nkx3-1 (LOC107710828,LOC107665190)


Basic Information

Item Value
gene id nkx3-1
gene name LOC107710828,LOC107665190
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21387691 ~ 21389140 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246358.1
cacactcacacacacacactcgtgtagTCCGTGTAGCCGCACGAGACGCGTCTGTTTTGTCCATCAGCGAGCAGCACCGATGACGTAGCGCGGGACGCTCCTCGGCCGGATGGAGAGACAGCACGCTCACGCGCTATTTAAAGTCAAGCGGCTCAGCCCGAGAGTGAAAGTGACAACTACTTACCCCGGGGACGGAGAAGGCGCTCTATCCTCACCTGCATCGGGAATTTAGCGACGGAGATGGCGGCTTCAAACAAGCAGCTGACGTCTTTTTTCATAGAGGACATTTTATCCTTAAAAGAGGGTAAAAGAGAGGAGCCGTGCGCGGACGGGCGAACAGGCACCGAGGACGCGTCGGTTTGCCGGAGCCCTGAGGATAAATCAGAGTCGTCCGCGGGTTTGGCGGGAGGCGGCGGCGGGAAGAAGAAGCGGTCGCGCGCCGCGTTCACGCACCTGCAGGTGCTGGAGCTCGAGAAGAAGTTCAGCCGCCAGCGCTACCTGAGCGCGCCCGAGCGCGCGCACCTCGCGAGCGCGCTGCACCTGACGGAGACGCAGGTGAAGATCTGGTTCCAGAACAGGAGATACAAAACCAAGCGGAGGCAGCTCACCACGGACTTTCAGAAACACGACGCCGCGGCGGGGGCTGCCACCGAGGAGGACTTCCTCAGAGCCTCGCTTCTGGCGACCGTCTACAAATCCTATCCCTACAGGCCTTTCGTGTACGACTTACACGGGCTGAGTGTGTGGAGACCGGCGCTGTGATCACCTTTGGGACATTACCCGGACTTTCTCGTTTTATTGTGAATAGTATTCTTTATTGTTACGGTGATTTTTGTAAAGTATTGTACAGCTTTGTAtcctgtgaaataaaatatttttattaaaggtg

Function

NR:

description
homeobox protein koza-like

GO: NA

KEGG:

id description
K09348 NKX3-1; homeobox protein Nkx-3.1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246358.1 True 889 mRNA 0.56 2 21387691 21389140

Neighbor

gene id symbol gene type direction distance location
LOC122349890 NA coding downstream 155344 21230754 ~ 21232347 (-)
LOC122349897 NA coding downstream 204002 21182724 ~ 21183689 (-)
klhl22 klhl22,LOC107747800,LOC107563177,LOC107698116,LOC107678468,LOC107556236 coding downstream 257917 21106860 ~ 21129774 (-)
LOC122350417 phyhip,LOC107747796,LOC107721105,LOC107698112,LOC107556234,LOC107678475,LOC108426626 coding downstream 444386 20931950 ~ 20943305 (-)
LOC122350675 cox5b1,LOC107698109,LOC107556219,LOC107747804,LOC108426657,LOC107602047,LOC107718706 coding downstream 468591 20917028 ~ 20919100 (-)
nkx2.7 nkx2.7,LOC107710827,LOC107665191,LOC107747717,LOC107553134,LOC107678399,LOC107559447 coding upstream 11437 21400577 ~ 21402547 (-)
stc1 stc1,LOC107747716,LOC107665189,LOC107553168,LOC107559448,LOC107678391 coding upstream 27632 21416772 ~ 21432121 (-)
LOC122350763 ido1,LOC107553133,LOC107665200,LOC107710826,LOC107678376,LOC107718947 coding upstream 117639 21506779 ~ 21513320 (-)
acsl2 acsl2,LOC107710839,LOC107665192,LOC107553163,LOC107716609,LOC107678403,LOC108426687 coding upstream 308668 21697808 ~ 21729217 (-)
prkg1l LOC107553164,LOC107710842,LOC107678373,LOC107562631,LOC107665193,LOC107716608,LOC107728357 coding upstream 341514 21730654 ~ 21751680 (-)
G65871 NA non-coding downstream 13100 21373243 ~ 21374591 (-)
G65897 entpd4,LOC107678413,LOC107747713,LOC107698120,LOC107553130 non-coding downstream 31975 21353762 ~ 21355716 (-)
G65896 entpd4,LOC107553130,LOC107698120,LOC107710847 non-coding downstream 34739 21349450 ~ 21352952 (-)
LOC122350047 NA non-coding downstream 140504 21246085 ~ 21247187 (-)
G65835 LOC107721099,LOC107747802,LOC107556211,LOC107698076,LOC107678378,LOC107563165 non-coding downstream 285139 21100084 ~ 21102552 (-)
G66046 NA non-coding upstream 181977 21571117 ~ 21644683 (-)
G66047 NA non-coding upstream 214535 21603675 ~ 21638348 (-)
G66071 NA non-coding upstream 362628 21751768 ~ 21753615 (-)
G66115 NA non-coding upstream 621503 22010643 ~ 22013678 (-)
LOC122350974 NA non-coding upstream 684547 22073687 ~ 22074471 (-)
gna14a gna14a,gna14,LOC107698092,LOC107678467,LOC107556222,LOC107721075,LOC108426707,LOC108265545 other downstream 361860 21014993 ~ 21025831 (-)
LOC122350336 LOC107714596,LOC107556216,LOC107698089 other downstream 664536 20718940 ~ 20723155 (-)
LOC122350560 ppia,LOC107566959,LOC107756826,LOC107722982,LOC107591936,LOC107691583 other downstream 966395 20415065 ~ 20421296 (-)
zgc:154046 adamts13,zgc:154046,LOC107702807,LOC107548275,LOC107722731,LOC107702859,LOC108426726,LOC108265337,LOC107740996,LOC107565124,LOC107691587 other downstream 1253346 20118007 ~ 20134345 (-)
si:ch211-218o21.4 si:ch211-218o21.4,LOC107550930,LOC107702847,LOC107727198,LOC107747209,LOC107683911 other downstream 1954400 19428738 ~ 19433291 (-)
G66086 si:dkey-32e23.4,LOC107678420,LOC107562650,LOC107728358,LOC107710834 other upstream 382328 21771468 ~ 21776620 (-)
G66090 NA other upstream 395564 21784704 ~ 22254189 (-)
G66119 gfpt1,LOC107710818,LOC107752562,LOC107678434,LOC102792631 other upstream 624833 22013973 ~ 22025791 (-)
G66116 gfpt1,LOC107710818,LOC107678434,LOC107562636,LOC107553119,LOC107752562,LOC108426669,LOC103362312,LOC101170101 other upstream 639592 22028732 ~ 22031993 (-)
LOC122350973 dmtn,LOC107586118,LOC107687659,LOC107720576,LOC107553712,LOC107705088,LOC107571963,LOC107702870,LOC107723027 other upstream 670875 22060015 ~ 22068757 (-)

Expression


Co-expression Network