LOC122350065 (pold2,LOC107747204)


Basic Information

Item Value
gene id LOC122350065
gene name pold2,LOC107747204
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19100306 ~ 19103847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246260.1
GTTTTCGTAGAGGTCACAGGTGAAATGTTTAGCGGGAGATACTAAAATCAACACAAGAGTAGGTCGACCagattttatgtgtttttacttTATCACCGAATCAAACTAAACCAACAGTATACTGTTGTAAAACATACCAGTCATGTTCTCGGACGTGATCGTGCCGAGGGAGACGCTGCTGTCCGCTCCGGGCTCCGACGAGCCGGTGTTTGCCCGACAGCAGCCCTCGTTCAGCGGCTGCTCGGAGAGATTCCGCCTCGGCGAGCGCAGCTTCAGCCGCCAGTACGCGCACATCTACGCCACCAGACTCATGCAGATGAGGGACATCCTCACCGACAGAGCCAAGCACAAGTGGGgcgGCGCGGCGCCCGTCCGGAAGCTGTGTGACCTGCAGACGGGTGAACAGTGTGTAATAGTGGGCACCGTATTCAAAAACATGGAGCTGCAGCCCTCCATCCTGAAAGAGATCAGCGAGGAGCACAATCTGTTGCCCCAGCCACCTCGCGCCAAAtacatcagccaatcagatgagCTCATTTTGGAGGATGAGCTGCAAAGGATCAAACTGGAAGGCAACATCGAGGCACCCAAGTTTGTGACAGGCAGCGTAATTGCCATCATGGGTGCAGAGAAGAATGATGGGAAATTCACTGTTGAGGACTTCTGCATGGCCGACCTTCCTCCACAGACACCCAGACAGCCTCTCAGCTCAGACAGGTTTGTGCTTCTTGCCTCTGGCCTGGGGTTGAACGGCAGCAGAGCAGACAGCATGATGGGATTGCAGCTTTTAGTGGACATGGTAACCGGTCAGCTTGGAGATCAGGGGGAGCAGAGCGGAGCAGCATCCATCTCTAGAGTCATACTAGCTGGGAACATGCTGAGTCAAAGCACTCAGGACAAAGACTCAACAACCAAGGCAAAGTACCTGACTAAGAAGACTCAGGCTGGGAGTGTGGAGGCTATCAGACTGCTGGATGAGCTTCTAATGCAGCTAGTGGCCTCTGTATCCGTAGATGTCATGCCCGGACAGTATGACCCAACCAACTACACTCTaccccagcagcccctgcaccgCTGCATGTTCCCTCTGTCTGTGCCCTTCCCCACCCTGCAGCTGGTCAGCAACCCTTACCAAGCCATCGTAGATGGTGTCCGGTTCTTGGGCACATCAGGTCAAAATATCAGTGATATTGTGAAGTACAGCAGCATGGAGGATCATCTGGAAATACTGGAGAGCACACTGAGACTCCGCCACCTGGCTCCCACAGCGCCGGACACACTAGGCTGTTACCCCTTCTATCAGAAAGACCCCTTTATTATGGAAGAGTGCCCTCATGTGTACTTCAGCGGAAATGCACCGAGCTACCAAAGTAAACGAGTCACAGGACCTGAAGGACAGGATGTTGTCCTGGTAGCGATCCCAGAGTTCAGCAGCACACAGACGGCCTGTCTTGTGAACCTGCGCACCTTGGAGTGCGAGCCAGTCTGCTTCTCCTCTTTTTCCACAGAGGATGGCGAGGACAACGAGATGAATGTCAGCCATTAAACACTCACTTGTTTCTGTTGTCGTGCTGTTTGTTAATAAAGCTCCCTCTTTTGTATAGAAA

Function

symbol description
pold2 Predicted to enable DNA binding activity. Predicted to be involved in DNA strand elongation involved in DNA replication. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD2 (DNA polymerase delta 2, accessory subunit).

NR:

description
PREDICTED: DNA polymerase delta subunit 2

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K02328 POLD2; DNA polymerase delta subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246260.1 True 1607 mRNA 0.53 11 19100306 19103847

Neighbor

gene id symbol gene type direction distance location
LOC122351071 slc7a4 coding upstream 10046 19081597 ~ 19090260 (+)
glt1d1 glt1d1,LOC107676618,LOC107659266 coding upstream 77014 18996469 ~ 19023292 (+)
si:dkeyp-14d3.1 si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC107753136 coding upstream 158629 18761647 ~ 18941677 (+)
si:ch211-158d24.4 NA coding upstream 371170 18725783 ~ 18729136 (+)
arpc5la arpc5la,LOC107571143,LOC107728439,LOC107550963,LOC107676626,LOC107753090,LOC108411248 coding upstream 421480 18675319 ~ 18678826 (+)
LOC122350746 pqbp1,LOC107702814,LOC107683912,LOC107747222 coding downstream 1206 19105053 ~ 19106870 (+)
LOC122349950 adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107550971,LOC107753091,LOC107703147 coding downstream 92603 19196450 ~ 19200081 (+)
slc7a4 slc7a4,LOC106579925 coding downstream 145874 19249721 ~ 19256112 (+)
sf3a1 sf3a1,LOC107550953,LOC107564451 coding downstream 158094 19261941 ~ 19267105 (+)
pold2 pold2,LOC107747204 coding downstream 163505 19267352 ~ 19270870 (+)
G64910 NA non-coding upstream 425962 18673967 ~ 18674344 (+)
G64889 NA non-coding upstream 482122 18616978 ~ 18618184 (+)
G64878 NA non-coding upstream 648942 18451042 ~ 18451364 (+)
G64862 NA non-coding upstream 709095 18390674 ~ 18391211 (+)
G64858 NA non-coding upstream 733196 18366570 ~ 18367110 (+)
G65108 NA non-coding downstream 79843 19183690 ~ 19347044 (+)
G65074 NA non-coding downstream 120722 19224569 ~ 19233384 (+)
G65119 NA non-coding downstream 301809 19405656 ~ 19482043 (+)
G65111 NA non-coding downstream 320172 19424019 ~ 19425722 (+)
G65267 NA non-coding downstream 453697 19557544 ~ 19558486 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 4235 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 378060 18695454 ~ 18722246 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other upstream 499822 18565699 ~ 18600484 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other upstream 635759 18460051 ~ 18464547 (+)
sb:cb288 NA other upstream 676501 18418948 ~ 18423805 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other downstream 16097 19119944 ~ 19152305 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other downstream 96141 19199988 ~ 19201687 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other downstream 168245 19272092 ~ 19273770 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 926187 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 1031272 20135119 ~ 20139364 (+)

Expression


Co-expression Network