAGGAAGTTAATATggaccagcaactgtttggtttcttaaaattttctgttcaaaataataaaagaaacttttacgtgaattattcttttaaaggggtcatatgatgtgatataaaatgttcctttctctttggagaaTGACAACCTAAAGTTGCacagactaaagtctcaaaaccaaagagatattctttataagtTATGACTTACacaagttatgacttgtccacaaCCTACTAAATTGGCTTGTTTAAACATGCCCCCACTTTTGTACGtaacagagtgggtttattttcaaaaaccgtctaaatgtttacacaaagaaagaaggcggagctattattctcgctgtggtgttgctgcgggcgccatgttctggagacgccgtgtgtcattgtgaaagtgaagctactttgtttgtgctgcCAAAAGAGGAGAGAAAACTAGAAATCGTTggttaagttgtgtttacaaCACTTCTCTAGAACAGTTCAACACATAGATTAAATTTATAAAGAACTGATTTCTGAATGCTGGCTGTACACAAAGACTATACAGTAGAGCAAACTTTAAgtgaagttttctttttttaaagaatctgtTACTTACTACACAAACTTAAATTTTGAGCATTGTAGAGTAAtgcttattgtttttaatttctctgATCACGAATGCAGatatggtgttatgtttacaaaGCGCGAtgcataaaaagacagtactaagtcATTGTAATTAGTAATTATATCCCCACTGGGTGCAACAAACGCCTtgtttgtaatgtattttattgtttttgtgtgataGCAC

Function

symbol description
opn7d Predicted to enable G protein-coupled photoreceptor activity. Acts upstream of or within phototransduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; heart; integument; and testis.

NR:

description
PREDICTED: opsin-5

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246168.1 True 3317 mRNA 0.44 7 22459937 22493964

Neighbor

gene id symbol gene type direction distance location
frmd3 frmd3,LOC107678471 coding upstream 21566 22395147 ~ 22438371 (+)
gkap1 gkap1,LOC107664507,LOC107678454,LOC107553117 coding upstream 65935 22385203 ~ 22394002 (+)
c8h9orf64 zgc:136564,cunh9orf64,c5h9orf64,LOC107757431,LOC107664574,LOC107553132 coding upstream 77193 22379403 ~ 22382744 (+)
hnrnpk hnrnpk,LOC107757432,LOC107752553,LOC107678442 coding upstream 81491 22370722 ~ 22378446 (+)
agtpbp1 agtpbp1,LOC107757430,LOC107752548,LOC107562637,LOC107678371 coding upstream 141123 22290751 ~ 22318814 (+)
LOC122349889 LOC107748971,LOC107710781,LOC107678464,LOC107698851,LOC107595755 coding downstream 47834 22541798 ~ 22549058 (+)
LOC122351043 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574 coding downstream 60903 22554867 ~ 22558195 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding downstream 153884 22647848 ~ 22659247 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding downstream 167185 22661149 ~ 22673282 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding downstream 179925 22673889 ~ 22709558 (+)
G66024 NA non-coding upstream 171090 22288308 ~ 22288847 (+)
G66022 NA non-coding upstream 174505 22283734 ~ 22285432 (+)
G65998 NA non-coding upstream 216644 22010649 ~ 22243293 (+)
G66183 NA non-coding downstream 18215 22512179 ~ 22513245 (+)
G66189 NA non-coding downstream 36289 22530253 ~ 22531750 (+)
G66261 NA non-coding downstream 305675 22799639 ~ 22800154 (+)
LOC122350789 NA non-coding downstream 415683 22909647 ~ 22911382 (+)
LOC122350915 NA non-coding downstream 736079 23230043 ~ 23231024 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 339141 22119913 ~ 22120796 (+)
G66010 naa35,LOC107757435,LOC107752550 other upstream 342103 22116283 ~ 22117834 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other upstream 495374 21963465 ~ 21964563 (+)
G65995 NA other upstream 498092 21949888 ~ 21961845 (+)
G65992 LOC107553157,LOC107661339 other upstream 519013 21939146 ~ 21940924 (+)
LOC122350000 ddx51 other downstream 38504 22532468 ~ 22540233 (+)
mfsd2al2 NA other downstream 221415 22715379 ~ 22723908 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other downstream 230618 22724582 ~ 22727444 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other downstream 405472 22899436 ~ 22925768 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 480031 22973995 ~ 22987162 (+)

Expression


Co-expression Network