ahcyl1 (ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038)


Basic Information

Item Value
gene id ahcyl1
gene name ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12172189 ~ 12189485 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246467.1
CGCCCACCGCTGATGCTGCTGCTGGCCGTCAACCGGACAGTCAAATATAATAATCTGTGGTCCACTGCGGCTCGAGTGATATTACATTCTTATAAACTAGCATCCGCGTCCGTTTTCAATCCGCATTCGGCAGTTTGTTCCTCTCCTGTCGACGTTTTTGCGCAATCGCCCCTTCCGCTTTTGAGACAGTCGGAGCTTTAGAAGCGCTCCGGCAACATAAGGACGAATCGAAAGGTTACAGTAACAGAGCTGAAGGACTACCGCGAACAACCACCGGCAACGGCTCGAAAAGCGCGAAGATACAGATTGCCATGACAGACTGTGTCGGGGATGCGAAGCTGGAGGTGAAACAGGCCAGCAAAGAGTTTAAAGAGAGCGAAAACGTTGCCGAGAAATACTCCGCGATGACAGGCACGAAGAACAGCGACGTGAACATGAACGTCGGCGAGCTGTCCGCCGCATTCACTGCGGTCCCGACCCACAAATCCATGAAAAAGCAGATTCAGTTTGCCAACCAAGAGGAAAAACAGGAGTTCAGCAAGTTCCCTACAAAGACTGGCCGTCGCTCCCTGTCCCGCTCCATCTCTCAGTCCTCCACGGACAGCTACAGCTCAGCGGCATCTTACACTGACAGCTCTGATGATGAGACGTCTCCTCGTGAGAAAAGCCAGGTCAACTCAAAGGGCAGCAGCGACTTCTGCGTCAAGAACATCAAGCAGGCAGAGTTTGGACGGCGGGAGATCGAGATCGCTGAGCAAGATATGTCTGCTCTCATTTCCCTGCGGAAGCGAGCTCAGGGGGAGAAACCCCTCGCTGGGGCTAAAGTGGTTGGATGCACTCACATCACTGCACAGACTGCTGTCCTGATCGAGACACTTGTGGCACTGGGTGCTCAGTGCCGCTGGACTGCGTGTAACATTTACTCCACTCAGAATGAAGTGGCCGCAGCTTTGGCAGAGAGCGGTGTTTCCGTTTTTGCCTGGAAAGGTGAATCAGAAGATGACTTCTGGTGGTGCATTGATCGCTGTGTCAACATGGAAGGCTGGCAGGCAAACATGATCCTAGATGATGGTGGCGATCTGACCCACTGGGTGTATAAGAAGTATCCAAGCGTTTTTAAGAAAGTGCGTGGGATCGTGGAGGAGAGCGTTACAGGTGTACACAGGTTGTACCAACTCTCCAAAGCTGGCAAGCTTTGTGTCCCCGCTATGAATGTAAATGATTCCGTCACCAAGCAGAAGTTTGATAATCTGTACTGCTGCAGGAGTCCTTTGGATGGTCTGAAGAGAACGACAGATGTGATGTTTGGTGGGAAGCAGGTGGTGGTTTGTGGTTACGGAGAGGTGGGAAAAGGTTGTTGTTCAGCTCTGAAAGCGCTTGGAGccattgtgtgtgtgacagagattGACCCTATTTGTGCTCTTCAAGCTTGTATGGACGGCTTCAAAGTGGTGAAGCTAAATGAGGTGGTTCGCCAAATGGACATGGTTATCACCTGCACGGGGAACAAAAATGTTGTGACCAGGGAGCACTTGGATCGAATGAAGAATGGCTGTATTGTCTGCAACATGGGCCATTCCAACACTGAAATTGATGTGGCGAGTCTGAGGACTCCAGAGCTCACCTGGGAGAGGGTGCGTTCACAGGTTGACCACGTCATCTGGCCTGACGGGAAACGAGTGATTTTACTGGCAGAGGGCCGGCTCTTGAACCTGAGCTGCTCAACAGTCCCCTCTTTTGTGCTATCAATCACAGCCACAACCCAGGCTTTGGCCCTGATAGAGCTGTATAATGCACCAGAAGGTCGCTACAAACAGGATGTCTACCTGCTTCCCAAGAAGATGGATGAATATGTGGCCAGCTTGCACCTACCCAACTTTGACGCTCATCTTACAGAGCTGTCAGATGAACAGGCCAAATATATGGGCCTGAATAAGAACGGACCCTTTAAACCAAATTACTACAGATATTAGTGTAACTGGATGGATTTAGCCTTCATCAGAGATGGAGAGACCTGCATTAACCAGTGAAGCAAgagatttattttctattaatatacatttcttaaaacGAAACTTGATTTTACTGAatgttattcttatttaataGTGTTACTAATGTCCAGTGACAACATATACGTCCATGTCACTTTTAGGCTTATGTGCATTGTTAGAATTTATGTATTATAGCATTTGTTGTAAATCATCTTTTAACCTAGGTATGAAAAGGACCACCGTCTATGGCTCTAAAAACGTGCCAAATATTGGTTATAGTTATTGATCAAATAAGATAAGAATAATTATcaatgctttgtttttacatgGTTATTCTATTTACCCAAGGTTATGTTACACTCGATTGTTCATGACCAAAATAATTGTCTTTGTGGCTTTTAGACTCAGCATAATATTCTTGATTTATCGCTATTgcataagaaaatataaaagcttttttttgaatgaatgtacTGTGTATTACTGCTAAAAGCTAGAGTGTTCTGGCAATATGATACACACCACTGTGTGCAGAATCTTCCGTGACCTGGCAGCACATGCTGCTAAATATACCCCGCTTGGGGGGGGATTTTATGAATTGTCACCAATAGGGATTCTTTTCCCTTTCACGTTCTCACACAGTCCAGTCATCTCTGTGGCCTTTTATGAATTCTTCTGTTAAAATAACGTAGACCATTATATGTTATTTAGGCCGATCTTAGATGAAAATACCATAGATTTGGGGATATTCTGTGAGTCTTTTGCAGAATAGTGTGGACCCCCAACATAGTCACACATAGCCAGCTAGACTCACGAGAAGCACACATATCTTGATCACCATCTCTAAGGGACTGCAAATGTCTTAAGCAAATATCACTGTGAACGCTGTCATTTGAATATTTGCCTCATCTGCACTTTGTGATTTACCTTTGCATACATCATTTGTCAGATGTGATGTCATCAAATCCCTGCATTAAAGATCTTGCTGTCACAGTA

Function

symbol description
ahcyl1 Predicted to enable adenosylhomocysteinase activity. Involved in embryonic morphogenesis. Acts upstream of or within dorsal/ventral pattern formation. Predicted to be active in cytosol. Is expressed in several structures, including hatching gland; nervous system; pectoral fin musculature; polster; and pronephric duct. Orthologous to human AHCYL1 (adenosylhomocysteinase like 1).

NR:

description
PREDICTED: adenosylhomocysteinase 2 isoform X1

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0004013 adenosylhomocysteinase activity molecular_function

KEGG:

id description
K01251 E3.3.1.1, ahcY; adenosylhomocysteinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246467.1 True 2990 mRNA 0.46 18 12172189 12189485

Neighbor

gene id symbol gene type direction distance location
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding downstream 819 12168887 ~ 12171370 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding downstream 4049 12149987 ~ 12168140 (-)
alx3 alx3,LOC107680275,LOC107711935,LOC107731154,LOC107591866,LOC107668019 coding downstream 80527 12085919 ~ 12091662 (-)
rbm15 rbm15,LOC107731203,LOC107680058 coding downstream 89151 12078239 ~ 12083038 (-)
zgc:110353 zgc:110353,LOC107680259,LOC107711939,LOC107591867,LOC107668023,LOC107731165,LOC107550464,LOC107711928 coding downstream 159039 12010488 ~ 12013150 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding upstream 522 12190007 ~ 12197235 (-)
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding upstream 10126 12199611 ~ 12213569 (-)
amigo1 amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117 coding upstream 39207 12228692 ~ 12235738 (-)
gnat2 gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114 coding upstream 86622 12276107 ~ 12282715 (-)
eps8l3b LOC107731156,LOC107668036,LOC107550496,LOC107591810,LOC107679192,LOC107711925 coding upstream 126231 12315716 ~ 12324419 (-)
G63321 NA non-coding downstream 32791 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding downstream 37461 12131491 ~ 12134728 (-)
G63350 NA non-coding downstream 149436 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 152236 12019711 ~ 12019953 (-)
G63344 NA non-coding downstream 154838 12016726 ~ 12017351 (-)
G63395 LOC107591850 non-coding upstream 113243 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 142971 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 146281 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 146629 12336114 ~ 12336823 (-)
G63408 NA non-coding upstream 147391 12336876 ~ 12337194 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 117659 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 392938 11778271 ~ 11779251 (-)
G63095 NA other downstream 556264 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 826201 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 1002716 11131670 ~ 11169473 (-)
G63385 NA other upstream 74209 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 152675 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 299712 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 796169 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 996382 13185867 ~ 13246130 (-)

Expression


Co-expression Network