si:ch211-198o12.4 (LOC107710821,LOC107553123,LOC107661345)


Basic Information

Item Value
gene id si:ch211-198o12.4
gene name LOC107710821,LOC107553123,LOC107661345
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21944819 ~ 21948563 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246220.1
AGGTTGAAGATGCATTGCCGGAGAATTTCAAATCTGCCATTTTTGTATAAACCCGATGCCATTCATGAATCCACCACCAAGAGCCACTTCAGACTCACTGAGAGCAGCTCCATCCCTGTCGTTCAGCCTAAGACAACCAACCTCACAACACACAGgacaaactttaaaatgacCTCCGGGGACAAGAGTGGAGACTTTGTGACCACTCATTCTGATTTCAAGCCCCTGCCTATATCCAAAGCCAAACTTGTTCGACCGGTCACCAAAGTCAGAATTAGGGTGCCGGAGGAAAAATATCCAGAGCCGACATACAGATCCAGTTACACCAAACATGAGGTGTCTCCAATCCTCTACGCAAAAGAACCAGGGAGCCCAGGTGTTGGATCAAGTCTAAGGCAGGAGAAAAAGAACAGATATGACTGTAGTTATCGAGAGCAGTTCTTGTACCGCGGGtgtcctcctctttctcctctgGACAGCACAGAGAAGcaaCGGGTTCAGCATTCAGCTGTACCGATGGGAGATCGAGGTAAAATACAAGACAAGCAAACTACTTATTCCAGCTTTTCCAGACAGTCAGGTGACCGCAGCCCCGGAAGCCTGCTTTACAAGAGAAAGAAGACTCAGCCTTTCAAGCTTCGGGAAGTCCGTGATGACGAATGGACTACAGCGTCTTCTGAGGAGTTTCCTTCACACGAATGCGGCCCGGTTCGCCTGGAGCGGAGATGCCCGACTCTCAGCTCTGTGTTCAAAGGAGAGAAGCTAACAGGCGACCAGGACAAAGTGTCAACAACAAACCAGTCCTTCCTCTCAGAGATGAACCGCTCTGAGTTCCCAGTGCATGTGGACGGACCCAGTATCAGGACACTGAGCAGTGTTACGTTCGGGAGGCCTGATCTGGCTGGAAAATACTACAGCACAACATCACAGGAGCAGTTCCCGTCAAAAACAGCGCTCCGTCTCAAGCCGGCGCTTTTCCCACCCAGCCACATCCTCGAGCAAGAGTTGGATCAGATGCTTACAACCATGCAAAAAGATTTTGTCCCCCTGAACTCCAGAAGACAGGAACTGAGCCCTAGTCAGCTTCAGCAGGTTAAAGACAGTCACATCAGGCCCCTGCGCAGCAAACATGACTTCAGGACGACTCACAATGAAACATATGTGTCTCAACCCCACTGCAAGGCGTCCCAGGACAACCTACCCCTCAGAAATGTCAGCCAtatgccattttaaaaaaaaaacccaacaacttCCAAATCTCAGAAAAGCTTTGCACTCTAAACAAATGGGGAGTTTCTGTTTTTAGGTGTTCGTCTTTAAACATAATTGAACTCGGCCCTGCACATTACACATGAGGGCCGAAAGACTTTAATAGTTTAAGACATTAATAATAGCCATCTTCTACCTACAGTAGTATGTGGCCACATATTATTTGTGAcagcagtattattatttttttcatgccatttacagaaaaacaaggATTTTGTTTCGAGTGCAgacttttgtttttgacattacGCAATAAAATGAGAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC107710821

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246220.1 True 1536 mRNA 0.47 8 21944819 21948563

Neighbor

gene id symbol gene type direction distance location
disp3 disp3,LOC107661343,LOC107728359,LOC107678372,LOC107710822 coding upstream 93044 21803124 ~ 21851775 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC107710834,LOC107665195,LOC107562650,LOC107678420,LOC103036512 coding upstream 157069 21764151 ~ 21787750 (+)
ubl4a zgc:56596,ubl4a,LOC107553161,LOC107562643,LOC107665196,LOC107678422 coding upstream 187186 21755030 ~ 21757633 (+)
bin3 bin3,LOC107678406,LOC107710841,LOC107553165,LOC107665194 coding upstream 247193 21647985 ~ 21697626 (+)
egr3 egr3,LOC107716610,LOC107562644,LOC107678405,LOC107665203,LOC107710840,LOC106579855 coding upstream 300234 21637885 ~ 21644585 (+)
LOC122351030 NA coding downstream 1516 21950079 ~ 21959899 (+)
LOC122351029 NA coding downstream 9218 21957781 ~ 21959899 (+)
LOC122350739 antxrl,antxr1a,LOC107661337,LOC107710819,LOC108265351,LOC107562635 coding downstream 16511 21965074 ~ 22007156 (+)
agtpbp1 agtpbp1,LOC107757430,LOC107752548,LOC107562637,LOC107678371 coding downstream 342188 22290751 ~ 22318814 (+)
hnrnpk hnrnpk,LOC107757432,LOC107752553,LOC107678442 coding downstream 422159 22370722 ~ 22378446 (+)
G65959 NA non-coding upstream 199601 21744834 ~ 21745218 (+)
G65958 NA non-coding upstream 200140 21744475 ~ 21744679 (+)
G65957 NA non-coding upstream 200442 21744089 ~ 21744377 (+)
G65955 NA non-coding upstream 204900 21739676 ~ 21739919 (+)
G65954 NA non-coding upstream 208464 21736032 ~ 21736355 (+)
G65998 NA non-coding downstream 62086 22010649 ~ 22243293 (+)
G66013 NA non-coding downstream 204725 22153288 ~ 22157512 (+)
G66014 gfpt1,LOC107678434,LOC107752562,LOC107562636,LOC107710818,LOC107553119 non-coding downstream 222076 22170639 ~ 22175064 (+)
G66022 NA non-coding downstream 335171 22283734 ~ 22285432 (+)
G66024 NA non-coding downstream 339745 22288308 ~ 22288847 (+)
G65992 LOC107553157,LOC107661339 other upstream 3895 21939146 ~ 21940924 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other upstream 190099 21751762 ~ 21754720 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other upstream 405833 21469990 ~ 21538986 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other upstream 570194 21359237 ~ 21374625 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other upstream 740473 21202448 ~ 21204346 (+)
G65995 NA other downstream 1325 21949888 ~ 21961845 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other downstream 14902 21963465 ~ 21964563 (+)
G66010 naa35,LOC107757435,LOC107752550 other downstream 167720 22116283 ~ 22117834 (+)
G66011 naa35,LOC107752550,LOC107757435 other downstream 171350 22119913 ~ 22120796 (+)
LOC122350000 ddx51 other downstream 583905 22532468 ~ 22540233 (+)

Expression


Co-expression Network