LOC122350060 (LOC107710843,LOC107665201,LOC107553167,LOC107574349,LOC107562645)


Basic Information

Item Value
gene id LOC122350060
gene name LOC107710843,LOC107665201,LOC107553167,LOC107574349,LOC107562645
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21540047 ~ 21625933 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246254.1
TTTAACTTTGTCGCGTAATATTATTAGCTTACTATTTTAGTCGACAGCCAAAGACTGTTTAAAGGGCTAGCTCAGCGTCAGCTGCGAATATCAAGGGTTTTTCGAGATTTTCAGGCTCGGTGGAAATGCGTTTGTTTTCCACCCTGTTTATTTTGTGCGTCGTCCCTGGATGTCACATGACCACATCCACCTGTGATGAGCTCCTGTCTTCAGAAGATGCTCAGTTCTGCAAGGGACAATTAAAGGTGATTTACCCTCACCTGGTTGTTGACAAATGCATGATCGTCCCTCAGATGTTCAGAGAGAAGATCAGTAAGGACTGGGGACCACCTCAGATACAGCTGCCAGGTGCCGATGAGgaGAAGAAATACACTCTATTAATGGTGGATCCAGATGCTCCTAGTCGGCAGAAACCCTCTCGAGCTTACTGGAGACACTGGTTACTGGTCGACGCTAAGGGGGAAGCGCTGCAGAGAGGAGACGCCGGCGCTGTTGAACTATCCGCGTACGCCCGCCCCACTCCACCCCGAGGCACTGGACTCCACCGCTACCAGTTCCTTGTATTTGAGCAGCCTGAAGGCCAGAGCCTGTCCCTCAGCCCACAGGAGAACAGCTCACGggTATTTTTCATCGGCTCCGATCAGGCCAAAATGATGTCATCAGCGGACCCCCTCCAGCCATTTCCTGTAACTGGGATCCGCAGGCATTTGTTGAGACGTTTGGTCTGACTGGACCAGTGGCTTCTCTTCAGTTCCTCACCCAAAACTACAAGGACTAGGACACGTCCGGCCCgctgctgacctctgacctctgaccgtCACACACCGCACGAATGCATCTAGGCACACTCGTATTTAGGACAATATTAAACGAATAAAAAAACGGA
>XM_043246255.1
TTTAACTTTGTCGCGTAATATTATTAGCTTACTATTTTAGTCGACAGCCAAAGACTGTTTAAAGGGCTAGCTCAGCGTCAGCTGCGAATATCAAGGGTTTTTCGAGATTTTCAGGCTCGGTGGAAATGCGTTTGTTTTCCACCCTGTTTATTTTGTGCGTCGTCCCTGGATGTCACATGACCACATCCACCTGTGATGAGCTCCTGTCTTCAGAAGATGCTCAGTTCTGCAAGGGACAATTAAAGGTGATTTACCCTCACCTGGTTGTTGACAAATGCATGATCGTCCCTCAGATGTTCAGAGAGAAGATCAGTAAGGACTGGGGACCACCTCAGATACAGCTGCCAGGTGCCGATGAGgaGAAGAAATACACTCTATTAATGGTGGATCCAGATGCTCCTAGTCGGCAGAAACCCTCTCGAGCTTACTGGAGACACTGGTTACTGGTCGACGCTAAGGGGGAAGCGCTGCAGAGAGGAGACGCCGGCGCTGTTGAACTATCCGCGTACGCCCGCCCCACTCCACCCCGAGGCACTGGACTCCACCGCTACCAGTTCCTTGTATTTGAGCAGCCTGAAGGCCAGAGCCTGTCCCTCAGCCCACAGGAGAACAGCTCACGggGTAACTGGGATCCGCAGGCATTTGTTGAGACGTTTGGTCTGACTGGACCAGTGGCTTCTCTTCAGTTCCTCACCCAAAACTACAAGGACTAGGACACGTCCGGCCCgctgctgacctctgacctctgaccgtCACACACCGCACGAATGCATCTAGGCACACTCGTATTTAGGACAATATTAAACGAATAAAAAAACGGA
>XM_043246256.1
TTTAACTTTGTCGCGTAATATTATTAGCTTACTATTTTAGTCGACAGCCAAAGACTGTTTAAAGGGCTAGCTCAGCGTCAGCTGCGAATATCAAGGGTTTTTCGAGATTTTCAGGCTCGGTGGAAATGCGTTTGTTTTCCACCCTGTTTATTTTGTGCGTCGTCCCTGGATGTCACATGACCACATCCACCTGTGATGAGCTCCTGTCTTCAGAAGATGCTCAGTTCTGCAAGGGACAATTAAAGGTGATTTACCCTCACCTGGTTGTTGACAAATGCATGATCGTCCCTCAGATGTTCAGAGAGAAGATCAGTAAGGACTGGGGACCACCTCAGATACAGCTGCCAGGTGCCGATGAGgaGAAGAAATACACTCTATTAATGGTGGATCCAGATGCTCCTAGTCGGCAGAAACCCTCTCGAGCTTACTGGAGACACTGGTTACTGGTCGACGCTAAGGGGGAAGCGCTGCAGAGAGGAGACGCCGGCGCTGTTGAACTATCCGGTAACTGGGATCCGCAGGCATTTGTTGAGACGTTTGGTCTGACTGGACCAGTGGCTTCTCTTCAGTTCCTCACCCAAAACTACAAGGACTAGGACACGTCCGGCCCgctgctgacctctgacctctgaccgtCACACACCGCACGAATGCATCTAGGCACACTCGTATTTAGGACAATATTAAACGAATAAAAAAACGGA

Function

NR:

description
PREDICTED: phosphatidylethanolamine-binding protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246254.1 True 886 mRNA 0.51 8 21540047 21625933
XM_043246255.1 False 821 mRNA 0.51 7 21540047 21625933
XM_043246256.1 False 704 mRNA 0.49 6 21540047 21625933

Neighbor

gene id symbol gene type direction distance location
entpd4 entpd4,LOC107698120,LOC107710847,LOC107678413,LOC107747713 coding upstream 184323 21345374 ~ 21355724 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414,LOC107553169 coding upstream 195140 21337267 ~ 21344907 (+)
LOC122351138 NA coding upstream 208887 21331042 ~ 21331160 (+)
LOC122351136 NA coding upstream 211243 21328686 ~ 21328804 (+)
LOC122351127 NA coding upstream 213583 21326346 ~ 21326464 (+)
egr3 egr3,LOC107716610,LOC107562644,LOC107678405,LOC107665203,LOC107710840,LOC106579855 coding downstream 11952 21637885 ~ 21644585 (+)
bin3 bin3,LOC107678406,LOC107710841,LOC107553165,LOC107665194 coding downstream 22052 21647985 ~ 21697626 (+)
ubl4a zgc:56596,ubl4a,LOC107553161,LOC107562643,LOC107665196,LOC107678422 coding downstream 129097 21755030 ~ 21757633 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC107710834,LOC107665195,LOC107562650,LOC107678420,LOC103036512 coding downstream 138218 21764151 ~ 21787750 (+)
disp3 disp3,LOC107661343,LOC107728359,LOC107678372,LOC107710822 coding downstream 177191 21803124 ~ 21851775 (+)
G65914 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding upstream 30971 21496426 ~ 21509076 (+)
G65913 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding upstream 44509 21494812 ~ 21495538 (+)
G65769 NA non-coding upstream 514209 21025397 ~ 21025838 (+)
G65768 NA non-coding upstream 520511 21019292 ~ 21019536 (+)
G65754 NA non-coding upstream 596668 20939422 ~ 20943379 (+)
G65944 NA non-coding downstream 10188 21636121 ~ 21698404 (+)
G65951 NA non-coding downstream 104641 21730574 ~ 21731140 (+)
G65953 NA non-coding downstream 108829 21734762 ~ 21735247 (+)
G65954 NA non-coding downstream 110099 21736032 ~ 21736355 (+)
G65955 NA non-coding downstream 113743 21739676 ~ 21739919 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other upstream 1061 21469990 ~ 21538986 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other upstream 165422 21359237 ~ 21374625 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other upstream 335701 21202448 ~ 21204346 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other upstream 568007 20958600 ~ 20972040 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other upstream 1108215 20423281 ~ 20431832 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other downstream 125829 21751762 ~ 21754720 (+)
G65992 LOC107553157,LOC107661339 other downstream 313213 21939146 ~ 21940924 (+)
G65995 NA other downstream 323955 21949888 ~ 21961845 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other downstream 337532 21963465 ~ 21964563 (+)
G66010 naa35,LOC107757435,LOC107752550 other downstream 490350 22116283 ~ 22117834 (+)

Expression


Co-expression Network