acer1 (acer1,LOC107731201,LOC107676796,LOC107585930,LOC107550428)


Basic Information

Item Value
gene id acer1
gene name acer1,LOC107731201,LOC107676796,LOC107585930,LOC107550428
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9970128 ~ 9976762 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246366.1
AAATGGTCGCCCGGTGAGGTGCAGGTAAACTTAACCTCAGCTCGTTGATCTTGTGCTGCAGCTCGCGCTGGAGGCGGGCGCGTGCCGGTCGTTCTCTGGTAAAACGGTACGTTTCAGGTCTGTCCGCATAACGAGCTGACAGCTTCACTATACATTGGCACAATGAGGAATGCTACCGTTCGCTGGGTTTCACCTGAACTCTCCAGGTGATGTCACAACGCGAGACCCGAGTAACAGGATCGGGGACATTTCTCCCCTACTTAAACCTGACACATGGAGCGCGCCGCTACGGATGCGCTTTGGAGAGGGATCCCGTCATTCCCATCCTTTGACAAAATGGCAGGTGTGTTTGCCTACGAGAGCTCTGAAGTGGACTGGTGTGAGGACAACTATAAACATTCAGAGAATGTTGTGGAATATTTCAACACGATGAGCAGTTTTATATTCTTTGTGATCTCACCCATAATGCTTTACTTGCTACACCCATATGCCAAGGAAAGGAACCTGGCTGTGCACCTGGTCTGGATCATGATGGTCTTTGTAGGTATCTTCTCCATGTATTTTCACATGACTCTGAGCTTTATGGGCCAGATGCTGGATGAGCTGTCAATCCTGTGGGTCTTGGCCCTTGGTTACTCCCTGTGGTTTCCGCGGAGACACTTCCCTTCTTTTATTAAGGACAGgaAATCCTTCTGTCATATGGTCCTGATCATCACTGTCATAAGCACTCTGTCCTCTTTTGTCAAACCTACAGCCAATGCCTACGCCCTCAACTGCTTCGCCATCCATATCCTCTACTCTCTGTTTGTGGAATTAAGGAGTTGCACAGATGAGAGAGTGCTGCGTCTGGCCTGGGCGTCCATTGGCCTGTGGGTTCTGGCTATCTCCTGCTGGATTAGCGATCGCTTTGGCTGCAGCTTCTGGCAGAAACTGGACTTCTGTTATCTGCATGGTATCTGGCACATTCTGATTGTGGTGGCCACAGCTTATGCTAGTACTTTGGTCGCTTACCTGGACGCTAGTTTGGAGATCCCTTATTCCCTACCTGACCTGCAGTACTGGCCACGGAATAACTGGTCCATTGGACTTCCTTACATAGTCCTCAAGGGCACCACAAAGACACAGAAAAGATGTTAACAGGCATGTTTAAAGCTTGGAGTAACGCTGATTCAGGACCAGcctttacatttccaaaatggTGAATACATTTATATGGGCAGGAAGGAGCTGATCCTAGATCAGACACTGTACGTTATGTGAACTCTGAAGAGAAACTTATATGAAACAAATGCTGTGCTGAGTTGTTGCAGTTTCTGGAGCTTTCTTCATATTTCTCACAGAAACTGAAGTATGAGTGTGAATGTTTCTATGCAAGTGACCGTTCATATTCTCATCTTTACAAACAACATGGTGTTGTTATGTGAAAACAGATATTTGCACTGTTGTGACTAGATTGAATGTTTGTACAAAGCATTCTGAATTTTACTTGATTTTCTTGTTAACTGAGAAAATTGTTATAAGCAACCGTTTGATTCATGGGTGAAACTTGAATACtaattgtaaaagaaaatatcaatGCTCGATTCATAGTCTGTTCAGAGGAAGTCATGCCGCCTGTCTGATGTGAGATGTCACTTTCTGAAATGATTTTCCCACAGCAAATGGTGCAGACGTTTGGGGATTATGTATCATTTTGATGtggcatttttgttattttactgtgtttcgttaaaaaactattttaacttCTAACTTCCACCTCAGTGTATGAAATTGTGAATATTGATGATGGCGTACTGTTCAATGACAACACTGTGGAAAAGACTTATGTGacataaaactaattatttgtggcttatttttatataaattatgattGCTGGGA

Function

symbol description
acer1 Predicted to enable dihydroceramidase activity. Predicted to be involved in ceramide catabolic process and sphingosine biosynthetic process. Predicted to act upstream of or within ceramide metabolic process. Predicted to be located in endoplasmic reticulum. Is expressed in alar plate midbrain region; basal plate midbrain region; central nervous system; optic tectum; and tegmentum. Orthologous to human ACER1 (alkaline ceramidase 1).

NR:

description
alkaline ceramidase 1

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246366.1 True 1885 mRNA 0.44 7 9970128 9976762

Neighbor

gene id symbol gene type direction distance location
rfx2 rfx2,LOC107676724 coding downstream 37117 9900496 ~ 9933011 (-)
lpxn LOC107676702,LOC107717550,LOC107585869,LOC107695247,LOC107750911 coding downstream 113522 9852232 ~ 9856606 (-)
trabd2b si:ch211-120j21.1,LOC107717551,LOC107585868,LOC107676673,LOC107695245,LOC107548850,LOC108442342 coding downstream 132678 9786252 ~ 9837450 (-)
edem3 LOC107717559,LOC107585860,LOC107750782,LOC107548759,LOC107700180 coding downstream 352002 9606505 ~ 9618126 (-)
zgc:92140 zgc:92140,LOC107676598,LOC107585858,LOC107717558,LOC107700167,LOC107548740,LOC107750760 coding downstream 364162 9581828 ~ 9605966 (-)
myo1f myo1f,LOC107750961,LOC107585872,LOC107548903,LOC107731286,LOC107695252,LOC108413823 coding upstream 2874 9979636 ~ 9995108 (-)
dohh dohh,LOC107745802,LOC107548993,LOC107585881,LOC107695215 coding upstream 277128 10253890 ~ 10256950 (-)
LOC122349939 LOC107731225,LOC107701761,LOC107585934,LOC107745801,LOC107550447,LOC100005423 coding upstream 280383 10257145 ~ 10259192 (-)
haus5 LOC107731222,LOC107585885,LOC107745798,LOC107695262 coding upstream 288079 10264841 ~ 10271997 (-)
si:dkeyp-82a1.6 LOC107550035 coding upstream 303541 10280303 ~ 10284362 (-)
G62576 NA non-coding downstream 237974 9731906 ~ 9732154 (-)
G62568 NA non-coding downstream 259132 9710646 ~ 9710996 (-)
G62567 NA non-coding downstream 260907 9708973 ~ 9709221 (-)
G62565 NA non-coding downstream 266530 9703376 ~ 9703598 (-)
G62564 NA non-coding downstream 266937 9702959 ~ 9703191 (-)
G62670 NA non-coding upstream 66426 10043188 ~ 10043398 (-)
G62749 mob3a,LOC107695254,LOC107585875,LOC104921817,LOC103368804,LOC107731185,LOC103137270 non-coding upstream 78289 10055051 ~ 10057928 (-)
G62768 NA non-coding upstream 100655 10077417 ~ 10077652 (-)
LOC122350767 NA non-coding upstream 151123 10127885 ~ 10150991 (-)
G62788 NA non-coding upstream 175477 10152239 ~ 10152905 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 643 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 261507 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 707302 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 1312842 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 1320145 8647270 ~ 8649983 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 18785 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 268434 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 412421 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 464002 10440764 ~ 10480051 (-)
trnar-ccg_26 NA other upstream 563457 10540219 ~ 10540291 (-)

Expression


Co-expression Network