gkap1 (gkap1,LOC107664507,LOC107678454,LOC107553117)


Basic Information

Item Value
gene id gkap1
gene name gkap1,LOC107664507,LOC107678454,LOC107553117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22385203 ~ 22394002 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246361.1
CCTGGAGTGAACAACGAGAAACGACGACATTTCCCCCCCAGTAACACGACGACGCTTTTGTGTCCGTTCAGGCCGCCATACTCTCGCCTCTGTTCGCAGTTTGTACTTGCACGAAGCTGAGGATACCGACAGTCCTAAACAGGTTCAGGATGGCATCGGCGGTGATCTCGGTACCCACCACGGCGTCCCGCTTCGCTCTGCTGCAGGTCGACTCGGATTCAGAGTCCGGTGGTTCGGATGCAGGGAAACCGAAGACGGGTCGCGGAGCAAGGAAACCCGGCTCGGGGAAATCTCCCAGCGGGAAGACCAACCAGaataatgacaaaaagaaagagaagagaagaagaaagaaggagCAGCAGCAAAGTGAAGCCAATGAGCTCAGAAGTCTTGCTTTCAAGAAGATCCCTCAGAGGTCAGCGGCTCCTCCCTCCACGCTCACGCTGCAGGATCTAGCCAATGACCTGATGAACCCGGCCGCCGTCCAGCACGGCTCCAAGCCTCAGGAGAGCTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGCGACTTGTATGAGGCGGATCTGGAGAAGGCCCTGATGCTCAGCAAACTGGAATTTGAGCAACATAAAAAGGATGCTGAAAGAACAGAGACGGCGTCACCAAAAGCAAAAGCAGGAGGAAAGAAGGACAGGAAGAAGAATCAGCAGGGGAAGGACAAACGAGTGACGGTGTCTCTTAAAGACTTCCAGCAGGAGGCTGGCGTGGATCAGCTCAACAAGAAGCCTGACAGAGAGGCCGTGAACCCGGCGTTGCGCGACGACAAGTTTTTCAACCAGCTGGAGGACGACGTGAGCCGGATCGTCCAGCGGGACAAGCGCAGAGAGCAGTACAGCACCAGCGCGGGTCACGAGGTCAACACCTCCTCAGAGCAGGAGCAGGACGTGAGAACCGAGCAGTTAAAATACGAACTGGAAAAGAAAGACCAGGAAATTTTGAAGCTGAAAAAGACCATTTCACAATGGGAGGAGAGATATAAGGAAGTGAAGGCCAGAAACGCTCAGCTGCTGAAAATGCTTCAACAGGGAGAGATGAAGGACAAAGCTGAAATACTGCTGCAGGTGGAGGAGCTCCAGAACATTAAAGAAGAGCTGTCCTCacagGTGACACAATTACACACCGCTCTGGAGCAAGAGAGGTCAAAGGTGAAGGGCTTGCAGTCAGAGCAACCGAAGCATCAGGGGAACCGGAAGGGTAAAAAGGCATCGGATGGGGACTTATGAAGATGCGTGCTAGAGGACAGCTTGAATGTTTCATCTCCTTTGTCAAGCTGCTAATGTCTTTTAGTATctgcacagaacacacacacacacactcctgcttATTACTGCATCGTTTTCTTCGGCCGACCACAGCGAACAGAAGTTCTGCTTCTACTCTGTAGAATTAATCCACTTCTGTTCTCTGCGCTATGAATCAAAGGCGTCACCATCCTGAGTTCTTTTCAATAAAGATGCTGATCTACTTTTTCAAAGTGGTCGTTTACGCTTGAAa
>XM_043246362.1
GTTGCTTTTAACGGCACCCTCGCtcgagagagagcgcgagacgCGCTGACGAGCGTAAACCCCGTCCAGGACAAAGACGGCGACGGCGCGCGCTGCTTACTTGTGTTCAGCGCTGGCGAGCTAAAAAAAGTCTAAGCTAGCGACATTTTGGGTATCAAATGATGCGATGATTGAAACCGAAGTTCAGGATGGCATCGGCGGTGATCTCGGTACCCACCACGGCGTCCCGCTTCGCTCTGCTGCAGGTCGACTCGGATTCAGAGTCCGGTGGTTCGGATGCAGGGAAACCGAAGACGGGTCGCGGAGCAAGGAAACCCGGCTCGGGGAAATCTCCCAGCGGGAAGACCAACCAGaataatgacaaaaagaaagagaagagaagaagaaagaaggagCAGCAGCAAAGTGAAGCCAATGAGCTCAGAAGTCTTGCTTTCAAGAAGATCCCTCAGAGGTCAGCGGCTCCTCCCTCCACGCTCACGCTGCAGGATCTAGCCAATGACCTGATGAACCCGGCCGCCGTCCAGCACGGCTCCAAGCCTCAGGAGAGCTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGCGACTTGTATGAGGCGGATCTGGAGAAGGCCCTGATGCTCAGCAAACTGGAATTTGAGCAACATAAAAAGGATGCTGAAAGAACAGAGACGGCGTCACCAAAAGCAAAAGCAGGAGGAAAGAAGGACAGGAAGAAGAATCAGCAGGGGAAGGACAAACGAGTGACGGTGTCTCTTAAAGACTTCCAGCAGGAGGCTGGCGTGGATCAGCTCAACAAGAAGCCTGACAGAGAGGCCGTGAACCCGGCGTTGCGCGACGACAAGTTTTTCAACCAGCTGGAGGACGACGTGAGCCGGATCGTCCAGCGGGACAAGCGCAGAGAGCAGTACAGCACCAGCGCGGGTCACGAGGTCAACACCTCCTCAGAGCAGGAGCAGGACGTGAGAACCGAGCAGTTAAAATACGAACTGGAAAAGAAAGACCAGGAAATTTTGAAGCTGAAAAAGACCATTTCACAATGGGAGGAGAGATATAAGGAAGTGAAGGCCAGAAACGCTCAGCTGCTGAAAATGCTTCAACAGGGAGAGATGAAGGACAAAGCTGAAATACTGCTGCAGGTGGAGGAGCTCCAGAACATTAAAGAAGAGCTGTCCTCacagGTGACACAATTACACACCGCTCTGGAGCAAGAGAGGTCAAAGGTGAAGGGCTTGCAGTCAGAGCAACCGAAGCATCAGGGGAACCGGAAGGGTAAAAAGGCATCGGATGGGGACTTATGAAGATGCGTGCTAGAGGACAGCTTGAATGTTTCATCTCCTTTGTCAAGCTGCTAATGTCTTTTAGTATctgcacagaacacacacacacacactcctgcttATTACTGCATCGTTTTCTTCGGCCGACCACAGCGAACAGAAGTTCTGCTTCTACTCTGTAGAATTAATCCACTTCTGTTCTCTGCGCTATGAATCAAAGGCGTCACCATCCTGAGTTCTTTTCAATAAAGATGCTGATCTACTTTTTCAAAGTGGTCGTTTACGCTTGAAa
>XM_043246363.1
GTTGCTTTTAACGGCACCCTCGCtcgagagagagcgcgagacgCGCTGACGAGCGTAAACCCCGTCCAGGACAAAGACGGCGACGGCGCGCGCTGCTTACTTGTGTTCAGCGCTGGCGAGCTAAAAAAAGTCTAAGCTAGCGACATTTTGGGTATCAAATGATGCGATGATTGAAACCGAAGTATGTCTATGCGGTGTTTAAAGCCTGACGTTCAGGATGGCATCGGCGGTGATCTCGGTACCCACCACGGCGTCCCGCTTCGCTCTGCTGCAGGTCGACTCGGATTCAGAGTCCGGTGGTTCGGATGCAGGGAAACCGAAGACGGGTCGCGGAGCAAGGAAACCCGGCTCGGGGAAATCTCCCAGCGGGAAGACCAACCAGaataatgacaaaaagaaagagaagagaagaagaaagaaggagCAGCAGCAAAGTGAAGCCAATGAGCTCAGAAGTCTTGCTTTCAAGAAGATCCCTCAGAGGTCAGCGGCTCCTCCCTCCACGCTCACGCTGCAGGATCTAGCCAATGACCTGATGAACCCGGCCGCCGTCCAGCACGGCTCCAAGCCTCAGGAGAGCTGGCAGGAGTGGAAGCAGAGAGATGAACAGCTGACCAGCGACTTGTATGAGGCGGATCTGGAGAAGGCCCTGATGCTCAGCAAACTGGAATTTGAGCAACATAAAAAGGATGCTGAAAGAACAGAGACGGCGTCACCAAAAGCAAAAGCAGGAGGAAAGAAGGACAGGAAGAAGAATCAGCAGGGGAAGGACAAACGAGTGACGGTGTCTCTTAAAGACTTCCAGCAGGAGGCTGGCGTGGATCAGCTCAACAAGAAGCCTGACAGAGAGGCCGTGAACCCGGCGTTGCGCGACGACAAGTTTTTCAACCAGCTGGAGGACGACGTGAGCCGGATCGTCCAGCGGGACAAGCGCAGAGAGCAGTACAGCACCAGCGCGGGTCACGAGGTCAACACCTCCTCAGAGCAGGAGCAGGACGTGAGAACCGAGCAGTTAAAATACGAACTGGAAAAGAAAGACCAGGAAATTTTGAAGCTGAAAAAGACCATTTCACAATGGGAGGAGAGATATAAGGAAGTGAAGGCCAGAAACGCTCAGCTGCTGAAAATGCTTCAACAGGGAGAGATGAAGGACAAAGCTGAAATACTGCTGCAGGTGGAGGAGCTCCAGAACATTAAAGAAGAGCTGTCCTCacagGTGACACAATTACACACCGCTCTGGAGCAAGAGAGGTCAAAGGTGAAGGGCTTGCAGTCAGAGCAACCGAAGCATCAGGGGAACCGGAAGGGTAAAAAGGCATCGGATGGGGACTTATGAAGATGCGTGCTAGAGGACAGCTTGAATGTTTCATCTCCTTTGTCAAGCTGCTAATGTCTTTTAGTATctgcacagaacacacacacacacactcctgcttATTACTGCATCGTTTTCTTCGGCCGACCACAGCGAACAGAAGTTCTGCTTCTACTCTGTAGAATTAATCCACTTCTGTTCTCTGCGCTATGAATCAAAGGCGTCACCATCCTGAGTTCTTTTCAATAAAGATGCTGATCTACTTTTTCAAAGTGGTCGTTTACGCTTGAAa

Function

symbol description
gkap1 Predicted to be involved in signal transduction. Predicted to be located in Golgi apparatus. Orthologous to human GKAP1 (G kinase anchoring protein 1).

NR:

description
G kinase-anchoring protein 1 isoform X1

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246361.1 False 1539 mRNA 0.52 12 22385203 22394002
XM_043246362.1 False 1578 mRNA 0.52 12 22385360 22394002
XM_043246363.1 True 1607 mRNA 0.52 12 22385360 22394002

Neighbor

gene id symbol gene type direction distance location
c8h9orf64 zgc:136564,cunh9orf64,c5h9orf64,LOC107757431,LOC107664574,LOC107553132 coding upstream 2459 22379403 ~ 22382744 (+)
hnrnpk hnrnpk,LOC107757432,LOC107752553,LOC107678442 coding upstream 6757 22370722 ~ 22378446 (+)
agtpbp1 agtpbp1,LOC107757430,LOC107752548,LOC107562637,LOC107678371 coding upstream 66389 22290751 ~ 22318814 (+)
LOC122350739 antxrl,antxr1a,LOC107661337,LOC107710819,LOC108265351,LOC107562635 coding upstream 378047 21965074 ~ 22007156 (+)
LOC122351030 NA coding upstream 425304 21950079 ~ 21959899 (+)
frmd3 frmd3,LOC107678471 coding downstream 1145 22395147 ~ 22438371 (+)
opn7d opn7d,LOC107570009,LOC107664480,LOC107755598,LOC107678369,LOC108426644,LOC107752573 coding downstream 65935 22459937 ~ 22493964 (+)
LOC122349889 LOC107748971,LOC107710781,LOC107678464,LOC107698851,LOC107595755 coding downstream 147796 22541798 ~ 22549058 (+)
LOC122351043 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107575601,LOC107678397,LOC107752574 coding downstream 160865 22554867 ~ 22558195 (+)
sypb sypb,LOC107553146,LOC107664463,LOC107755600,LOC107678440,LOC108426646 coding downstream 253846 22647848 ~ 22659247 (+)
G66024 NA non-coding upstream 96356 22288308 ~ 22288847 (+)
G66022 NA non-coding upstream 99771 22283734 ~ 22285432 (+)
G65998 NA non-coding upstream 141910 22010649 ~ 22243293 (+)
G66183 NA non-coding downstream 118177 22512179 ~ 22513245 (+)
G66189 NA non-coding downstream 136251 22530253 ~ 22531750 (+)
G66261 NA non-coding downstream 405637 22799639 ~ 22800154 (+)
LOC122350789 NA non-coding downstream 515645 22909647 ~ 22911382 (+)
LOC122350915 NA non-coding downstream 836041 23230043 ~ 23231024 (+)
G66011 naa35,LOC107752550,LOC107757435 other upstream 264407 22119913 ~ 22120796 (+)
G66010 naa35,LOC107757435,LOC107752550 other upstream 267369 22116283 ~ 22117834 (+)
LOC122350768 LOC107710831,LOC107553156,LOC107562655,LOC107678394 other upstream 420640 21963465 ~ 21964563 (+)
G65995 NA other upstream 423358 21949888 ~ 21961845 (+)
G65992 LOC107553157,LOC107661339 other upstream 444279 21939146 ~ 21940924 (+)
LOC122350000 ddx51 other downstream 138466 22532468 ~ 22540233 (+)
mfsd2al2 NA other downstream 321377 22715379 ~ 22723908 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other downstream 330580 22724582 ~ 22727444 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other downstream 505434 22899436 ~ 22925768 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other downstream 579993 22973995 ~ 22987162 (+)

Expression


Co-expression Network