LOC122350022


Basic Information

Item Value
gene id LOC122350022
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19582312 ~ 19583244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246215.1
ATGAACAGTTCAGAATTTAGCAAACGTAAAGAGGTTTTTGGGgaggctttttttaaaaacttcacTGTGGTCTCATTTGGTATAATTATCAATTGTATCAACAGcttgctgctttatatttacTTCAAGAACCCCGTCTTCGCTCAGGAGCCCCGCTATATTCTCTACATGCATCTGATCATCAATGACATCATtacactgtctctctctgtgattTTGTTTGTGCTTGCTTACATACTACCAGGCTACCCTGTTGCTGCCTGCTGCTTCATCCTCGTCTTTGGAGGCAGTGTCTACAAGAACACACCACTAAACCTGGCCGGCATGGCTATTGAACGCTTTGTGGCCGTCTGCTACCCTCTACATCATGCACAATTATGCTCCATTCGAAACACCAAAATCTTGATCGGCATCATCTGGCTGGTGGGAGCTGTGCCTGGTGTTGTGGATATGCTTGTGATCGCAATTAAACGTCCCCTCTCCTTCTTTACTTCTAACCGCATTGGCCTCCCCCACAATCTTTTCAATGATGATCAAAACTATTATATAAGTCATGCTGTCTTCAACATCGGCTACTTGTGTTTGGTGTGGTTGCTGCTCTTCTacacttattttaaagtacTGTTCTCTGCTAAAGCAGCTGCTTCAGAATCAGCTCAAGCACAGAAGGCCAGGAGAACCATTTTACTGCATGCAGTCCAGTTACTGTTCTGTACACTGTCCCTGTTCACATCTTTCATGAATGGGGCCATAAGTGCTCTCTTTCCTTACTACCAGTCTGTAATCTTCTTCTGCGACTTCATTCTCACTAGCATTTTACCACGTCTGCTAAGCCCACTCATATATGGCATGAGGgatcaaaagtttaaaaaatacttgAAGAGTTCACTGATTTGTGGCTCAGACAAAATTGCCATCGACCCTTCTGATTAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246215.1 True 933 mRNA 0.43 1 19582312 19583244

Neighbor

gene id symbol gene type direction distance location
fmodb fmodb,LOC107683908,LOC107747218,LOC107726688,LOC107575999,LOC107702840 coding upstream 4422 19572311 ~ 19577890 (+)
mapkapk2b mapkapk2b,LOC107683909,LOC107550950,LOC107726784,LOC107747217,LOC107576554 coding upstream 11079 19567279 ~ 19571233 (+)
csf1b csf1b,LOC107683886,LOC107747213,LOC107702844 coding upstream 105656 19464595 ~ 19476656 (+)
ren ren,LOC107747224,LOC107727110,LOC107570508,LOC107550929 coding upstream 125556 19451487 ~ 19456756 (+)
kdm5c LOC107747206,LOC107550909,LOC107683899,LOC107570512,LOC107724909,LOC107702826 coding upstream 158500 19406564 ~ 19423812 (+)
LOC122350024 LOC107683897,LOC107735514 coding downstream 6340 19589584 ~ 19590513 (+)
LOC122350025 LOC107683897,LOC107735514 coding downstream 13334 19596578 ~ 19600117 (+)
adrb3a adrb3a,LOC107683881,LOC107740977,LOC107550948,LOC107569580,LOC107724439,LOC107702835 coding downstream 80884 19664128 ~ 19684051 (+)
npm2a npm2a,LOC107550946,LOC107740978,LOC107683882,LOC107724550,LOC107702849,LOC107569577 coding downstream 105641 19688885 ~ 19691294 (+)
got1l1 got1l1,LOC107725565,LOC107702805,LOC107569578 coding downstream 108191 19691435 ~ 19704410 (+)
G65268 NA non-coding upstream 23143 19558873 ~ 19559169 (+)
G65267 NA non-coding upstream 23826 19557544 ~ 19558486 (+)
G65119 NA non-coding upstream 100269 19405656 ~ 19482043 (+)
G65111 NA non-coding upstream 156590 19424019 ~ 19425722 (+)
G65074 NA non-coding upstream 348928 19224569 ~ 19233384 (+)
G65284 NA non-coding downstream 111136 19694380 ~ 19752601 (+)
G65295 rab11fip1,LOC107579780,LOC107683894,LOC107724309,LOC107565115,LOC107740979 non-coding downstream 176226 19759470 ~ 19780752 (+)
G65361 NA non-coding downstream 356863 19940107 ~ 19940869 (+)
G65403 LOC107702858,LOC107723482 non-coding downstream 456702 20039946 ~ 20040563 (+)
G65402 NA non-coding downstream 466723 20049967 ~ 20053522 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 308542 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 380625 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 430007 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 486241 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 860066 18695454 ~ 18722246 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 446790 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 551875 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 840037 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 1375356 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1619204 21202448 ~ 21204346 (+)

Expression


Co-expression Network