bmp1a (bmp1a,LOC107710833,LOC107661342,LOC107678424,LOC108426680)


Basic Information

Item Value
gene id bmp1a
gene name bmp1a,LOC107710833,LOC107661342,LOC107678424,LOC108426680
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21855648 ~ 21919678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246270.1
TCTCTCTCCGTCCGTACCTCTATTCCTGCTCCACTAGCCCAATCATGGACCTCGCAGCGAGGTGTGCGTTCCTGCTCTCCAGCTTCGCCGTGCTCGCAGCGCTCGATCTGGACGCGGTCGACCCCGACTACTACGTGGAGACCGGCAGCCCGTCAGATGCGATCGACTACAAGGATCCCTGCAAAGCCGttgctTATCTGGGAGATATTGCACTGGATGAGGAAGACCTGCGGATGTTTAAAGTGGATCGCATTGTGAATTTAGCAGAGAGAACGGTCACAGTTCTGAACCACACAGATGCTGGTTCACTTTCCAATGAGACGAGTACAAACAATACGGCGTCCCATCGCAGGAAGAGGGCAGCGACGTCGAGACCTGAGCGAATTTGGCCCGAGGGCGTCATTCCTTACGTCATCAGCGGGAACTTCAGCGGTAGCCAGAGAGCCATATTCAGACAGGCCATGAGACACTGGGAAAAACACACATGTGTGACGTTCATCGAGAGAACGACAGAAGAGAGCTACATCGTCTTCACCTACCGGCCGTGTGGGTGCTGTTCGTTTGTGGGCCGGAGAGGAGGGGTTCCGCAGGCCATATCCATCGGGAAGAACTGTGATAAGTTTGGGATCGTGGTCCATGAGCTGGGTCACGTGATCGGATTCTGGCATGAGCACACGCGACCCGACAGAGACGATCATGTCAGAATCATACAGGAAAACATTCAGCCAgGACAGGAGTACAACTTCTTAGAGATGGAGCCTGGTCAAGTGGACTCACTCGGAGAGGTCTATGACTTCGACAGCATCATGCACTATGCAAGAAACACTTTCTCCAGaGGGATATTTTTGGACACCATTCTGCCACGATATGACGTGAACGGAGTTCGGCCGCCCATCGGTCAGAGGACCAGGCTGAGCAAAGGAGACATCTCACAGGCACGCAAACTTTACAAGTGTCCAAAATGTGGAGACAGTTTGCAGGAGAGCAGTGGAAACTTCTCTTCACCTGGTTTTCCCAATGGTTATTCAGCATATATGCACTGCATATGGAGAATTTCAGTCACACCGGGAGAAAAGATCATTCTGAACTTTACATCTATGGATTTGTACCGGAGTCATTTGTGCTGGTATGATCACGTGGAGATCAGAGATGGATATTGGAGGAAAGCGCCACTGAAAGGTCGATTCTGTGGGGATAAATTACCTGAGCCGATCGTCTCTACAGACAGTCGTCTTTGGATTGAGTTTCGCAGCAGCAGCAACTGGGTGGGAAAGGGCTTCTCTGCTGTTTACGAAGCTATTTGCGGTGGAGAGGTGAAGAAAGACAATGGACAGATTCAGTCTCCGAACTACCCAGACGACTACAGACCtaacaaagtgtgtgtgtggaagatCACTGTGGCTCAGGGTTACCACGTAGGCCTTACCTTCCAGTCTTTTGAGATCGAGAGGCACGATAACTGTGCGTATGACTACCTGGAGGTTCGAGATGGGAACTCCGAAAGCAGCCCGCTGTTGGGTAGATTCTGTGGTTATGACAAACCCGACGATATTAAATCCAGTTCCAACCAGCTCTGGATGAGGTTCGTGTCTGACGGTTCTGTCAACAAGGCCGGGTTTGCTGCTAATTTCTTCAAAGAAATGGACGAGTGCTCCAGACCCGACAACGGTCGCTGTGAGCAGCGCTGTGTCAACACCCTCGGTAGTTACAAGTGTGCCTGTGACCCTGGGTACGAGCTGGCGGCGGACAAGCGGAGTTGCGAGGCTGCCTGTGGTGGTTTCATCACCAAGCTGAACGGGTCCATCACCAGTCCAGGCTGGCCCAAAGAGTATCCTCCCAACAAGAACTGCATCTGGCAGCTGGTGGCGCCCACGCAGTACCGCATCACGCTGCTCTTCGACGTCTTCGAGACGGAGGGGAACGATGTTTGTAAATATGACTTTGTTGAGGTGAGAAGCGGTCTGTCGGCCGACTCCAGACTGCACGGGAAGTTCTGCGGAGCGGAGAAACCGGAGGCCATCACCTCTCAGTACAACAACATGCGCATTGAGTTTAAATCTGACAACACCGTCTCCAAGAAGGGCTTTAAGGCCCAGTTCTTCTCAGATAAAGACGAGTGCTCTAAGGAGAACGGCGGATGTCAGCATGAATGTGTGAACACCTTTGGCAGCTACAGTTGTCAGTGCAGAAGTGGCTTCGTtctgcatgaaaacaaacatgactGCAAGGAagCCGGCTGTGATCACGTTGTGAACAGCGTGAGCGGGACCATCACCAGCCCCAACTGGCCAGATAAATACCCCAGCAAGAAGGCCTGCACCTGGGCCCTCTCCACCACCCCGGGACATCGGATCAAAATAGCTTTCAATGAAATCGACATGGAGCCTCATCTGGAATGCGCTTATGACCACATTGAGATTTACGACGGTCGGGATGGCAAGGCACCCAGCCTCGGGCGATACTGCGGCACCAAGAAACCTCAACCGATCATATCCACCAGCAACAAGATGTTCATTCGCTTCTTCTCTGATAACTCGGTGCACAAGAAAGGCTTCGAGGCTTCCCATACTGCAGAGTGCGGAGGGCAGCTGAAAGCGGAGGTGAAAACTAAAGACCTATACTCTCATGCCCAGTTTGGTGATAATAACTACCCCGGGGCGTCAGACTGCCAGTGGGTGATCACAGCAGAGAAGGGCTACGGCGTGGAGCTCATCTTCCAGACCTTCGAAATCGAGGAGGAGGCCGACTGTGGCTATGATTACATGGAGCTGTTTGACGGGGCGGACACCAAATCACCCAGACTAGGCCGTTACTGTGGATCAGGGCCTCCAGAGGAGATCTACTCTGCCGGTGACTCTATCGTCATCAAATTCCGGTCAGACGATACCATCAATAAGAAGGGCTTCCACGTGCGTTACACCAGCACCAAGTTTCAGGACACACTCCACTCCCGTAAGAAGTGACCCCTAGTGGCCGGGAGGGGCCGTGCAGGGCCTAGGGGGAAGCGAAAGGGCCCCAGGGGGAGGGCCTTGCCCCTCGCTCGGAGCCCCCCGGCCACCAAGAACACCCAGACTCGACGGACCAGCCGCAAGAACGCCAACCGCACCTCAGTAGTTCACAGGGGTTCTGGCATCCCCTACTGACTGTGAGGAGTAAAGCCATTCCGCAGTAGACCttgtttttaccttttttttttattattacatttgggGTAAGATGTGGAGGGCGGTGGGGGCGGGGTTGGGTAGGGGTGGAATGTATTCAGTTGCTGGATACCAATAAAGGGGCGAAATCAAATGTGGACGTAATGGCACCAGCATTTGTAATAACTCGTTTTTTCCTGGCCAGTAGTCCAGAAGGTTCCCTGCCGAAATGATCACTCTCCAGGAGGTTTTCCAGAATCAGATATCatattaaaagactaataaacaACACGTGGCCCATGTCTGATGGCTGTTAATTGCTTTTGCATAAAAACAGGATGCTATGGTGGAAAATGCTTAGCTTCTGTTAAGAttaagcacacttttttttcaaggtCTTGATAATTTGGTGTTGTCCTTGTAATACTCAACAATCATGAACAAATTAGGCACAATCGCATGGAAATTGGCAGGACATCCCactgcttttttctttaatcttcCTTTTCAGGCTCTTTCCTCACAGAAGGTGGTTTTCAAAACGTGACTAGTGTAAGGACCTCAGTCAGGGTAATCAGTgtaaaaaaacctcaaaattaGACAAAAAAGAGATAATTCAGGcaataattctgtcatcatttgcttcAAGTAAatgacttgctttcttctgtgaaacaaaaatgaaggCATTTGGAAGACAGTATTTGTCCCTACAATGACCCCAAAACAACTTAAAGTTGGACCCCATCGACTTTAGTTGtatggaccaaaaaaaaaaatctcaaaatgtctttctgtgtgtgttccacagaagaaagaaagtaaatgaTGCCAATCTCGTTTTGGTAAATAACCTCTTCAAGACCTATAACCTATTGCGCAAACTATAACGTTTAATACGATCTTGAGTTAAAACCTGAAAGGACAGTACTTTTCAGCATGGATGTCCTATTGCTAGATAGATGTTGCTCTTACACCGCTGACTATGGGAAAActgttaaaactgtaaaatgttcaCTTGTACCAATAATGTACCTCAGCGTATGGGAGAGCGTTGGGATGGTGCTATTTCAAACGAGTCCTTTCAGTCGCTCTTTCTCTGTTGATATCCAGTGTCAGCTGAGAAAAGAGCATGTTTGATGTCAAATCTGTGCTGAATAGCGTGATCTCCGGGGGTTGATCATTTGATCTAAAGTGTTGGCGCACTCCATTTCCAGGATCATCCCTGTGAAGTGTGCTGCTCCTCACCTCTCTCGCTTTCCGTCTCCTGCAGAACTCCTTCAAAGGCCGTTGACTTGGTCTCCTCTGTCTCAACCGCTCTTTTCATCACACTCTATCATTTCTCACACCTGTTTGCCTTTGTGGATTTACCTAAAGCTCCTTTAAATCTCAGGTTCAGGATATCTGATTGTTGCTACCCACTGAATCATTCCAAGACACTAGACTTGCGGGTTACTCTTTGACTTGGACGTGTGAAATCCAGGAAGGCAAATGATGAGGATTATGGGTTTTAGAGGACACACTTTGggcttttaaaaggttttagaCAATGCCTTCCACCCGAACCTTGAATCAGTTCACCTCAAGCCACGAGTGCTGTGACCAAACAAGTTGCTCAGTATGCGATCTTGCAAGCTTACCCTCATACTCAAGATCGACTAACTTCTATCCTAGTTCTTCAAATGgattatattttgtgtgtctAAGATACCCAGTTTAGCATCTCTGTATTTGAATATGCTTCCTAGCATAGCTTTTTAGAGTAGTGGAGCACTTGTACATTTTGCTAATCGAAGCACATCCTCCTAagcattattaatgtttttaatgcccATGTTATTTCTTGTTAGAAATAGTGTTTTGTGGGCGAATGCGGGCTTCAAATGATCTGTTTTAGCACATGTTACCTCAGCATAAATAGTGTATGCTTGATTTCTTCACCCTGACTGGCCTTCCCACAAAAGACTTGGtacatgtttatgcattttatcatatgtatgtatgtaaatatgtattaatgtattcaAAGTTCACTAAACCATAGATAACTTGATGAGAACTAAGGCTATGTGTAATTGCAGACAAaagatgcaatttatttatattgtatagcTAATTTTCACCTATGTATTGCAAATAGTGTTAACAAGTGCTTctatttcataaaatgttattttcattttgaaa

Function

symbol description
bmp1a Enables peptidase activity. Acts upstream of or within several processes, including collagen biosynthetic process; determination of ventral identity; and protein phosphopantetheinylation. Is expressed in several structures, including alar plate midbrain region; central nervous system; mesenchyme median fin fold; mesoderm; and optic vesicle. Used to study osteogenesis imperfecta and osteogenesis imperfecta type 13. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 13. Orthologous to human BMP1 (bone morphogenetic protein 1).

NR:

description
bone morphogenetic protein 1-like

GO:

id name namespace
GO:0001503 ossification biological_process
GO:0048264 determination of ventral identity biological_process
GO:0006508 proteolysis biological_process
GO:0033333 fin development biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005515 protein binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K05502 BMP1, TLD; bone morphogenetic protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246270.1 True 5330 mRNA 0.48 20 21855648 21919678

Neighbor

gene id symbol gene type direction distance location
rab7b LOC107678421,LOC107562649,LOC107553159,LOC107728368,LOC103037223 coding downstream 90143 21757675 ~ 21765505 (-)
prkg1l LOC107553164,LOC107710842,LOC107678373,LOC107562631,LOC107665193,LOC107716608,LOC107728357 coding downstream 103968 21730654 ~ 21751680 (-)
acsl2 acsl2,LOC107710839,LOC107665192,LOC107553163,LOC107716609,LOC107678403,LOC108426687 coding downstream 126431 21697808 ~ 21729217 (-)
LOC122350763 ido1,LOC107553133,LOC107665200,LOC107710826,LOC107678376,LOC107718947 coding downstream 342328 21506779 ~ 21513320 (-)
stc1 stc1,LOC107747716,LOC107665189,LOC107553168,LOC107559448,LOC107678391 coding downstream 423527 21416772 ~ 21432121 (-)
kansl3 kansl3,LOC107678435,LOC107661339,LOC107710832 coding upstream 4034 21923712 ~ 21943417 (-)
LOC122350992 LOC107756834,LOC107691567,LOC107548280,LOC107702864 coding upstream 120393 22040071 ~ 22054375 (-)
LOC122349886 NA coding upstream 225845 22145523 ~ 22146997 (-)
LOC122349876 NA coding upstream 240308 22159986 ~ 22161558 (-)
naa35 naa35,LOC107757435,LOC107752550 coding upstream 363671 22283349 ~ 22290847 (-)
G66071 NA non-coding downstream 102033 21751768 ~ 21753615 (-)
G66046 NA non-coding downstream 210965 21571117 ~ 21644683 (-)
G66047 NA non-coding downstream 217300 21603675 ~ 21638348 (-)
G65871 NA non-coding downstream 481057 21373243 ~ 21374591 (-)
G65897 entpd4,LOC107678413,LOC107747713,LOC107698120,LOC107553130 non-coding downstream 499932 21353762 ~ 21355716 (-)
G66115 NA non-coding upstream 90965 22010643 ~ 22013678 (-)
LOC122350974 NA non-coding upstream 154009 22073687 ~ 22074471 (-)
G66131 NA non-coding upstream 373761 22293439 ~ 22295953 (-)
G66143 NA non-coding upstream 445223 22364901 ~ 22365113 (-)
G66142 NA non-coding upstream 445598 22365276 ~ 22365682 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other downstream 79028 21771468 ~ 21776620 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other downstream 829817 21014993 ~ 21025831 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other downstream 1132493 20718940 ~ 20723155 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 1434352 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 1721303 20118007 ~ 20134345 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 94295 22013973 ~ 22025791 (-)
G66116 gfpt1,LOC107710818,LOC107678434,LOC107562636,LOC107553119,LOC107752562,LOC108426669,LOC103362312,LOC101170101 other upstream 109054 22028732 ~ 22031993 (-)
LOC122350973 dmtn,LOC107586118,LOC107687659,LOC107720576,LOC107553712,LOC107705088,LOC107571963,LOC107702870,LOC107723027 other upstream 140337 22060015 ~ 22068757 (-)
antxr1a antxrl,antxr1a,antxr1,LOC107661337,LOC107710819,LOC107562635,LOC108265351 other upstream 155332 22075010 ~ 22110087 (-)
gfpt1 gfpt1,LOC107678434,LOC107553119,LOC108426669,LOC107710818,LOC107752562,LOC103362312,LOC101170101,LOC107562636 other upstream 323524 22243202 ~ 22265861 (-)

Expression


Co-expression Network