gcn1 (gcn1,LOC107552181)


Basic Information

Item Value
gene id gcn1
gene name gcn1,LOC107552181
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2465043 ~ 2508114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246386.1
GCAGGAGCACGTGGCCGAGGACGGTAACGACTCCGGAAGTGACGACTTAAAGCCTTTCCAGATCGAGGCCGGCAAGATGGCGGCGGACACGCAGGGACAGGTTTCAGACACACTGAAGAGATTCGCTGTGAAAGTCACATCATCCAGCGTTAAAGAGCGCAAAGAAATTCTCGAGGAGTTGAAGGAGTGCGTGAAAGGAAAGGATCTTCCTGAGCCGGCCATTAAAGGACTGTGTAAGCTCTTCTATCTCACTCTGCACAGATACAGGGATGCTGCTTCTCGGCGAGCGTTGCTCTCGGTCATCGAGGTGCTCATCCAGTCACAGCCCGATGCTATTGCGACCAACCTCCCTCCCGGTCTGCTGAGCTGTGGGGTGGTCAGCAAGGGCGTGATGCCCGGGAAGAGCACGGCTTCGGGAGCCTGCTGCGCCCTGCCCTGGACCTGTTTAATCGTACGGACCGTCTTCCCCTCGGCAGACAAGAGAGAAGGAGCCAAGTGGAAGAAGCTGGTTGAGGTTCAGAGTTTGCTGCTGGCGGAGGCAGCGGGCGGAGCCTCGGGGAACGCCCTCAAGTCGATCAGCAAACGCTTCAACAAGCTGTGGAAGGAGAACCCGGGTCTGGTGGATCAGTACATGAGCActctgctgtgtttggatcAGAGCTGTGTGTCTGTGCCGCTGCTGGGACTGTGTGTGGATTTCTGCACTGCGCAGAAAGATATCGCCACTATCAACAAACACAAGGTGGCTCTCTTGGACCTGTACATGAAGACGGTCCTCATGAGTAAGACCAGACCGCATCAGCACATCCTGGAGAGGAGCGGCTCGATTGTTCGACACATGTCTCACGCAGACTTCAAGGAGCAGCTGCTGCCCACCTTACAGAAAGCTCTGCTGCGCAGCCCGGAGAACTCCATGCAGACGATCTCCTACATGCTGGCGTCTCTCACTCTCGATCTGAGTCAGTACGCGCTGGACATCGGGAAGGGAATCTCCAGTCATCTGAAGGCCAATAACCCAGAGCTGATGGATCAGGCGGTGTCAGCCCTCCAGAATCTGGCCCAGCAGTGCAGTGACCCCAGCGCCGTCCAGGACCTCGTCAAACACCTCTTTGGCATCCTCGGAGGCTCAGAGGGGAAGCTCACGGTGGTGGCGCAGAAGATGAGCGTTCTGTCAGGAATCAGAAGTTGCAGTCATCATGCCGTCTCGGGCTCTTCCTCTCAGTCTCTGAGCTCCAGCGTGGCTGTGATGTTCATTCCATACCTGCAGCAGGAAGTCCATGAGGGGACGCTGGTGCACGCGGTATCTGTTTTATCTCAGTGGACATGCCGTTTGACGGTGAACGTACCTTCAGAGTTGAGAGAGTGGTTTAAAAAAGCCTTCACCCTCAAGACGTCCACCTCCTCTGTGCGCCACGCGTATCTCCAGACACTGATCGGGGCTTTCAAAGGCGACGCTCTCAGTCAGGCCATGGACTTCCTGCCTCTCCTCATCCAGACTGTAGAGAAAGCCGCTGCTCAGAATACCCAGCATTCTCTGCTGTCCGAAGGCGTGGCTGCGTCTGTGCTGCTCTGTCGGCTGTCTGTGCTCGACTCCGTGCCCGAAGCGAAGCTGGCGTCCTTCTGGAGCCTGATCCTGGATGAAAAGAAGCCTCTGTTCACTACCGAGAAGTTCCTCTCTCAGGCCAGCGAAGAAGCTCTGTGCACCATCCTGCTGCTGTGTGAAAGACTGTTCCTGGATCAGCCGCAAAGACTTAACAACAGCAAGTCTCAGATGTACCATCAGGCCACGGCGATGGCGCTGCTCTCCCGTCAGTGGCGCGTGCGCAAGCGTGCTCAGCAGACCGTGAAGAAACTCCTGTCCTCGCTGGGCGGCTCCAGCCTGGCCTACAGCCTTCTGGGAGAACTGCGCGTCGTCATCAACAAACACAAGATTCTGCCGTCAGAGGTTGTTTACATGGAGACGGGCGAGCTCACGGAGATCGGACGCTCTTACGTCGCCCCGAGGATCCTGCTGGACGCTCTGAGCGTGATCTGCTCGGTGGCGGCTCTGTGGAACGACGTCGCGGAGACTGAGAGGCTGGCCCTGGATATTCTCATCGTAACCCACCATCCGTCCATCGtggCCGTCAGGTCCGAGATGTGGCCTTCTCTGCTGTCCGTCATGAAGCTGGACGCTGTTGAATTCATCGATAAACACCTGGAGACTATTCTACCTCGCCTGCTAGAAGCCAACACAGACAATCAGGCTGTTCAGAATGCTGTCGGTTCTCTGTCGCTTCTGTCTCCCACCAAACTACTGCCGCGTGTCATGGACCATGTGACCCAGCGCTTTTCCAACCCGGCGCTGAGGCAGGTGATGCGCCAGGAGTACGCCGTCATGCAGACGCCGGAGGGAGAACTTTACGACAAGAGCATCATTATGAGCGCTCAGCAGGAGAGCACAAAGAAAGGCAACATGAAAAGAGAGAACAAGGCGTATTCCTTCAAAGAGCAGATCATTGAACTGGAGCTTCAAGAGgaAATCAAGAAGAAGAAAGGCATCAAAGAGGAGATCCAGCTGACCAGCAAGCAGAAGGAGATGATGCAGAACCAGCTGGAGAAAGAGTCGGGCATCCGCAAGCGCTTGCAGGAGCTGGACGTGGAGCTGCAGTGTGTGGTCGGTCTGCTGGAGGCGACTCTGGCCCGTCGTCCTCCTATGATCTGGATGCATCTTCCTGGAGTCCTTCAGGTTCTTCTGCCCCTTTTTCAGTCTCCTCTCGCTGCTCCCCGCGTCAGACAGGTCTTCCTGCACATCGGTGTCACCCTCATGCCTAAAGAACTGCACTACCTGGCGGTTCTGGTGGGTCACGTGACCTTGCGTCAGCTGAAGCCAGAGTGTGATTTGGATCCTGCCTGGGCTCAAGAAGATCTGAACACAGCAACGCAGCGAACCATCTCCCtgctgcacacaaacacagcactTCAGAGAGAAGGATCAGGTGCGTTTGTCCTGTCGGCGCCGGCGTTCTCCTTCTGTTTCCCGCTGCTGCAGGCCGTGTTGAGTCAGAGCAGCGGGTCCTCGGAGGAGACGGAGCTCGTGATGACCCGGGCACTGCAGGTCAtcaacacacacgcacagctACGGGCCAAATTCAACGACAGCGACACACTCGTAGACGAGAACGGCCCAGAGCTGCTGCCCAGAGTCAGTATGCTGCTGCTCTTGACCAAAGTGATCGGAACATCCACCCCTCGCCTTCAggtgCTGGCATCAGGCTGTCTGACGGCTCTATGTGGCAGCTCTGGAGGACAGGAAGGATGTGCGCTCGCCGAGCAGCCTGAGATTGATGTTCTGCTGGAGTCTTTACTGTCTCCGTGCTTCTCTGTCAGAGACGCTTCGCTCAGGGGTCTGCTGGAGATGGAGTTGGCGTTGCCCACCGACGGCGCTGACGCCAGCGGCCTGAAGATGCTGAGGAGACTGTGGGTGGCCAAATTTGATGTGGAGGAGGAGGGCAGAGCTCTGGCGGAGAAACTCTGGCAGGCTCTGTGTCTGGATCTGGTCCCCGAGCTGTGTTCTCTCCTGATTGAGGACGTGATCCATCACGAGGAGGCGGTGCGTTCGGCCGGGGCCGAGGCTCTGTCCAGCGCCGTCAGTCAGTACCGGGAGCAGTCGGCCACCGTCCTCGCCCAGCTCACCGAGCTCTATCACCAGAAGCTCTACAGACCTCCTCCGGTTCTGGACACTCTGGGACGCGTCATTTCTGAAGCTCCTCCTGACCAATGGGAGGCCAGGTGCGGCATCGCTCTGGCGCTCAACAAGCTGGCCGAGTTCCTGGATGAGAGTCAGGTGACGCCCCTCTTCCTGTTCTTCGTGCCGGACTCTCTGAACGACAGACACGTGGAGGTGCGGCGCTGCATGCTGGACGCGGCGCTGTCCGCCCTCAACACACACGGGAAGGATAACGTGAACTCTCTGCTGCCCGTGTTTGAGGAGTTTCTGAAGAACGCGCCGCAGGACGCCAGCTATGACTCGGTGCGGCAGAGCGTGGTCATCCTCATGGGCTCGCTGGCCAAGCATCTGGACAAGAGTGACCCTAAAGTCAAACCTATCGTGGCCAAGCTGATCACGGCCCTCTCTACTCCCTCACAGCAGGTCCAGGAGTCGGTGGCCAGCTGTCTTCCTCCTCTGGTCCCTGCGATAAAGGAGGACGCCGGTGGGATGGTGCGCAAGCTTCTTCAGCTCCTGCTGGAGAGCGACAAATACGCCGAGAGGAAGGGAGCCGCGTACGGTCTGGCCGGGCTGGTCAAAGGTCTGGGCATCCTGTCTCTCAAACAGCAGGAGATCATGACCACTCTGACAGACGCCATCCAGGACAAGAAGAACTCCAGACGCAGAGAAGGGGCTCTGTTTGCGTTTGAGATGTTGTGTAACATGCTGGGGAAGCTGTTTGAACCGTACGTGGTTCACGTTCTCCCTCACCTGCTGCTCTGTTTCGGTGATGGGAACCAGTACGTCAGAGAGGCGGCGGATGACTGTGCTAAAGCGGTGATGAGGAATCTGAGCGCTCACGGCGTCAAGCTGGTGCTACCGTCTCTGCTGGTGGCTCTGGAGGAGGAGTCCTGGAGAACCAAAGCAGGGTCGGTGGAGTTGTTGGGTGCGATGGCGTTCTGCGCTCCCAAGCAGCTGTCCTCGTGTCTGCCGAACATCGTTCCCAAACTGACTGAGGTTTTGACGGACTCTCACGTGAAGGTGCAGAAGGCCGGTCAGCAAGCGCTCCGTCAGATCGGCTCCGTCATCCGCAACCCTGAGATCCTGGCAATCACCCCCATCCTGCTGGACGCTTTGACCGACCCGTCTCATAAGACCCAGCACTGCCTGCAAACGCTGCTGGACACCAAGTTTGTGCACTTCATCGACGCTCCGTCTCTGGCTCTGATCATGCCCATCGTCCAGAGAGCGTTTCAGGACCGCTCCACCGACACGCGCAAGATGGCGGCGCAGATCATCGGGAACATGTACTCGCTCACTGACCAGAAGGACCTGTCTCCGTATCTGCCCAGCGTGATTCCAGGACTCAAAGCGTCTCTGTTGGACCCCGTGCCCGAGGTGCGGACCGTGTCTGCGAAGGCTCTGGGTGCTATGGTGAAGGGAATGGGCGAGTCCTGCTTCGACGATCTGCTGCCGTGGCTCATGGAGACGCTGGCGTCTGAACAGAGCTCTGTGGATCGATCCGGTGCCGCTCAAGGTTTGGCTGAAGTTATGGCCGCGCTAGGTGTGGAGAAGCTGGATAAACTGATGCCAGACGTGGTTCAGACGGCCAGTAAAGTGGACATCGCCTCTCACGTCAGAGACGGATACATCATGATGTTCATCTATCTCCCTCTGACCTTTGGGGATAAATTCACTCCGTATGTGGGTCCCATAATTCCCTGCATCCTCAAGgctcTGGCCGATGAGAACGAATATGTGCGAGACACGGCCCTGCGCGCCGGCCAACGCATCATCAGCATGTACGCCGAGACTGCCATCGCTCTGCTTCTACCAGAGCTGGAGCAGGGTCTGTTTGACGACCTCTGGAGGATCAGATTCAGCTCGGTGCAGTTGCTAGGCGACCTGCTGTTCCACATCTCCGGGGTAACGGGAAAGATGACAACAGAGACGGCATCAGAGGATGACAATTTCGGCACGGCCCAGTCGAATAAGGCTATTATTGGAGCGCTGGGCGCGGAGAGACGCAACCGCGTGCTTTCTGGGCTCTACATGGGCCGCTCAGACACGCAGCTGGTGGTCAGACAGGCGTCTCTCCACGTCTGGAAGATCGTGGTGTCAAACACTCCACGAACACTGCGCGAAATCCTGCCCACCCTCTTCACTCTCCTGCTGGGCTTCCTGGCCTCCACCTGCCCAGACAAGAGAACGATCGCTGCTCGTACTTTGGGCGACCTGGTGAAGAAACTGGGTGAAAAGATCCTGCCTGAAATCATTCCTATCCTGGAGGAGGGTCTGCGCTCGGACAAGAGCGACGAGAGGCAGGGTGTGTGCATCGGCCTCAGCGAGATCATGAAGTCCACCAGCAAAGACGCAGTTCTGGTGTTCTCTGAGTCTCTGGTTCCCACCGTGCGTAAGGCCCTGTGTGATCCTCTGGAGGAGGTTCGTGAAGCGGCTGCCAAAACCTTCGAGCAGCTCCACACCACCATCGGTCACCAGGCCCTTGACGACATCCTGCCCATGCTGCTCAAGCAACTGGAGGACGAGGAGACGTCAGAGTTTGCGTTGGATGGATTGAAGCAGGTCATGGCTGTGAAGAGTCGATCTGTCCTGCCTTACCTCGTGCCTAAGCTGACGGCTCCTCCTGTAAACACGCGAGTCCTCGCCTTCCTGTCTGCGGTGGCAGGAGACGCTCTGACGAGACACCTCGGGGTGATTCTGCCCGCGCTGCTCTCCTCTCTCAAAGACAAGCTGGGCTCAGAGGAGTGCCTTCAGGAGCTGAGCAACTGTCAGGCGGTGGTCCTCTCGGTGGAGGATGAAGTCGGTCAGAGAATCATCATCGAGGATCTGCTGGAGGCCACTCGAGGAGCAGACGCTGGTCTGAGGCAGGCGTCCATCACCATCCTCAACGGGTACTTCTCTCGAACGCGCCTGGACTACAGCGCTCACACGCGCATGCTGCTGTCCGGTCTCATGCGGCTCATGAACGACCCCAACCCCGAGGTGCTCAGCCAGAGCTGGGACACCATCAACTCCATCACAAAAAAACTGGATGCTGGCAGTCAGCTGTCCTTGATTGATGACCTGCACAGGGACATCCGCTCTGCTGCcgctgaggtcagaggtcaacaCCTACCTGGCTTCTGTCTGCCCAAGAAGGGAGTGACGTGTATTCTCCCCGTGCTGAGGGAAGGAGTGCTGACAGGAAGTCCCGAGCAGAAGGAGGAAGCGGCCCGAGCGCTGGGCGGAGTCATTAAGCTGACCTCAGCGGAGGCTTTGCGGCCGTCTGTGGTCAACATCACCGGACCGCTCATCCGTATCCTAGGAGACCGTTTCGCTTGGACTGTGAAGACAGCTCTGCTGGAGACGCTCACTCTGCTGCTGGCCAAAGTGGGCATCGCTCTGAAGCCCTTCCTGCCTCAGCTCCAGACAACCTTCCTGAAAGCCCTCCAGGACTCCAGCCGGGCCGTGAGGCTGCGGGCGGCAGAGGCTCTGGGTCAGCTGGTCTCCATACACGCCAAAGTAGATCCGCTATTCACCGAACAGCTGTCGGCCATTCGTAACGCGGAGGACTCTGGAGTCAGGGAGACGATGTTGCAGGCCCTGCGCTTCGTCATCCAGGGTGCAGGGGCAAAGGTCGACCCCACCATCAGGAAGAACATCACCACCACGCTGCTGGGCATGCTGGGACACGATGAGgatgcCACGAGAATGGCCTCTGCAGGCTGTGTCGGCGAGCTGTGTGCCTTCCTGTCAGAAGAAGAGCTCAAGAATGTGTTACAGCAGCATGTCCTCGCGGATGTGTCTGGCGTGGACTGGATGGTGCGTCACGGACGTAGTTTGGCTCTGGCTATCGCTGTGAAATCCGCTCCTGACCGGCTGTGTTCGGAGGAGTACAGCTCGACTGTGCTGGAGGCCGTCTTATCCAGCGCCACCGCAGACAGAatCCCCATCGCCTGCAGTGGCATCAGAGCCATGGGTTACCTGATGAGACACCAGCTCCGCTCAGGAGGACCGGAGAGCATCTCGCCCCGCATCATCACACAGTTCGTCAAGTGTCTGCAGAACCAGTCGAGTGACATCCGTCTGGTGACGGAGCGCGTGCTGTGGTGGGTGTGTAAGGAGGCCGAGACTCCCGCTCTGGAGCCCGCTCTGGTCAAACCGGTCATCAAAGCCCTGCTGGACAACACCAAGGACAAGAACACCAGCGTCCGAGCTCAGAGCGAGCACACACTCGTCAGCCTGCTGCGGCTGCGCCAGGGAGAAGACGGCATGCAGAGCATCAGCGCGATCCTGGACTCGGCCAGCAACGAGCTGCTGTCAGAATGTTACCGCAGATCCTTGAAGAAGATCTCCGGCCTTCCCGACTCCAACGAAGAGATCGACGACACCATCCTGACATGATGGAGCGCTTCAGCTGCCCAATCCAGTCCTGTAGCTGCTGCTGTTCTCAGAGATCCTGCATctgtcagtcacacacacacacacacacacacacacacctctcctcACGCTAGCTTTGACTCCTTCACGCCACAAGGAAAGCCTGGGAAAGTATTTATTGTGCTGAGCCCCCGAAATCATCTAAAATCCGCTTTTTCTTTTAATCGGCCATTGCGTTTGTAAATGTAGATTTTTCCGTTTGGTTTTCTTCTGAAAGATGAAGTATTAATTTGTGCCAATTCTTTTCAAACATTGTCGTTCGGATGCCCTTTTATATTTCGTTCGGATGGCGAGCGGTTTCTGGCCGTTGTAATTGATttctcggtgtgtgtgtgtgtgtgtgagagagagacgcGAGCCATTGACAACCCAAAGGATGTGACGCTGATTTCTCCGATCAGCGCTGCGTCCACTAATAATGGTTGTAcgaataaatagaaaatgaaagCCTTGATTTAATAAACGGTTTGACTTAAAGAAA

Function

symbol description
gcn1 Predicted to enable protein kinase binding activity; protein kinase regulator activity; and ribosome binding activity. Predicted to act upstream of or within positive regulation of kinase activity and regulation of translation. Orthologous to human GCN1 (GCN1 activator of EIF2AK4).

NR:

description
PREDICTED: translational activator GCN1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246386.1 True 8612 mRNA 0.57 58 2465043 2508114

Neighbor

gene id symbol gene type direction distance location
pxnb pxnb,LOC107670974,LOC107699663,LOC107752988,LOC107553049,LOC107754409,LOC107552183,LOC102784766 coding upstream 661 2431894 ~ 2464382 (+)
ctu1 ctu1,LOC107752993,LOC107699664,LOC107552165,LOC107754430,LOC107670973 coding upstream 33413 2428188 ~ 2431630 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding upstream 36440 2425319 ~ 2428603 (+)
lhx2b lhx2b,lhx2 coding upstream 133272 2323599 ~ 2331771 (+)
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding upstream 261946 2170511 ~ 2203097 (+)
rab35b rab35b,rab35,LOC107699662,LOC107671023,LOC108430363 coding downstream 2675 2510789 ~ 2518882 (+)
LOC122350791 LOC107715152,LOC100333880,LOC107699660 coding downstream 52239 2560353 ~ 2609576 (+)
myl2b myl2b,myl2,LOC107699636,LOC101071916,LOC103044021 coding downstream 286994 2795108 ~ 2802294 (+)
pptc7a pptc7a,LOC107552188,LOC107553043,LOC107671007,LOC107699657,LOC105891618,LOC108430358,LOC103044306 coding downstream 296171 2804285 ~ 2813140 (+)
srrd srrd,LOC107699635,LOC107714588 coding downstream 316158 2824272 ~ 2826296 (+)
G60342 LOC107552179,LOC107552180,LOC107670991,LOC107754429,LOC107552177,LOC107670988,LOC107682543 non-coding upstream 42826 2408095 ~ 2422217 (+)
G60335 NA non-coding upstream 120874 2343936 ~ 2344169 (+)
G60328 NA non-coding upstream 260733 2192957 ~ 2204310 (+)
G60323 NA non-coding upstream 299801 2163307 ~ 2165242 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding upstream 302999 2159314 ~ 2162044 (+)
G60347 NA non-coding downstream 12716 2520830 ~ 2524134 (+)
LOC122351006 NA non-coding downstream 48916 2557030 ~ 2559048 (+)
G60361 NA non-coding downstream 102203 2610317 ~ 2612227 (+)
G60369 NA non-coding downstream 124603 2632717 ~ 2634015 (+)
G60452 NA non-coding downstream 444902 2953016 ~ 2953994 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 425207 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 429063 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 445009 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 546672 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 1246239 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1340500 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1416747 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1521189 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 2596456 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 2718838 5226952 ~ 5229608 (+)

Expression


Co-expression Network