LOC122350024 (LOC107683897,LOC107735514)


Basic Information

Item Value
gene id LOC122350024
gene name LOC107683897,LOC107735514
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19589584 ~ 19590513 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246216.1
atgaatatttcagatttaagcGACCGACAAGAATTCTATGAGGAATCcttattcaaaaacataattgtGGTCTTATTTGGTATCTCTATCAGTTGTATCAATAGCCTgttgatttatattttcttcaAGAACCCTGTCTTCGCTCAGGAGCCCCGCTATATTCTTTACATGCATCTGATCATCAATGACATCATTACATTGTCTGTCAGTgtgattttgtttgtgtttatttacttactgCCAAAGATGAATGTCGCTATCTGCTGCATTTTCATCTTAATTGGAAGCAGTGCCTACAGGAACACACCACTAAACCTGGCCGGCATGGCTATTGAGCGCTTTGTGGCCGTCTGCTACCCTCTACATCATGCACAAGTATGCACCATCCAAAATACCAAAATCCTGATCGGCATCATCTGGTTGGTGGGAGCTCTGCCTTGCCTGGTGGATCTGCTTGTGGTCTTGGTTCTTCGTCCGCTTTCCTTTTTTACCACTAGTCGGACATGCTaccatgaaaatgtatttgatttaaaatacaatatagtaAGTCATGTTGTCTTTAATATTGGCTACATGTGCTTAGTGTGGGTACTGCTCTTCTACACTTACTTCAAAGTACTGTTCTCTGCTAAAGCAGCTGCTTCAGAACCAGCTCAAGCACAGAAGGCCAGGAGAACCATTTTACTGCATGGAGTCCAGTTACTGCTCTGTACACTGTCCCTCTTCACAAGTGTACTGGACGGGGCCTTAACTTCTCTCTTCCCTTACTACAGGTCTGAAATCTACTTCTGCGACTTCATTCTTACCAGCATTTTACCACGTCTGCTAAGTCCACTAATATATGGCATGAGGgatcaaaagtttaaaaagtacatGAAGATTGCACTGATGTGTGGCTTTAACAAGAGAGCCATTGACCCTTGTGATTAA

Function

NR:

description
PREDICTED: olfactory receptor 4C3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246216.1 True 930 mRNA 0.42 1 19589584 19590513

Neighbor

gene id symbol gene type direction distance location
LOC122350022 NA coding upstream 6340 19582312 ~ 19583244 (+)
fmodb fmodb,LOC107683908,LOC107747218,LOC107726688,LOC107575999,LOC107702840 coding upstream 11694 19572311 ~ 19577890 (+)
mapkapk2b mapkapk2b,LOC107683909,LOC107550950,LOC107726784,LOC107747217,LOC107576554 coding upstream 18351 19567279 ~ 19571233 (+)
csf1b csf1b,LOC107683886,LOC107747213,LOC107702844 coding upstream 112928 19464595 ~ 19476656 (+)
ren ren,LOC107747224,LOC107727110,LOC107570508,LOC107550929 coding upstream 132828 19451487 ~ 19456756 (+)
LOC122350025 LOC107683897,LOC107735514 coding downstream 6065 19596578 ~ 19600117 (+)
adrb3a adrb3a,LOC107683881,LOC107740977,LOC107550948,LOC107569580,LOC107724439,LOC107702835 coding downstream 73615 19664128 ~ 19684051 (+)
npm2a npm2a,LOC107550946,LOC107740978,LOC107683882,LOC107724550,LOC107702849,LOC107569577 coding downstream 98372 19688885 ~ 19691294 (+)
got1l1 got1l1,LOC107725565,LOC107702805,LOC107569578 coding downstream 100922 19691435 ~ 19704410 (+)
prlhr2a prlhr2a,LOC107726477,LOC107569575,LOC107740998,LOC107702854,LOC107683906,LOC107565126 coding downstream 143133 19733646 ~ 19746047 (+)
G65268 NA non-coding upstream 30415 19558873 ~ 19559169 (+)
G65267 NA non-coding upstream 31098 19557544 ~ 19558486 (+)
G65119 NA non-coding upstream 107541 19405656 ~ 19482043 (+)
G65111 NA non-coding upstream 163862 19424019 ~ 19425722 (+)
G65074 NA non-coding upstream 356200 19224569 ~ 19233384 (+)
G65284 NA non-coding downstream 103867 19694380 ~ 19752601 (+)
G65295 rab11fip1,LOC107579780,LOC107683894,LOC107724309,LOC107565115,LOC107740979 non-coding downstream 168957 19759470 ~ 19780752 (+)
G65361 NA non-coding downstream 349594 19940107 ~ 19940869 (+)
G65403 LOC107702858,LOC107723482 non-coding downstream 449433 20039946 ~ 20040563 (+)
G65402 NA non-coding downstream 459454 20049967 ~ 20053522 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 315814 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 387897 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 437279 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 493513 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 867338 18695454 ~ 18722246 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 439521 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 544606 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 832768 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 1368087 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1611935 21202448 ~ 21204346 (+)

Expression


Co-expression Network