amigo1 (amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117)


Basic Information

Item Value
gene id amigo1
gene name amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12228692 ~ 12235738 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246481.1
tgtgtgtgtttgcactgtGCAGGTCTGCTCATGCGCCCATGAagagatgctgctgctgctgatcaGAGGTGTGTGCGCTGCGGCGGGCTTATTTACACCCGTTCAGTCACACTGCATCATAGAAAAGCTCTGGCGCTCCTTAGGAAATGGACTTTCTAAAGGGATTACTGTGTCTCCGCGGTGATACATCTCAAGCTCTAAATTCACATCATCAGTCTCAGAAGCTGTTACTCCAAACAGCGTGGAAAGGATTTACGCAGCCACATTACTGAAGAGGATTCTACCACTTATGCTGCATCCACATTTTAACTGCGTGTCAGAGATGCCCCCTTCCATAAAGTGGTGCATTAGGTGGGCTGTCTGCTTGTCCTTTATTCTCGCACAGATCCCCAGGTCCAGAGGATCAGCACTGAATTGTCACAAAATGTGCATATGCGCCAGCAACATCGTCAGCTGCTCCAAGATGAACTTGACAATGGTTCCGCCCGAGCTGCCCAACTACACAGCTGTGCTGGACGTTAGTTTTAACGAGATAACCGGACTACGCGCACAATGGACCAAGCACAAACTTCCCAACCTCCACAACCTCCTGCTCAGCCATAACGGTTTGTCGTTCATCTCTTCTGAGGCGTTCATTTTCGTAAAGCAATTGCGCTACTTGGATCTGTCATCGAATAAACTGCGACAGCTGGACGAATTCATTTTCGAGCCACTGATACACCTGGAGGTTCTGTTGCTCTACAACAACCAGATCTCGCAGATCGACCGTACGGCCTTCTCAGGCCTCGCTGGCCTGCAGAAGCTCTACCTGAGCCAGAACCAGGTGTCCCGCTTCCCCCTGGAGCTCGTCAAGGACAAGAACCGACTGGACAAGCTGAGCCTGTTGGACTTGTCTTCCAATCGGATCAAAGTTCTCCCCATTCAAGACCTCCAGGCGCTGCCGGCCTGGATCAAGAATGGGCTGTACTTCCACAACAACACCCTCATCTGCGACTGCGAGCTGTACAGTTTGATGGCTCATTGGTATATCCGACGGCTCAATTCAGCTGTGGACTTCAAGGACGAACACACCTGTGTGAATCCCAGCCCGGACAAACGGGTGCTGCGTTTGTATGATCTCAACATCCACATGAACTGCAGCACATTTAAAGAAACCGACCAAGAGGCTTATTTGGAGCAGACGCTCACCCTCAGCTGTGATACCAAACAGCGGAACATGACCAAGACCTGGATGCTACCTGGAAACATATTGGTGCCTCCTGACGGTAACCAGAGCGatacaaataatgaaataaagttttTCAATAAGGGCAACATACTTGAGATAAAATCGATACAACCTGAGGACTCGGGTGTGTACACTTGCTTCGCCGTGAGTGAATACCTCAACGAAACGCTCTATGTGGTGATCAGAGTCCACAACTTCACCATCAACGGCAACGGCGAGACCCTCAACACCGCGTACACCACTCTGGTGGGCTGCTTGGCTAGCGTGGTCCTGGTTCTTATTTATCTGTACCTGACGCCCTGTCGCTGCTTCTGCTGTCCCGACCAGGGCAAAAAGAACCAGCATGAAGACAGCATCCATTCCTCAATGCTCAGCGCCACCCCGACGCACGAGGATATGGCAACCAAAGCAGAGCTCAACAGGCACGTGGCCTTCATAGACCCCAAGGACCTGCAGGGACAGAATGGAAAGCTGAACCCTAATGGAGAGGAAGACGTGGATGAGGAGGCCATGCAGGGAAAAGGAAAGCGGAAGAAATCGGTGGCAGACTCGATTAGTTCGGTCTTTTCTGATACTCCCATTGTAGTCTGAGAGGGGATGTGTCTTTTTGGCTAGAGACAGTTCTTTGTTGTGGCTTTCCTGGACTAAGAGACTAAAGTACACAGTTTGCCATCCTCAGTGTTTGGCTGTTTCTGCAAAACCTTTCCAGCATTTTAATCTGTAGCACTTAAGTATATACTGTGAAAAGGTCTTGCCATATTAGTGGAATCTAAACTCGGAGTGTTTAGATGTTCCTGTGAGTTTAAGCCCACTAAGTGTGACTAGAGATAGTCTGGGTaaacaacaaatgcaatttGCGATTTCTCAATGATCAAGCTAGATAGCTATAGGTTGAGAGACGTTAGAACATTAATACATTCTCTATATAATCACATCATAAGCATGAGCTTTGCAAGACTGctaatgttaagaaaaatatagCATAGAATGAAGCCCTTGTAGCTAATCATATTTACCACAATTTATCCTAACTGACCAATCTTATCACTTTTTGTAAAGCCATATGGAAAAAGGAAAGCAATGCACATTTGAGAGTACAGTCACAAGAAATTGATGGAAAAGTATGCGTTTCTGTGGAACGTTAGAAGTTGCTTTGAAACTGTATATGAAACATCCTTCTCCTATATATGGcaatggaacaaaacaaaaaactcaaTTAAACTCAACTGGCTGTTTGAATCTAGACTCTTTCAGTCCAATTTCATTAGCAATATTAGATGTTTAAATGTTAGATACCAATATAATACCTCCATCTACAtgaaactatatttaaatacagcaaTTTTTGAACACATTAACCCGCGCATAAAAAATGCAGAACGTGTGCATTTTCAGCCACTTGAGCTCATCTGTCATGACAACCAGGGAGTGACATATAACCGAAATGCTAATGCATTCTTTTAATAGAATGACGTGTCCCATCTGCTTGCATTCTCATCATTAAAGCTATGATGAATTGAGCCTGGATTCAACAGCCAAAACAATTTCGGACACTCAGACCTCTTCTCACTCTGCGTTCATTTGCACATGTGGTGGTTGGAGTCAGTGCCGACTCGTCCATAGTCAGAAtggatgtaatttttttttttttttaaagcgccGATGTAATAAGCCAAAGGCTGGGggaatttttaatgattattttttagcTCTGACCATTAGCGTtttctaaatgaattaaaaatcaaGTTGGAAGTTTGAACTCAGGTCAAAATTGCAGCGCTTAGCCAAATTCCCCTAACGTTCTGAGATTCTAAATTATTACTACAGGCTTACAGCAGCGATCTTTAAAAGACcaatataatatttgcatatacaATGCCATAGGAATCTAAAGAGACTGCTATGAATCATAATGTAATGCGTAAAGCTTGTTGGCTGTGTTCAAGGTAGATGACTAGATGCATTCCAACCAGATGTCAACATTACGCATTCCGATTACAACGCCATTGTCTTGCTGGACTCGAAAGGCATGATAGGACTCTTCTAGAACGCCAATGAATGCCGTTATAGAACCAGACGTGGATTTAGACCATCACAGTCTCTAGAACCCTTAATTCTGGGAATGCCACTTCCATTCTTGTGTTCCTGGAAAGAAATCGGACGCATCTCACGTGTTAACCATAACCGCATATTTATAACAGGGTCTGGTTGAGATCAACGGGAGCAATCGTAGTTTCCTCCGACCTCTTTCCTTAGTAACATCGTAATTACATCCTGTTTTGCGAGCGAGGAAGTGGGTGAAGCTATTAAATGTTTGATAGGTGGATGAACTCACAAACAGTATTATCTCAGGGAGAGGGAATGACAGATAATAGCAGCTATGGCAGACTGCAGTCATGGGCAGTTACGGTCTCTTACACGTCTCTCCAGCTGCAATCCAAAATTAGTGTGGAGGGGAGGGAAAGGCCTTACCATCATGAGCGCTGTGGGAGGAGGCCTGAgagaaaagagacagaaaagcCAAGTGCTCCCCCTAAAACCACATCCAGCAGCTTTTCGCCCCTGTTGTGTATGTTCTTCTGAACTGTGTGTCCTTGGCTATTTCACTATGAGCAGACTTCCACTGTTCATTACTCAGCATTTGACAGTACATCTGTGCTTTTGTATGTGcaaacagtgtttgtttttacagtgtttatgaGATCGTGTCATTTTAGGTAGCTTTTTCTCCCCCTTGAGGTTCCAAAGAGACTCAACGAATTCCTTGTTCTTCTGTGTATTGTTGTTCCTATACAGTTGTCTAGATTCCACTTGTGACTATAGGATATTGGTAAACCTATTTTAATGACACTGACTGTAAAAGTCTTTCTCTGTCATGTATTTTGAAATTTGATCATCTATTTGTCTATATGTCGTTATTTAGGCAcagaaattgagatttatttaaTGTCAGTTAATTAAATCTCAAGAAGCATCACAGACTGCATCAAAGTACCAAAACTCTGTTGCATTCATTAGAAATTTCAGCGTGAATTGCTGTTTGCAGcctgttttcttttgtaatcagagaaaaaaatggGGCAGGAAATTGAATTGTGAGAAGAGCGTTATAAACCAGAATGGAGAACGAAGAACGAAGGCAGGTTGGGTGAATAAAATCACTGAATAGCTCTGGCTATTGGTTAACATCCAATAACCAAAAAAGAAAGCTAGacaaactatttatttgctttaaaaaactgAAGAATTGATCGTAATAAATCTAGTAAATAAATAGAGTCATTTAGATTACACGTTGACTTGCAGCCTTTCAGAACATGAAAATAGACCGTTTTAGAAGAACTTGTGCAAATGTTAACTCTCAAAACTGTCCTGTATTAGCTTTAATGCTGGTTTAAAGGGGCTTTCATACCAAGAACGATAAAcataataacaaatacaaaCCTGTAATAATCATTATACTTCTTTACAAATAGTGCATTCCAAACCACAACTTTAACTATAAGGGCACCTATGGCTGCGATCACTTTTACAATTTTTCCTGCCAGCTgatgaacaataataaataaatatatatatatataaaaaactctGAATACATACAACTTCAACATTTAAAGTGGGAATTACAAAAGTGCAGCATTTACCTACAGcacaataaacaatgttttgtttatgtggttttgttGGACATGGAATAAAGTTATTGTTGCATTTATCCTTTTTGATATGAATTGCCTTAAAAACCTGGTACTAGAGATATGCAGTACTAGAGACTAGATCAAGTCCCTACAGTTCTTTACTAACGTTTAGGTTCTTAAAACGCTAGATTAACAGAAttcaaaacatgtaaaaatatcaaCAGCATTTTACAGTTAGTCTATTAAGTCTAGATTTgagtacatatataaattagaCTAACACAAAGAATCTCAGAAATGTAGAGATATCTGTACCAATTCTTAGTAAGCATCctgatatacatacatacagctAGAACTGTGCAAACCCTAATTAGTTTGAGATCTAAAGTGTCAGCAATCATTACTAGGCTCTGAAAGCGAGAATAGAAATGCTGTCAGGTCCAGTATCAGAGCTAGAGGCCTTACTGTAAAAGCTTATTTAGTCTGAATGTCAAAAATGAGACTGATGAGTGCTGGGTTTCCCTCTCCTAAACCGAAACGGACTGCTAGGAGGATAACCCAGAAACTGATTCTGGACCAGCGGTCCTCCCACATGGAAGTTTACCTATGAGAAGTatcatttattaacaatataaaagcaaataaaaaatgaaa

Function

symbol description
amigo1 Acts upstream of or within brain development. Predicted to be integral component of plasma membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human AMIGO1 (adhesion molecule with Ig like domain 1).

NR:

description
PREDICTED: amphoterin-induced protein 1-like

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG:

id description
K22529 AMIGO; amphoterin-induced protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246481.1 True 5529 mRNA 0.42 2 12228692 12235738

Neighbor

gene id symbol gene type direction distance location
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding downstream 15123 12199611 ~ 12213569 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding downstream 31457 12190007 ~ 12197235 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding downstream 39207 12172189 ~ 12189485 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding downstream 57322 12168887 ~ 12171370 (-)
kcnc4 kcnc4,LOC107731196,LOC107668031,LOC107711934,LOC107679013,LOC107591816 coding downstream 60552 12149987 ~ 12168140 (-)
gnat2 gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114 coding upstream 40369 12276107 ~ 12282715 (-)
eps8l3b LOC107731156,LOC107668036,LOC107550496,LOC107591810,LOC107679192,LOC107711925 coding upstream 79978 12315716 ~ 12324419 (-)
atp5pb atp5f1,LOC107668113,LOC107731279,LOC107679218,LOC107711984 coding upstream 89047 12324785 ~ 12327978 (-)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458,LOC107668004,LOC107711923 coding upstream 128048 12363786 ~ 12425996 (-)
stk38a stk38,stk38a,LOC107669659,LOC107679274,LOC108265501 coding upstream 194687 12430425 ~ 12438331 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding downstream 30325 12159189 ~ 12198367 (-)
G63321 NA non-coding downstream 89294 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding downstream 93964 12131491 ~ 12134728 (-)
G63350 NA non-coding downstream 205939 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 208739 12019711 ~ 12019953 (-)
G63395 LOC107591850 non-coding upstream 66990 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 96718 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 100028 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 100376 12336114 ~ 12336823 (-)
G63408 NA non-coding upstream 101138 12336876 ~ 12337194 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 174162 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 449441 11778271 ~ 11779251 (-)
G63095 NA other downstream 612767 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 882704 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 1059219 11131670 ~ 11169473 (-)
G63385 NA other upstream 27956 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 106422 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 253459 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 749916 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 950129 13185867 ~ 13246130 (-)

Expression


Co-expression Network