LOC122350109 (LOC107743114,LOC107552217,LOC107674346)


Basic Information

Item Value
gene id LOC122350109
gene name LOC107743114,LOC107552217,LOC107674346
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3924861 ~ 3931488 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246329.1
GACGCAGGCCGTATTCACCCATTCTCCAGCCTCTAGGCGGAACCACTGCCGTTCACAGCGATTAATGACACAGATTGAGGTGGTGTGAAGCCTTGGGTCTTCCTAATCGTCACACAATATAGATTGCACGTTTGCGTGGTTTTAACCACTGCTGTCGTCTGTCCAACAACTCCCGGGGGTCTACGATGTGGACCACGTCGTTTTTGTCCGTGGCTGTCGTCGTCTGCGCCGTGAGTAGCGACAGAAGTCTGGAGGACAAGGGCCGCGTTGAGTTGCAGCGCGTGCGTGAACTGTCTCGGCAGCCGCGTTACGGCGCGTGCTGGTCTCGCGCGCTGGAGAAAATACAGTCGAGCTGCAAAGAGTTCAGTGACGATGTGCAGAGCAAGATCGCCTTGTCCTTCACGCACTGCCACCTGCAAAGGTCAGGTCGTAGTTTCCCAGAGTGTCCTGAAGATAGTGATGTCAAAACCTGCACCCAAGACATGGATCCTGTGGCCTTCAATACCTACACTGAGTTTTTTACGCACGCACACAGTATATGTCATTACTTGCAGAGCGAGCGCTGGCAACAAAGAGCTGAGAACACCATTCACCGGTTGACTGAGAGTTCGGCGGGGGTTGCAGAGCAGTTGGCCTCCACCCAGCGGATGGCAGAAGATCTGGTCGTGGCCCAAAGTGCCGCGTTGAAATCCCAGGAAAGCATCCTTCGCAATGGAGAGGAACTCAAGAGCACCCTGCAGGACTCCACTCAAGGCCTGAGAGATGTGTTTGCGGAGATGAGGCATTCTGCACAGGAGCAGCAGGTGGCATTTGCGGAAATCTTTAACCGCGTAGCTTTCCTCCAGAGCTTCATCATGTCTGAAACGCACACGTTTAGTTCTCTTTTTTACAACACCCTGGGCTTTGCCGCCTCTTTCCTTCTGACTTCTGTCCGGCGCACAGCTGGAGCAAGatttttcctttttggacTTGTGGCTTTGAATGTATACTTCGAAAGAATGATCTGCAAGATGGTTTTGGAAAACGAGGACCATGGTTTTGAACAGATGGAGAAAATCGTCTTTTTAGTTGGTCTTCTAAGAAAATCCAtggttctgattggctgccttGTTCTGCTGTACTTCGCTCTGCGCTACCGCAACATCAGCCGAGAAAGTCTTGAAATTCTGAAGGAACTCAAAGAGACTCACTCTGATCTTCAGAAGGCCTTGCAAAAAGCAGAATGTCTCTCGGCGTCTGTGGACGAGTGGAAGAGGTCCAGACAAAAACGTTGGCAGAGCAAGTGGGAAGAGAGAGATGACGGTTTAGTTGTTCTGCATCCCTCTAGCGTCGTGAATGCGGCCCTGTCTGCATCCGCTGCATCTCCAGACGCCAGACAACTTGAGACACAGAGCACCTCAGAAGCCCTGAAGAGACGTCAGCGGCGCACGTCAGGGGCTCGTTCACGGACGTCTTCTGTCACGGTGTACAGTGTGCTGGTGGATGACAATGAGCCGAGGTATAGCCTGAGAAGTCGGAAATCTTTGTGTGGCCCGGATGTTCACGGAGTGAAGGACTGATGTATAATATCAGAAAAAGGTTCGATTGCCTTCTGAAGATCTGATAGAGGGACTAACAATTGTTCTGAATCATTAGATCAAAGACTTCCGAAAGATGGAAGATCATAGACATTTTGAATGTGCATTCTTCCTTTTTAATCCTTTTAATGCTTCCTTAAACGTTATATTTGTCgttttttccagattttttttacaaaaccaataaataaattccaGTGTAACAGCTGAAGT
>XR_006251567.1
CAAGACGCAGGCCGTATTCACCCATTCTCCAGCCTCTAGGCGGAACCACTGCCGTTCACAGCGATTAATGACACAGATTGAGGTGGTGTGAAGCCTTGGGTCTTCCTAATCGTCACACAATATAGATTGCACGTTTGCGTGGTTTTAACCACTGCTGTCGTCTGTCCAACAACTCCCGGGGGTCTACGATGTGGACCACGTCGTTTTTGTCCGTGGCTGTCGTCGTCTGCGCCGTGAGTAGCGACAGAAGTCTGGAGGACAAGGGCCGCGTTGAGTTGCAGCGCGTGCGTGAACTGTCTCGGCAGCCGCGTTACGGCGCGTGCTGGTCTCGCGCGCTGGAGAAAATACAGTCGAGCTGCAAAGAGTTCAGTGACGATGTGCAGAGCAAGATCGCCTTGTCCTTCACGCACTGCCACCTGCAAAGGTCAGGTCGTAGTTTCCCAGAGTGTCCTGAAGATAGTGATGTCAAAACCTGCACCCAAGACATGGATCCTGTGGCCTTCAATACCTACACTGAGTTTTTTACGCACGCACACAGTATATGTCATTACTTGCAGAGCGAGCGCTGGCAACAAAGAGCTGAGAACACCATTCACCGGTTGACTGAGAGTTCGGCGGGGGTTGCAGAGCAGTTGGCCTCCACCCAGCGGATGGCAGAAGATCTGGTCGTGGCCCAAAGTGCCGCGTTGAAATCCCAGGAAAGCATCCTTCGCAATGGAGAGGAACTCAAGAGCACCCTGCAGGACTCCACTCAAGGCCTGAGAGATGTGTTTGCGGAGATGAGGCATTCTGCACAGGAGCAGCAGGTGGCATTTGCGGAAATCTTTAACCGCGTAGCTTTCCTCCAGAGCTTCATCATGTCTGAAACGCACACGTTTAGTTCTCTTTTTTACAACACCCTGGGCTTTGCCGCCTCTTTCCTTCTGACTTCTGTCCGGCGCACAGCTGGAGCAAGatttttcctttttggacTTGTGGCTTTGAATGTATACTTCGAAAGAATGATCTGCAAGATGGTTTTGGAAAACGAGGACCATGGTTTTGAACAGATGGAGAAAATCGTCTTTTTAGTTGGTCTTCTAAGAAAATCCAtggttctgattggctgccttGTTCTGCTGTACTTCGCTCTGCGCTACCGCAACATCAGCCGAGAAAGTCTTGAAATTCTGAAGGAACTCAAAGAGACTCACTCTGATCTTCAGAAGGCCTTGCAAAAAGCAGAATGTCTCTCGGCGTCTGTGGACGAGTGGAAGAGGTCCAGACAAAAACGTTGGCAGAGCAAGTGGGAAGAGAGAGATGACGGTTTAGTTGTTCTGCATCCCTCTAGCGTCGTGAATGCGGCCCTGTCTGCATCCGCTGCATCTCCAGACGACAACTTGAGACACAGAGCACCTCAGAAGCCCTGAAGAGACGTCAGCGGCGCACGTCAGGGGCTCGTTCACGGACGTCTTCTGTCACGGTGTACAGTGTGCTGGTGGATGACAATGAGCCGAGGTATAGCCTGAGAAGTCGGAAATCTTTGTGTGGCCCGGATGTTCACGGAGTGAAGGACTGATGTATAATATCAGAAAAAGGTTCGATTGCCTTCTGAAGATCTGATAGAGGGACTAACAATTGTTCTGAATCATTAGATCAAAGACTTCCGAAAGATGGAAGATCATAGACATTTTGAATGTGCATTCTTCCTTTTTAATCCTTTTAATGCTTCCTTAAACGTTATATTTGTCgttttttccagattttttttacaaaaccaataaataaattccaGTGTAACAGCTGAAGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107552217

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246329.1 True 1790 mRNA 0.50 9 3924864 3931488
XR_006251567.1 False 1789 transcript 0.49 9 3924861 3931488

Neighbor

gene id symbol gene type direction distance location
pcsk1nl pcsk1nl,LOC107743122,LOC107552210,LOC107701826,LOC107584871,LOC107674382 coding upstream 78916 3835796 ~ 3845945 (+)
LOC122350007 LOC107552172 coding upstream 90707 3828509 ~ 3834154 (+)
LOC122350989 LOC107751585,LOC107696922,LOC107552208,LOC107584868,LOC107674323,LOC107584869 coding upstream 117014 3800278 ~ 3807847 (+)
slc6a6a slc6a6a,LOC107696920,LOC107552205,LOC107714566,LOC108264963,LOC107674322 coding upstream 159773 3743485 ~ 3765088 (+)
abtb1 abtb1,LOC107674366,LOC107696919,LOC107751593 coding upstream 187757 3726570 ~ 3737104 (+)
fgd1 fgd1,LOC107552218,LOC107727417 coding downstream 1302 3932790 ~ 3979201 (+)
tfe3a tfe3a,LOC107584878,LOC107727418,LOC107743115,LOC107701807,LOC107674333 coding downstream 48291 3979779 ~ 3994876 (+)
cxxc1a cxxc1a,LOC107701818,LOC107743112,LOC107727409,LOC107674299,LOC107577056 coding downstream 76100 4007588 ~ 4012823 (+)
mbd1a LOC107743107,LOC107701816,LOC107552163,LOC107584915,LOC107727404 coding downstream 82426 4013914 ~ 4027702 (+)
abcd1 abcd1,LOC107701814,LOC107743108,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 143530 4075018 ~ 4091029 (+)
G60870 NA non-coding upstream 16061 3907712 ~ 3908800 (+)
G60803 LOC107552212,LOC107701823,LOC107743103,LOC107674315,LOC107727414 non-coding upstream 38988 3884882 ~ 3885873 (+)
G60782 NA non-coding upstream 98445 3824902 ~ 3826416 (+)
G60743 NA non-coding upstream 268929 3654761 ~ 3655932 (+)
LOC122350949 NA non-coding upstream 316884 3607315 ~ 3607977 (+)
G60895 NA non-coding downstream 209121 4140609 ~ 4215206 (+)
G61007 NA non-coding downstream 370184 4301672 ~ 4342107 (+)
G61048 NA non-coding downstream 501510 4432998 ~ 4436499 (+)
G61056 NA non-coding downstream 507520 4439008 ~ 4444416 (+)
G61087 LOC107687770,LOC107743582,LOC107696015,LOC107572510,LOC107738665 non-coding downstream 567389 4498877 ~ 4499407 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other upstream 74304 3848614 ~ 3850557 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 1885025 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 1888881 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 1904827 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 2006490 1915460 ~ 1918371 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 97815 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 1173082 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 1295464 5226952 ~ 5229608 (+)
G61678 LOC107665067,LOC107598994,LOC107757984 other downstream 2824617 6756105 ~ 6766543 (+)
G61713 LOC107550213,LOC107755291,LOC107599058,LOC107700515,LOC107757991,LOC107665059 other downstream 2916993 6848481 ~ 6849711 (+)

Expression


Co-expression Network