rap1aa (rap1aa,rap1a,LOC107594522,LOC107679791,LOC107556321,LOC107751450,LOC101074250)


Basic Information

Item Value
gene id rap1aa
gene name rap1aa,rap1a,LOC107594522,LOC107679791,LOC107556321,LOC107751450,LOC101074250
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13545306 ~ 13551399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246206.1
TTAAAGTACTTATCGTTGATTGTGTCCCTTTAACTCTTTAGTGACTGTAACGTGCCAGGCCAGCCTTCCGCGCGCTGCAGTGACGTTTGCATCCGCGAGAGTGACCGGAGTCTGAGCGCGCGGCGGAGCGGCGGGACACGGCCTCAACAGAGAGACCCACCATGCGTGAATATAAGCTTGTGGTCCTGGGCTCTGGAGGCGTGGGGAAGTCTGCACTGACAGTTCAGTTTGTACAGGGAATATTTGTTGAAAAATATGATCCCACAATAGAAGACTCGTATAGAAAGcaagttGAGGTTGATGGGCAGCAGTGTATGCTAGAGATCCTGGACACTGCTGGCACAGAGCAGTTCACAGCGATGAGGGACCTGTACATGAAGAATGGGCAGGGTTTCGCTCTGGTTTACTCCATCACAGCACAGTCCACCTTTAATGACCTGCAGGACCTACGAGAGCAGATTCTGAGAGTGAAGGACACAGAGGATGTGCCAATGATCTTGGTTGGAAATAAGTGTGATTTAGAGGATGAGAGGGTTGTTGGGAAAGAGCAGGGTCAGAATCTTGCTCGTCAGTGGAGTAATTGTGCCTTTCTAGAATCTTCTGCCAAATCAAAGATCAACGTCAATGAGATCTTTTATGACCTGGTaagacagataaacagaaagACGCCGGTGGAGAAGAAGAGAGCAAAAAAGAAGTCAAACTGCATCCTGCTGTAACACAGCTGCATCGCCGCAGCAGCTCTGAGCCAGATTGCCGAAATGAAGAACTGTTGCCCAGCTGGCCATTCCTGTTCCTCTCTACAGTTATTGGCCAAACAATTAGTGAGGCTGAACACCAGACTCCTCAACAAATACACAGACttgacagaaaaagagagatgcaGCCTCTGCCTTTTCTTCCAGAGCAGTCTTGACTATTTTCTTCCCCCTTTTTCTTGATTACTGTTTTGTTTCCTGAAAGAAATTCCACACTAAGGATCTTTGTCTGGAGCAGAAGCTCCACCTGTGACTTGGCAATGGGGGGTTAGACAGTCTGGGAGAAAGTTGAGGACTTTCTCTGTGTGTCCTACAGAGAGAATGGggacatttcaaaaacatgctCATGTTTGTAAAATGGTcagatctttcttttttcccccataaTGTTTGGACTATCACTAATCATTTGTACAGAGAAGCAGCTGTGCCcttcatcaaaacattttctgagTGACTCACTGCTTTCATTTTGCCCATAATATGCTTAgattcttattttcttttatctaaacaaactgtgaaaaagtccttttttcttttggtggtaaggttaaaataagaaatttgGATATGTCTATCTTGAaggtaaaaatatatcataCTGAAgccaatgcatttgtttttttcacaatcaaaattagattaattttccagcttttaaagttaattacattttagtaacctattttcttcctttttttcccttggTTGTATTTTGCGGTAGGCTGTAGCTCAGCCTGGGATAAATATCAACCATTTTGTGCCTGAGCAGGAGAAGAATGAAATCAGATCTATAATGCAGAGATGACTTCTCCTCCAATAACCGCTAAACCAATAATCAATAGTCAGTCCTTGACACTTCATTTGCCAAGTTAAATCAGTCTTGATGTGTCAAATATTTTACTTTGGTTTTCATTGTTCTGCTCTGGTTTTGCTGAGCATTTCAAACAAAGTGTCTGGCtggcttttgatttatttttaaagtaatgtgtgcttagttttttttttttttttttttttttttggacatagatttaaataaatgtatttcatatt
>XM_043246207.1
TTAACGAATCCCCGAACCACTGCGACCCGGCACGGCCATTCAGTTACATTCACAAACTCGCGTACTACACGGCGAGCGCAGGAATTGGGAGGAAGGTCGTTCAACAAAACTTGGCGTAACAAACATGCTAAGGTGCTAGCGCGAGCTAGCAAGGCGCAGGCCGTCTGACTGAGCAGTATTACCCCACACAGCAGCGCTGCTGCCCGCCGGAGTTCACAGGAAACACCGGCCTCAACAGAGAGACCCACCATGCGTGAATATAAGCTTGTGGTCCTGGGCTCTGGAGGCGTGGGGAAGTCTGCACTGACAGTTCAGTTTGTACAGGGAATATTTGTTGAAAAATATGATCCCACAATAGAAGACTCGTATAGAAAGcaagttGAGGTTGATGGGCAGCAGTGTATGCTAGAGATCCTGGACACTGCTGGCACAGAGCAGTTCACAGCGATGAGGGACCTGTACATGAAGAATGGGCAGGGTTTCGCTCTGGTTTACTCCATCACAGCACAGTCCACCTTTAATGACCTGCAGGACCTACGAGAGCAGATTCTGAGAGTGAAGGACACAGAGGATGTGCCAATGATCTTGGTTGGAAATAAGTGTGATTTAGAGGATGAGAGGGTTGTTGGGAAAGAGCAGGGTCAGAATCTTGCTCGTCAGTGGAGTAATTGTGCCTTTCTAGAATCTTCTGCCAAATCAAAGATCAACGTCAATGAGATCTTTTATGACCTGGTaagacagataaacagaaagACGCCGGTGGAGAAGAAGAGAGCAAAAAAGAAGTCAAACTGCATCCTGCTGTAACACAGCTGCATCGCCGCAGCAGCTCTGAGCCAGATTGCCGAAATGAAGAACTGTTGCCCAGCTGGCCATTCCTGTTCCTCTCTACAGTTATTGGCCAAACAATTAGTGAGGCTGAACACCAGACTCCTCAACAAATACACAGACttgacagaaaaagagagatgcaGCCTCTGCCTTTTCTTCCAGAGCAGTCTTGACTATTTTCTTCCCCCTTTTTCTTGATTACTGTTTTGTTTCCTGAAAGAAATTCCACACTAAGGATCTTTGTCTGGAGCAGAAGCTCCACCTGTGACTTGGCAATGGGGGGTTAGACAGTCTGGGAGAAAGTTGAGGACTTTCTCTGTGTGTCCTACAGAGAGAATGGggacatttcaaaaacatgctCATGTTTGTAAAATGGTcagatctttcttttttcccccataaTGTTTGGACTATCACTAATCATTTGTACAGAGAAGCAGCTGTGCCcttcatcaaaacattttctgagTGACTCACTGCTTTCATTTTGCCCATAATATGCTTAgattcttattttcttttatctaaacaaactgtgaaaaagtccttttttcttttggtggtaaggttaaaataagaaatttgGATATGTCTATCTTGAaggtaaaaatatatcataCTGAAgccaatgcatttgtttttttcacaatcaaaattagattaattttccagcttttaaagttaattacattttagtaacctattttcttcctttttttcccttggTTGTATTTTGCGGTAGGCTGTAGCTCAGCCTGGGATAAATATCAACCATTTTGTGCCTGAGCAGGAGAAGAATGAAATCAGATCTATAATGCAGAGATGACTTCTCCTCCAATAACCGCTAAACCAATAATCAATAGTCAGTCCTTGACACTTCATTTGCCAAGTTAAATCAGTCTTGATGTGTCAAATATTTTACTTTGGTTTTCATTGTTCTGCTCTGGTTTTGCTGAGCATTTCAAACAAAGTGTCTGGCtggcttttgatttatttttaaagtaatgtgtgcttagttttttttttttttttttttttttttggacatagatttaaataaatgtatttcatatt

Function

symbol description
rap1aa Enables MAP kinase kinase activity. Acts upstream of or within chondrocyte intercalation involved in growth plate cartilage morphogenesis and heart development. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human RAP1A (RAP1A, member of RAS oncogene family).
rap1a Predicted to enable GTPase activity; guanyl ribonucleotide binding activity; and guanyl-nucleotide exchange factor activity. Involved in several processes, including Rap protein signal transduction; cellular response to cAMP; and regulation of neurotransmitter receptor localization to postsynaptic specialization membrane. Located in perinuclear region of cytoplasm. Is active in glutamatergic synapse.

NR:

description
PREDICTED: ras-related protein O-Krev

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04353 RAP1A; Ras-related protein Rap-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246206.1 False 1817 mRNA 0.41 8 13545306 13551399
XM_043246207.1 True 1905 mRNA 0.42 8 13545306 13551247

Neighbor

gene id symbol gene type direction distance location
ddx20 ddx20,LOC107669638,LOC107751451,LOC107594523,LOC107711848,LOC107679786,LOC107556298 coding downstream 13718 13525573 ~ 13531588 (-)
cttnbp2nlb LOC107717506,LOC107669604,LOC107562782,LOC107679769,LOC107711913,LOC107591755 coding downstream 176280 13351816 ~ 13369026 (-)
LOC122350377 LOC107562778,LOC107717538,LOC107669657,LOC107711943,LOC107679735,LOC107591842 coding downstream 246331 13286754 ~ 13298975 (-)
mov10b.2 mov10b.2,LOC107711942,LOC107679724,LOC107591756,LOC107717538 coding downstream 258628 13276193 ~ 13286678 (-)
slc16a1b slc16a1b,LOC107669643,LOC107717534,LOC107591766,LOC107711946,LOC107679710,LOC108425094 coding downstream 480783 13045401 ~ 13064523 (-)
LOC122350013 NA coding upstream 1069 13552468 ~ 13558463 (-)
LOC122350012 NA coding upstream 7482 13558881 ~ 13561981 (-)
LOC122350644 LOC107556303,LOC107669603,LOC107751461,LOC107679797,LOC107711850,LOC107594521 coding upstream 11557 13562956 ~ 13570832 (-)
kdm5bb LOC107751449,LOC107556320,LOC107711851 coding upstream 19680 13571079 ~ 13591176 (-)
tuba5 tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418 coding upstream 42302 13593701 ~ 13597847 (-)
G63751 NA non-coding downstream 195035 13347624 ~ 13350271 (-)
G63745 NA non-coding downstream 212919 13332164 ~ 13332387 (-)
G63735 NA non-coding downstream 270438 13261692 ~ 13274868 (-)
G63711 NA non-coding downstream 414089 13128190 ~ 13131217 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 744563 12797379 ~ 12800743 (-)
LOC122350567 NA non-coding upstream 68593 13619992 ~ 13682456 (-)
G63866 NA non-coding upstream 136779 13688178 ~ 13693222 (-)
G63867 NA non-coding upstream 148258 13699657 ~ 13700068 (-)
G63868 NA non-coding upstream 159756 13711155 ~ 13712401 (-)
G63873 NA non-coding upstream 172332 13723731 ~ 13724000 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 299176 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 461934 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1041153 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 1182202 12342160 ~ 12363104 (-)
G63385 NA other downstream 1280773 12263694 ~ 12264533 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 165229 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 258029 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 834201 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 1172313 14723712 ~ 14731391 (-)
G64228 NA other upstream 1228132 14779531 ~ 14781710 (-)

Expression


Co-expression Network