sort1b (sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994)


Basic Information

Item Value
gene id sort1b
gene name sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12199611 ~ 12213569 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246424.1
AAACACCGTCAAGGTTACAGTCTGTTAAAGCAGCTTGGTTGGTGTGCAGTTTTATTTGCGATCTTAGGGAACGATCAATTGTcactgatcaaataaaaaagggCGTTGATGTGCTCACTTAGGAGGCAGCGCTAATAATATGAGCGGTAGGGACCTTTCGCTGTCACAGGCAGTCTGTTTTTGTTGATACAGTCAGCAGCCGCTCAGGAGGGAGACACAGAGGAATTAATGCGTATTTAAACAGCAACACAGTCGTGTTGGAAATACAGTGAAGGCGAAAAATGAGAGGCCTAGGATACTTTATTGCACTTTTATTCTTTCCCATGACATTTGGTGTGGATTTCCATGTGGAACCAGGATCGTATAACGCGCGCCGGGTTTACGTGAAGTCTCCCGTAGCCGCCAGAAGTCTAATCGGAACAGGATCGGATGCAGATATCTCCCCTATCCACCATCACGTCCAGAAAAGGAGCGCAGATGATGGACCAGACTCCTGTAATGGGTTGGATGGATTTGAGACCAAGTTAACTAGAAATACGCACAACTTTACCTTTCAAGATATCAGTCGGTCTGTGTCTCTGGCCTGGGTGGGGGATGGAACTGGGGTAGTGCTGGCCCTGACAACATTTCAGATGCCAATAGTCTTCCTGCGATTCGGTCAGTCTAAACTGTACAGGAGTGAAAACTACGGAAAGTCATTTGAGGATGTCACAGAACTTATCAACAACACCTTCATCAGCACTGACTTTGGGATCACTATCGGCCCGGAAAAATCTGGCAAGGTGATCCTCACGGGAGATGCTTCAGGAGGCAGTGGTGCCAGAATTTTCCGTTCAAGCGATTTTGGCAAGAGCTTTAAACACACAGAATTGCCCTTCCACCCACTAATGCAGATAATGTACAACCCTCAGAACTCAGATGTTCTTGCAGCCATCAGTGTCACGCGTGGTCTCTGGATCTCTAAAGACTTTGGTGAAAAATGGAACAAAGTCCATGAGATGGTGTGCGTGGCCAAATGGGGAATAGATACTCTGTTCTTCTCCACCAACCTCAATGGATCCTGCTacGATAAAGGGGTGCTGGTGCTGAAAAGGTCAACTGACCTTGGTGTTAACATTAAGACAGTCGCAGAAAGGATCTATTCCTTCGGGATCGGGGGGCGCTTCCTGTTTGCATCAGTTATGGCTGGATCGGGAAACGTAATGCCGTCAGCGTCTGAGGACATGATACGGGCAATACATGTGTCGGTAGACAAAGGTGATACGTGGAACATGGCACAGCTTCCACCTGTCGGCCATGAGCAGTTTTATTCAATACTGGCAGCCAATGATGAAATGGTCTTCATGCATGTGGATGAACCAGGAGacacTGGGTTTGGCACCATCTATGTATCAGATGACAGAGGCACTGTGTATTCCAAGTCTCTAGAACGCCATCTGTATACGACCCCAGGGGGTGAGACAGATTTCACGAACGTCACTTCCCTCAGAGGAGTCTTCACTACTAGCGTGCTGGCAGAGGATGGCTCAGTACAGACGGTAATATCATTTGATCAGGGAGGTGAATGGGTTCCTTTGAAGAAACCATTAAACACCAAATGTGATTCTACGGCCAAAGATCCAGAAATGTGTAGTCTGCATATTCATGCTTCGTACAGCACCTCCATGAAGCTGAATGTTCCCATGCTGCCAATTAGTGAACCTAATGCTGTGGGACTTATTTTGGCTCACGgcagTGTAGGCGACGCGATCTCAATGATGACTCCTGATGTGTATGTTTCTGATGACGGAGGCTACTCCTGGCTGCAGGCTCTGAAGGGGCCGCATCATTACGCCATCCTGGACTCGGGAGGCCTGCTGGTGGCGGTGGAGCACAACGAAGCCATACCCATCTCTGAGATCAAGTTCTCCACTGATGAGGGGCAATGCTGGCACGTTTATAAGTTCACACAGACGCCGATGTTCTTCACAGGGCTGGCCTCAGAGCCTGGTGCCCGCTCAGTGAATGTGAGTCTGTGGGGTTATGAAGATGCTCTGATCAGCCACTGGGTAACTTACACCATTGACTTTAAAGACCTGCTGACACGTAACTGCCAGGGGAACGATTACGTGCAGTGGCTGGCACACTCCGATGACATCAGCGACCCTGACGATGGCTGCATGCTGGGTTATAAGGAACGTTTCCTGCGTGTGAGAAAGGACTCGGTGTGTTGGATTGGCAGAGATTACATAGTCACGAAGGAGCCCACGCCGTGCAGGTGTACACTGGATGACTTCCTGTGTGACTTTGGATACTACCGTAAGGAGAACAGCTCAGAATGCATAGAACAGGCTGACCTCAAAGGCCACGATTTGGAGATCTGCATCCATGGGAAAAAGGAACAGCTACAGACCAATGGgTACCGAAAGATTCCAGGCGATAAATGTGAAGGAGGAGAAGAACCAGAAAGAAGGGTGATCGACCTGAGCAAGAGGTGCGTCAGCAACCTGCTGGAGCCTCAACTGCTGACAGATAAATCTACCTCACATTCTGCCCCTATCATTGCGATCGTCATAGCCATCCTGCTGACCGCTGTAGTGTTTGGAGTTCTGTTTGTAAAGAAGTACGTCTGTGGCGGAAGGTTCCTTGTACACAGATACTCTGTCTTACAACATAATGTGGAAGCCAATGGCATAGATGAACCTCTGGACACAGATGTTGCCGGAGCACCCAAGAATGATTTCCACGATGACTCAGATGAGgaCCTACTTGAGTAGAGAGCATTAGGTGAGCAGAAGAAGCAACATTTCCTGTCATTCAGGCATTACTGCTGCTGTCTCTATCTTCCTAAAGCACAAACCAGCTGTCAGCTTTCTCAGACTTAATCTACCAGCTAACGTCATGCACTTCCTTGCTTCTCGACCAACGGGAGGAAACCTGGTTGCTTTTCCACCAATAGGAAGGCGTTCTTACGGTAGAAGAGGCTTTTGAATGTAACTCTGCCTAAAGCAGTGAAGAAGCGTTTAAAATGCTGTATGTGGGAGTTTCTGTTCTTGCTTTTGACATCGGGGTCTTCTGGGCGCGATTTTAAAGGTTCAAACCTTTGTTTGATGAGACTGTCAGTGGGACACTTGTAAAAtacttgctttctttttatgtaCAGATGCCCTTATGTGAGAGCTAGAGGTATTATTTATCCTCGTGGTCatatcagatttttatttgagcagaaattttattcagcaacagGATACAATGAATCAAATCGCACGCACGTAATGCAAGCATCCCAGATTTAAATACTGTGCTACTGAACCCTGACTGTGTTTATCACCAGAATGTGATCATAACTGCTGTCAATGTCCACTTTGCTGTAAGTAATCAGGTGCATTAATGAAAATAGCAATAACATGCTGAGAAGCATTTAGGCAATAGATCTGGCTTGACAAAAagggaaaatatttataatttaggaTTTATTACTTACCTAAAACTGTGTAGCTATGTTATAGGCTGTGAGTTTAATAAAGAAGGAATTTGATATTTGGACAAATAGCTGTAGAACATGAAGATAAATGACACATATTAAACAATTCATTTGTAAGCTGCTGTCACACATCAAATAAAAGCGATTTCTCTGACGGTTAGGAaagattttgtaataataaatatttttatgaaccGAGCAATGATGCAAATGCATGTACTATATAATACAGTTGTAGTTTGTGTACAAACTTTGCCCGAATCAAATTTTGTagttaaactgttttattaGCTTTCAACATTTGTGCTGTTTCTTGGTTCTTGTCTTGACAGCAGGAAAGTCCCATGTtatcaagaaaaaaagtgtgactttgttttttttgttttttttaaccgttGTGCACAGAAACACATAAAACTTGACTCAGTGTTTGTGTGACAGACCATTAGTCGTAATAATTTtgcatgtgtttattatttctatGTGTGGCAGTGGTCTTTGGCCATGCGATTTCATTTCGATTATACAAATGCAATAGAGCAGTTTAGCACATTTCCACTGGCACTTCCTGTTTGCTTAGATGTTTGATGTCTGATGCTGTGAGTGTTCTATgaagtgtgtatttaaatatcagtTCTACAGTTCATTTAGAGCCATTTCAAAATTTCTCATAATCGCTTACACGTACCTAAACAAAAATCTCATATTTTCCTAAAAGATGACAATCTCCAACGCAAAGATTATGAGTTACATAGTGTTTAATAGGTATAGAAATCTAGTGTATATTTTGATTCAAGTGCCTAGCATGGAGGCATATCTTACGCCTTCCAAAGAAATGTAATCTCATCTgcaaataattctaaaataagaGAACAATCTCATTTCAGTAAGAATTACCACAGCTCGTAATGAGGCTTGACAAAATGATTATTCTTTGACAAATTGTGTAAACTTTTTATACAACGGAATTAGAACAAATTATGACTTATTTCTCATTCTTACATTCAGTTGCTCTCCATGCTTGGGGTAATAGATGCAGtgcaaatgaaatatattgtaaaGGTAAATGATATCCATTGTGgcagtgattttatttataagagGTGGTACACTTTTCTTGCTGTGcaaaattaatgtatatattagttGTGAAGCTCTGTACATATACAGCAATTCCgactttatcttttatttttgctctgtATATTTGGAATAGAACTGTTTGTTTGAGAAATAAATTGATTTGTCCCATTAa

Function

symbol description
sort1b Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Predicted to be integral component of membrane. Orthologous to human SORT1 (sortilin 1).

NR:

description
PREDICTED: sortilin-like

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12388 SORT1; sortilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246424.1 True 4721 mRNA 0.43 19 12199611 12213569

Neighbor

gene id symbol gene type direction distance location
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding downstream 2376 12190007 ~ 12197235 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding downstream 10126 12172189 ~ 12189485 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding downstream 28241 12168887 ~ 12171370 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding downstream 31471 12149987 ~ 12168140 (-)
alx3 alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019 coding downstream 107949 12085919 ~ 12091662 (-)
amigo1 amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117 coding upstream 15123 12228692 ~ 12235738 (-)
gnat2 gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114 coding upstream 62538 12276107 ~ 12282715 (-)
eps8l3b LOC107731156,LOC107668036,LOC107550496,LOC107591810,LOC107679192,LOC107711925 coding upstream 102147 12315716 ~ 12324419 (-)
atp5pb atp5f1,LOC107668113,LOC107731279,LOC107679218,LOC107711984 coding upstream 111216 12324785 ~ 12327978 (-)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458,LOC107668004,LOC107711923 coding upstream 150217 12363786 ~ 12425996 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding downstream 1244 12159189 ~ 12198367 (-)
G63321 NA non-coding downstream 60213 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding downstream 64883 12131491 ~ 12134728 (-)
G63350 NA non-coding downstream 176858 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 179658 12019711 ~ 12019953 (-)
G63395 LOC107591850 non-coding upstream 89159 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 118887 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 122197 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 122545 12336114 ~ 12336823 (-)
G63408 NA non-coding upstream 123307 12336876 ~ 12337194 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 145081 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 420360 11778271 ~ 11779251 (-)
G63095 NA other downstream 583686 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 853623 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 1030138 11131670 ~ 11169473 (-)
G63385 NA other upstream 50125 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 128591 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 275628 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 772085 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 972298 13185867 ~ 13246130 (-)

Expression


Co-expression Network