ybx1 (ybx1,LOC107595774,LOC107748958,LOC107693424,LOC107602459)


Basic Information

Item Value
gene id ybx1
gene name ybx1,LOC107595774,LOC107748958,LOC107693424,LOC107602459
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23658081 ~ 23664434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246391.1
TTACTCGGTCCGTCCAGTTCGATCGGCAGCGGGAGCGGAGAAAGGAAAGCGGAGAGCCTGAAGGCAGCAGCCCCCACCACCGCCGGCCCAGGTTACCATCTAGCACCGGGAAAAACATACTAGAGAGCCACCGCCGGCTTTACCAACAAGAAAACAACATGAGCAGCGAGGCCGAAACACAGCAGCCGCTGCAGCCTGCCGCCGAAGCGGAGAGCCCGTCCAGCCCGGCAGCCGCAGCTACCGCGGGGGATAAGAAGGTCATCGCAACAAAAGTCCTGGGGACAGTGAAATGGTTCAATGTAAGGAACGGCTATGGTTTCATCAACAGGAATGACACAAAGGAAGATGTCTTTGTGCACCAGACCGCCATTAAGAAGAACAACCCAAGGAAATATCTTCGTAGTGTCGGGGACGGAGAGACTGTGGAGTTTGACGTCGTAGAAGGGGAGAAGGGTGCAGAGGCAGCCAATGTTACCGGCCCGGGTGGTGTTCCTGTACAGGGCAGCAAGTATGCGGCTGACAGGAACCGATACAGGCGGTACCCACGCAGGAGGGCCCCCCCTCGCGACTACCAGGAGAACTATCAGAGTGACGGAGAGACACgggagaagagagaagaggaggaaaacGCCCCCGAGGGTGAGATGCAGCAACAGCAGCGTAGACCCACCTACCCTGGCAGACGGCGCTACCCGCCATACTTTGTGCGAAGGCGTTATGGCAGACGCCCCCCATACACCAACACACCCCAGAGAGGAGACATGACAGAGGGTGGGGAAGGTGATGAGAACCAAGGTGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGGTTCAGACCAAGGGGTCCCCCACGCCCCCGGCCGGTGCGGGAAGGGGAGGAGGATAAGGAGAACCAGGGCGAGGGTGGGCAGAACCAGGAGCCCCGTCAGCGCCGCTATCGCCGCAACTTCAACTACCGCCGCAGACGGCCACAGACAACCAAGCCTCAGGACGGCAAGGACAGCAAGGCAGCCGACGCATCAGCCGACAAATCAGCCGCTCCCGAAGCCGAACAGGGCGGAGCAGATTAACCGCCACCGGCTTGAACATCTAGACCATCCGGCCGGTTTTGTCAAGCAGAAACATCCAAGATCTGAGCAATAAGAAACATATGACTTCAATCGTCTAAgcttgcaaaaatgcatttcgaCCAGATTACCACCAATTGCCTGCAGACTCTATGCAgacctgttttctttttccattatttttatgtgacaGCTAAAAAATTTTGGGGAAACAGCAGATGTTTTTCTAAATCGGTCTTAAGTTTTTACACCAAATGGTTTTTAAGAGTAATTTGATATCTGGtcagtttgacatttttaaataactttttatgtaTCCAAACATGAATTTTAACAAAGgcaagctgaaataaaaccagAAACAGTT
>XM_043246392.1
TACTCGGTCCGTCCAGTTCGATCGGCAGCGGGAGCGGAGAAAGGAAAGCGGAGAGCCTGAAGGCAGCAGCCCCCACCACCGCCGGCCCAGGTTACCATCTAGCACCGGGAAAAACATACTAGAGAGCCACCGCCGGCTTTACCAACAAGAAAACAACATGAGCAGCGAGGCCGAAACACAGCAGCCGCTGCAGCCTGCCGCCGAAGCGGAGAGCCCGTCCAGCCCGGCAGCCGCAGCTACCGCGGGGGATAAGAAGGTCATCGCAACAAAAGTCCTGGGGACAGTGAAATGGTTCAATGTAAGGAACGGCTATGGTTTCATCAACAGGAATGACACAAAGGAAGATGTCTTTGTGCACCAGACCGCCATTAAGAAGAACAACCCAAGGAAATATCTTCGTAGTGTCGGGGACGGAGAGACTGTGGAGTTTGACGTCGTAGAAGGGGAGAAGGGTGCAGAGGCAGCCAATGTTACCGGCCCGGGTGGTGTTCCTGTACAGGGCAGCAAGTATGCGGCTGACAGGAACCGATACAGGCGGTACCCACGCAGGAGGGCCCCCCCTCGCGACTACCAGGAGAACTATCAGAGTGACGGAGAGACACgggagaagagagaagaggaggaaaacGCCCCCGAGGGTGAGATGCAGCAACAGCAGCGTAGACCCACCTACCCTGGCAGACGGCGCTACCCGCCATACTTTGTGCGAAGGCGTTATGGCAGACGCCCCCCATACACCAACACACCCCAGAGAGGAGACATGACAGAGGGTGGGGAAGGTGATGAGAACCAAGGTGGTCCAGACCAGGGCAACAAACCAATGAGGCAGAACTACTACAGAGGCTTCCGACCAAGGGGTCCCCCACGCCCCCGGCCGGTGCGGGAAGGGGAGGAGGATAAGGAGAACCAGGGCGAGGGTGGGCAGAACCAGGAGCCCCGTCAGCGCCGCTATCGCCGCAACTTCAACTACCGCCGCAGACGGCCACAGACAACCAAGCCTCAGGACGGCAAGGACAGCAAGGCAGCCGACGCATCAGCCGACAAATCAGCCGCTCCCGAAGCCGAACAGGGCGGAGCAGATTAACCGCCACCGGCTTGAACATCTAGACCATCCGGCCGGTTTTGTCAAGCAGAAACATCCAAGATCTGAGCAATAAGAAACATATGACTTCAATCGTCTAAgcttgcaaaaatgcatttcgaCCAGATTACCACCAATTGCCTGCAGACTCTATGCAgacctgttttctttttccattatttttatgtgacaGCTAAAAAATTTTGGGGAAACAGCAGATGTTTTTCTAAATCGGTCTTAAGTTTTTACACCAAATGGTTTTTAAGAGTAATTTGATATCTGGtcagtttgacatttttaaataactttttatgtaTCCAAACATGAATTTTAACAAAGgcaagctgaaataaaaccagAAACAGTT

Function

symbol description
ybx1 Enables C5-methylcytidine-containing RNA binding activity and eukaryotic initiation factor 4E binding activity. Involved in embryonic morphogenesis and mRNA stabilization. Acts upstream of or within several processes, including negative regulation of mRNA processing; negative regulation of translational initiation; and oocyte maturation. Located in nucleus. Is expressed in eye. Orthologous to several human genes including YBX1 (Y-box binding protein 1).

NR:

description
nuclease-sensitive element-binding protein 1-like isoform X2

GO: NA

KEGG:

id description
K09276 YBX1, NSEP1; Y-box-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246391.1 True 1461 mRNA 0.54 8 23658081 23664434
XM_043246392.1 False 1448 mRNA 0.54 8 23658082 23664434

Neighbor

gene id symbol gene type direction distance location
ppih ppih,LOC107595772,LOC107602460 coding upstream 1230 23635149 ~ 23656851 (+)
dpp9 dpp9 coding upstream 45578 23598728 ~ 23612503 (+)
si:ch211-251b21.1 si:ch211-251b21.1,LOC107748962,LOC107595769,LOC107687113,LOC107691059,LOC107602462,LOC107755276 coding upstream 60950 23586529 ~ 23597131 (+)
plch2a LOC107687112,LOC107595766,LOC107691057,LOC107748961,LOC107602463 coding upstream 74704 23482895 ~ 23583377 (+)
mthfr mthfr,LOC107602465,LOC107691055,LOC107687111 coding upstream 201298 23447191 ~ 23456783 (+)
hes2.1 hes2.1,LOC107748974,LOC107687139,LOC107577158 coding downstream 75916 23740350 ~ 23741231 (+)
hes2.2 LOC107595804,LOC107748990,LOC107687144,LOC107734829 coding downstream 85812 23750246 ~ 23752431 (+)
LOC122350042 acot7 coding downstream 164232 23828666 ~ 23864915 (+)
LOC122350978 gpr153,LOC107687122,LOC107693426 coding downstream 206802 23871236 ~ 23900075 (+)
LOC122351094 sult1st3,LOC107727994,LOC107594958,LOC107727992,LOC107687124,LOC107687147,LOC107687125 coding downstream 278327 23942761 ~ 23953590 (+)
G66418 LOC107748960,LOC107687117,LOC107691060,LOC107595771,LOC107602461,LOC107755278 non-coding upstream 34610 23620927 ~ 23623471 (+)
G66416 NA non-coding upstream 41399 23615216 ~ 23616682 (+)
G66351 NA non-coding upstream 223048 23434118 ~ 23435033 (+)
G66350 NA non-coding upstream 224336 23432809 ~ 23433745 (+)
G66344 NA non-coding upstream 419828 23237977 ~ 23238253 (+)
LOC122350145 NA non-coding downstream 12000 23676434 ~ 23681832 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other upstream 24016 23632350 ~ 23634065 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other upstream 247520 23403713 ~ 23410561 (+)
prdm16 prdm16,si:ch211-263k4.2 other upstream 256519 23054616 ~ 23401562 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other upstream 670919 22973995 ~ 22987162 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other upstream 732313 22899436 ~ 22925768 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 88134 23752568 ~ 23804049 (+)

Expression


Co-expression Network