LOC122350094


Basic Information

Item Value
gene id LOC122350094
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1244834 ~ 1248364 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246296.1
TAAGTCTTTGAGCCTAACAAACGGCGACGTCTCAGAACTAGTGTCTGATTTTGATCACAATTTGATTTTGTTAAATCAGCTGAGGTCAGACAGGAAAGTCACTCGTGGGCACTAATGGGCTCCTGTGgtgtgatgtcacttcctgctgGAGCGCTCAGGCCTCAATCAGAGTGTGTGATGGATGGGACGCTCTGCTCGTGGGCACACACTTGTTTGCGTGACTTCTCATAGTTTTCATACAAAGCCCCAGACTGAGCTCCGAGCAGCTGAGATGCGAGTCCTGGTCCTGATCCTGCTCTCGTCGCTGTGTGCTCCAGACCCTGCGCCGCTGAAAGACGCCACGGTCTATCTGAAGCCATACGCTTATTTACCTTCATCAAGCAGCGCTGAGCCTCAAGGGATTCAAGATGAGCAAATCAATAAGGCTCTCAGGATCTTCCAGCGTCATCAGGACATCAGAGCTCTGACCGTGAAGAGAGCGGCCCGCTGCGGTCTGAGCGAATCCTTCAGCCGTATGCTGACATACAGAGTCCTCGGTCAGTGGCGTAAGAAGAGACTGACGTACCGCTTCTATAACCACGCTCCGGCTCTGGGCTGGTCCGGGACACGAGCAGCGGTCCGCACGGCCTTCAGTTACTGGAGCGCGGTCAGTCCGCTTCTCTTCCTGGAGGTCAGCTCAGGTCACGCCGACATCAACATCGCCTTCCACCGGAGAGACCAGGGATGCCCGGTAGCGTTCGACGGACCCGGGCAGGTTCTGGGACACGCCGAGGGCCCGGAGTCTGGCGCGGTTCATTTTGACGCAGACGAGGTTTGGACAGAGGGGCAGAGTTACGGAGCAAACCTGCGAATCGTAGCGGCCCATGAGATAGGCCACGCCCTGGGACTAGGCCACTCCCAGTTCCCTGGTGCGCTCATGAGCCCTGTGTTCACCGGATACCAGCGCGACTTCAGACTGCACCCCGATGACATCCGCGGCATTCAGGCTCTGTACGGTAAGAGCATGCACTCATGCTTCTGTCTGACCGTTCAAAGGCCAAAGCTGACCTCAGCTCTTGCAGGAAAACCTGTTGAGAAAGCATCCGGCGCTCAGAGAAAGCCCATGCCGGACCCCTGCTCCGCGGGACTGGACGCCCTCATGCTGGGGCCTCTTCAGAAGACGTTTGCATTCAGGGGTCATCACGTGTGGACCGTCTCAGATTTGGGAGATAGCGCTCCGATTTCCATCAGTACTTTGTGGAAAGAACTGCCCGGGAACATCAATGCAGCTGTTCACTCACAAAGAACCAACAAATCCTACTTTCTGAAAGGAGATCAAGTCTGGAGATATTCGGGCTTTAAACTGGACCACGGCTACCCAAAGCGCCTCGCCATCCCCTCCCACATCCAGGCGGCGTTCTTCCTCCGGAGCCGGCGAGCGCTCGTCTTCATCAAGGGATCCGAGTACTGGCTCTGGGATGAACTGGGATCAGCCAAACCTCTGAAGCTCCGCCCCAGGCTCCTGTCTGAGCTCAGCTCCGGTTTGCCCAGGGATCCGGACGCTGCCTTCAGCTCGAGCGACGGACGCGTCCATGTGTTCAGCCGAGAGCGCTTCTGGAGCCTGAGTCCCGCTCTGACGCCGCTCCGATCCACAGAGACATGGATGCGCTGTGACGACTGA
>XM_043246297.1
TAAGTCTTTGAGCCTAACAAACGGCGACGTCTCAGAACTAGTGTCTGATTTTGATCACAATTTGATTTTGTTAAATCAGCTGAGGTCAGACAGGAAAGTCACTCGTGGGCACTAATGGGCTCCTGTGgtgtgatgtcacttcctgctgGAGCGCTCAGGCCTCAATCAGAGTGTGTGATGGATGGGACGCTCTGCTCGTGGGCACACACTTGTTTGCGTGACTTCTCATAGTTTTCATACAAAGCCCCAGACTGAGCTCCGAGCAGCTGAGATGCGAGTCCTGGTCCTGATCCTGCTCTCGTCGCTGTGTGCTCCAGACCCTGCGCCGCTGAAAGACGCCACGGTCTATCTGAAGCCATACGCTTATTTACCTTCATCAAGCAGCGCTGAGCCTCAAGGGATTCAAGATGAGCAAATCAATAAGGCTCTCAGGATCTTCCAGCGTCATCAGGACATCAGAGCTCTGACCGTGAAGAGAGCGGCCCGCTGCGGTCTGAGCGAATCCTTCAGCCGTATGCTGACATACAGAGTCCTCGGTCAGTGGCGTAAGAAGAGACTGACGTACCGCTTCTATAACCACGCTCCGGCTCTGGGCTGGTCCGGGACACGAGCAGCGGTCCGCACGGCCTTCAGTTACTGGAGCGCGGTCAGTCCGCTTCTCTTCCTGGAGGTCAGCTCAGGTCACGCCGACATCAACATCGCCTTCCACCGGAGAGACCAGGGATGCCCGGTAGCGTTCGACGGACCCGGGCAGGTTCTGGGACACGCCGAGGGCCCGGAGTCTGGCGCGGTTCATTTTGACGCAGACGAGGTTTGGACAGAGGGGCAGAGTTACGGAGCAAACCTGCGAATCGTAGCGGCCCATGAGATAGGCCACGCCCTGGGACTAGGCCACTCCCAGTTCCCTGGTGCGCTCATGAGCCCTGTGTTCACCGGATACCAGCGCGACTTCAGACTGCACCCCGATGACATCCGCGGCATTCAGGCTCTGTACGGAAAACCTGTTGAGAAAGCATCCGGCGCTCAGAGAAAGCCCATGCCGGACCCCTGCTCCGCGGGACTGGACGCCCTCATGCTGGGGCCTCTTCAGAAGACGTTTGCATTCAGGGGTCATCACGTGTGGACCGTCTCAGATTTGGGAGATAGCGCTCCGATTTCCATCAGTACTTTGTGGAAAGAACTGCCCGGGAACATCAATGCAGCTGTTCACTCACAAAGAACCAACAAATCCTACTTTCTGAAAGGAGATCAAGTCTGGAGATATTCGGGCTTTAAACTGGACCACGGCTACCCAAAGCGCCTCGCCATCCCCTCCCACATCCAGGCGGCGTTCTTCCTCCGGAGCCGGCGAGCGCTCGTCTTCATCAAGGGATCCGAGTACTGGCTCTGGGATGAACTGGGATCAGCCAAACCTCTGAAGCTCCGCCCCAGGCTCCTGTCTGAGCTCAGCTCCGGTTTGCCCAGGGATCCGGACGCTGCCTTCAGCTCGAGCGACGGACGCGTCCATGTGTTCAGCCGAGAGCGCTTCTGGAGCCTGAGTCCCGCTCTGACGCCGCTCCGATCCACAGAGACATGGATGCGCTGTGACGACTGA
>XM_043246298.1
TAAGTCTTTGAGCCTAACAAACGGCGACGTCTCAGAACTAGTGTCTGATTTTGATCACAATTTGATTTTGTTAAATCAGCTGAGGTCAGACAGGAAAGTCACTCGTGGGCACTAATGGGCTCCTGTGgtgtgatgtcacttcctgctgGAGCGCTCAGGCCTCAATCAGAGTGTGTGATGGATGGGACGCTCTGCTCGTGGGCACACACTTGTTTGCGTGACTTCTCATAGTTTTCATACAAAGCCCCAGACTGAGCTCCGAGCAGCTGAGATGCGAGTCCTGGTCCTGATCCTGCTCTCGTCGCTGTGTGCTCCAGACCCTGCGCCGCTGAAAGACGCCACGGTCTATCTGAAGCCATACGCTTATTTACCTTCATCAAGCAGCGCTGAGCCTCAAGGGATTCAAGATGAGCAAATCAATAAGGCTCTCAGCTCTGAGATCTCTGATGTGTGTAATGTTTCAGGATCTTCCAGCGTCATCAGGACATCAGAGCTCTGACCGTGAAGAGAGCGGCCCGCTGCGGTCTGAGCGAATCCTTCAGCCGTATGCTGACATACAGAGTCCTCGGTCAGTGGCGTAAGAAGAGACTGACGTACCGCTTCTATAACCACGCTCCGGCTCTGGGCTGGTCCGGGACACGAGCAGCGGTCCGCACGGCCTTCAGTTACTGGAGCGCGGTCAGTCCGCTTCTCTTCCTGGAGGTCAGCTCAGGTCACGCCGACATCAACATCGCCTTCCACCGGAGAGACCAGGGATGCCCGGTAGCGTTCGACGGACCCGGGCAGGTTCTGGGACACGCCGAGGGCCCGGAGTCTGGCGCGGTTCATTTTGACGCAGACGAGGTTTGGACAGAGGGGCAGAGTTACGGAGCAAACCTGCGAATCGTAGCGGCCCATGAGATAGGCCACGCCCTGGGACTAGGCCACTCCCAGTTCCCTGGTGCGCTCATGAGCCCTGTGTTCACCGGATACCAGCGCGACTTCAGACTGCACCCCGATGACATCCGCGGCATTCAGGCTCTGTACGGTAAGAGCATGCACTCATGCTTCTGTCTGACCGTTCAAAGGCCAAAGCTGACCTCAGCTCTTGCAGGAAAACCTGTTGAGAAAGCATCCGGCGCTCAGAGAAAGCCCATGCCGGACCCCTGCTCCGCGGGACTGGACGCCCTCATGCTGGGGCCTCTTCAGAAGACGTTTGCATTCAGGGGTCATCACGTGTGGACCGTCTCAGATTTGGGAGATAGCGCTCCGATTTCCATCAGTACTTTGTGGAAAGAACTGCCCGGGAACATCAATGCAGCTGTTCACTCACAAAGAACCAACAAATCCTACTTTCTGAAAGGAGATCAAGTCTGGAGATATTCGGGCTTTAAACTGGACCACGGCTACCCAAAGCGCCTCGCCATCCCCTCCCACATCCAGGCGGCGTTCTTCCTCCGGAGCCGGCGAGCGCTCGTCTTCATCAAGGGATCCGAGTACTGGCTCTGGGATGAACTGGGATCAGCCAAACCTCTGAAGCTCCGCCCCAGGCTCCTGTCTGAGCTCAGCTCCGGTTTGCCCAGGGATCCGGACGCTGCCTTCAGCTCGAGCGACGGACGCGTCCATGTGTTCAGCCGAGAGCGCTTCTGGAGCCTGAGTCCCGCTCTGACGCCGCTCCGATCCACAGAGACATGGATGCGCTGTGACGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246296.1 False 1660 mRNA 0.57 8 1244834 1248364
XM_043246297.1 False 1594 mRNA 0.57 9 1244834 1248364
XM_043246298.1 True 1692 mRNA 0.57 8 1244834 1248364

Neighbor

gene id symbol gene type direction distance location
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 76377 1160400 ~ 1168457 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 186907 1016890 ~ 1057927 (-)
prr16 LOC107713553 coding downstream 240421 998648 ~ 1004413 (-)
LOC122350790 lox,LOC107726222,LOC107704580 coding downstream 256274 981634 ~ 988560 (-)
LOC122350969 sncaip,LOC107577394 coding downstream 264801 966169 ~ 980033 (-)
pym1 LOC107701384 coding upstream 1696 1250060 ~ 1252516 (-)
LOC122350264 dgcr6,LOC107572069,LOC107721026,LOC105899531 coding upstream 198636 1447000 ~ 1454530 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 246141 1494505 ~ 1523464 (-)
LOC122350659 NA coding upstream 379289 1627653 ~ 1646362 (-)
LOC122349997 NA coding upstream 461994 1710358 ~ 1714221 (-)
G60170 NA non-coding downstream 26032 1214307 ~ 1218802 (-)
G60154 NA non-coding downstream 60185 1184308 ~ 1184649 (-)
G60153 NA non-coding downstream 122601 1120928 ~ 1122233 (-)
G60133 NA non-coding downstream 179634 1064397 ~ 1065200 (-)
G60131 NA non-coding downstream 182596 1061093 ~ 1062238 (-)
G60166 LOC107701385,LOC107573793,LOC107749411,LOC107572966,LOC107728257,LOC107661167 non-coding upstream 16235 1264599 ~ 1266232 (-)
G60187 NA non-coding upstream 20434 1268798 ~ 1269384 (-)
G60188 NA non-coding upstream 30636 1279000 ~ 1279303 (-)
G60189 NA non-coding upstream 63521 1311885 ~ 1312144 (-)
G60192 NA non-coding upstream 103603 1351967 ~ 1449930 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 85548 1140698 ~ 1159286 (-)
G60098 NA other downstream 106682 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 505462 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 512990 723145 ~ 731844 (-)
ccl27a NA other downstream 673861 565886 ~ 570973 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other upstream 100807 1349171 ~ 1356953 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 313182 1561546 ~ 1606609 (-)
G60220 NA other upstream 328441 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 484500 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 500698 1749062 ~ 1762549 (-)

Expression


Co-expression Network