LOC122350040


Basic Information

Item Value
gene id LOC122350040
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22944210 ~ 22946154 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246224.1
ATGCCGTGCACATCTCGCAGCTGCAGAGCAGAGCCGCGAGCTCCTACATGCCAGGCGCCTGTTCCAGAGAGAGCTCTAAAGGCCAAGAAGATACAGAGGTTCTTGAAAGgtttttttacttgtaaaccCCCCAAAACCACCACCGCCGGAGCCCGACAGAGCGACACAGAGCCTCATGGATGCTCTGAAGGTGAAGCTGAACAGATCAGGGACACAGAGAGCACTTCCACGTACGGCAGCTGTTTGTCTTTCCTCAGTGCCCTGCAGGAGGGTGAAGAAGACATTCCCGAAGCTGTCCAGAACAGCGGCACATCCATGCGCACATGTGCATCATCCCTCACAGATGTTCAGGGGGTTAACGAGGACATTCCCAACGAAGAGCAAAAGGCCACCTGCTCTCCCAACTTAAGCATTTCTAAGAATCAAAGCCCTTTGCCGTCTGAGAGCGAGACCGTTCCATCGTCAGACGACATTTTCTGGGAGATGGAGACAGAAAAGATCCATTTAGATACAACAGGAAAGACAGGTGACATCTACAAGCATTACAAAACTGGTCAAAGTCTGGGTTATGGATCATTTGGAGAAGTCTTTGAAGGCATCCGTCTGTCAGATTCCAAAAAGGTTGCTATCAAATTTGTGAGGAAGAGGGAAAACATGCGAAAAATCAAGATGGATTCGTTCTCCAAAGCCTTGCCAGTAGAGATCGCTTTGATGATGCTCATAAACAGAGGCCCTAGAGTTCCTCAAATAATACAGCTGCTGGACTGGTACGAGGCGCCGAAAGAATACGTTCTTATCTTAGAGCGGCCCATGCCATGCGAAGACATGGACTCGTTTCTAAAGCGACACCAAGGCCGCGTCGAGGAACGTTCAGCACGAGTTGTGATGCGGCAGGTTGTCGCCGCTGCAGTGATATGCTGCCGGAGGGGCGTCTTCCACAGGGACATCAAGCTGGAAAACCTTCTCATTAACAGAAACACCTTGCAGGTCAAATTAATAGACTTCGGCTGTGGTACACGCATGAAGAGGACTGCCTATTCAGCATTCTGTGGAACGAAGATCTACGCTCCCCCTGAGCGTAACTATTACGCCGAGCCTACAACAGTGTACTCTTTAGGCGTTCTGTTGTACAGGATGGTGTGCGGGAAGTTCCCCGACCGTGAGATCCAGAAGATCTTTGACAGGACCTGGTACACAGGAAAACTTTCTAAAGGTGAGAACAAGGCGGACAGATCATGCAGGAGCTTTTAGAATTGCTTAAAACAACGCAATCGGTTGTTACAGCAAGTACGACGCCCACCCTAATCATCCgacgtctctctcttctttctgcaCAGAATGCATCGATCTGATCTGTTCCTGCATGGACGGAGATCCAGACGAGAGGATTGGTTTGGAAAAGATCCTCCAACATGACTGGTTCTAGGCACT

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246224.1 True 1431 mRNA 0.50 4 22944210 22946154

Neighbor

gene id symbol gene type direction distance location
fam110a LOC107755603,LOC107703992,LOC107678459,LOC107570008,LOC107553114,LOC107752568 coding upstream 230095 22710095 ~ 22714115 (+)
prickle3 LOC107752556,LOC107678453,LOC107755595,LOC107703993 coding upstream 234652 22673889 ~ 22709558 (+)
plp2b plp2,LOC107570007,LOC107755602,LOC107553143,LOC107752558,LOC107678458 coding upstream 270928 22661149 ~ 22673282 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding upstream 284963 22647848 ~ 22659247 (+)
LOC122351043 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574 coding upstream 386015 22554867 ~ 22558195 (+)
plod1a plod1a,plod1,LOC107698842,LOC107678430,LOC107748983 coding downstream 10715 22956869 ~ 22968973 (+)
nppal zgc:195023,LOC107595800,LOC107748995 coding downstream 476518 23422672 ~ 23423662 (+)
nppb LOC107687134,LOC107748982,LOC107595789 coding downstream 479754 23425908 ~ 23427204 (+)
nppa nppa,LOC107691053,LOC107602452,LOC107595801,LOC107687143 coding downstream 482761 23428915 ~ 23430926 (+)
mthfr mthfr,LOC107602465,LOC107691055,LOC107687111 coding downstream 501037 23447191 ~ 23456783 (+)
LOC122350789 NA non-coding upstream 32828 22909647 ~ 22911382 (+)
G66261 NA non-coding upstream 144056 22799639 ~ 22800154 (+)
G66189 NA non-coding upstream 412460 22530253 ~ 22531750 (+)
G66183 NA non-coding upstream 430965 22512179 ~ 22513245 (+)
G66024 NA non-coding upstream 655363 22288308 ~ 22288847 (+)
LOC122350915 NA non-coding downstream 283889 23230043 ~ 23231024 (+)
LOC122350913 NA non-coding downstream 285410 23231564 ~ 23239812 (+)
G66344 NA non-coding downstream 291823 23237977 ~ 23238253 (+)
G66350 NA non-coding downstream 486655 23432809 ~ 23433745 (+)
G66351 NA non-coding downstream 487964 23434118 ~ 23435033 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other upstream 18442 22899436 ~ 22925768 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other upstream 216766 22724582 ~ 22727444 (+)
mfsd2al2 NA other upstream 220302 22715379 ~ 22723908 (+)
LOC122350000 ddx51 other upstream 403977 22532468 ~ 22540233 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 823414 22119913 ~ 22120796 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 27841 22973995 ~ 22987162 (+)
prdm16 prdm16,si:ch211-263k4.2 other downstream 108462 23054616 ~ 23401562 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other downstream 457559 23403713 ~ 23410561 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other downstream 686196 23632350 ~ 23634065 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 806414 23752568 ~ 23804049 (+)

Expression


Co-expression Network