LOC122350200 (LOC107731172,LOC107668058,LOC107549973)


Basic Information

Item Value
gene id LOC122350200
gene name LOC107731172,LOC107668058,LOC107549973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11797768 ~ 11801654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246509.1
ACTGAACTGCTGAAGGGGTGGAActgaaactattttattattttacaaaccaGCAAATAATGCTGATGAATCTGCAGAATCATTTTCAATAAGGGAAGCTGGTTAACCTGTTTCACAATTAATAATTCCTGTTTTCATGAACATCTCTTCAAGGTTTttgtaagacattttttaaGGCAGCTAGGCAGGGTGAAGCAAAACCACTCGTCTTCTAAACTAAAGGGAAGTGTGTAAGAAAGCATTTCTGTCACACTGATTCAGCCATGAATCTGATCTTGTGGGGGATTGTGCTCTTCGGGATCTATGTCCCACAGTCAGTTTCACAGATGGTGGactgtttttcatcatttacctTGTCCCGTGGGAAATGTAGTGGTCTTTTGGGTCAAGTTCAAAAAGACAAGTGTTGCTTGAACACCAACTACGGCTACCAAGAAGCAGATGGCATTTGTAAGTCCTGTGGGCGGCCGACGTGGTCTGAATGGTCTAGCTGGGGCGAGTGTACGGTGAGTTGTAGAGAGGGTGTCACCCAAAGGCGACGGTCTTGTTATGGCATTGGTGATTGTGCAGACCCTGAAAATCTAGGAACGCTTCAAACTAAACCATGCGTGAAAAGACCTTGCTGTCCAGTGGAAGGTGGCTGGTCAGAGTGGGGGAACTGGCAGTTGTGTTCAGTCACATGTGGCGATGGAATGAAAAAGAGGACAAGAACATGCTCTGAACCCATTCCAGAATGTGGGGGCTCCTGCAGCGGGGCAGCGGAAGAAGCCACCAACTGCTCCACTGAAATAATCTGTCCGACTCACGGCGGGTGGTCGAGTTGGGGAAGATGGGGTCCCTGCCCAGTTACTTGTCTTAAAGAAGGACGCAATCCTGAAAAAGAGGTTCGTACAAGGACATGCACCAACCCTCTTCCATCTGTGGTGCCACGTGGCAATAACTGCGAAGGCTCCAACACGGACACCCGCCCTTGCAGCGGACTACCTTTCTGCCCAGACGATGGAAACTGGGGCGCCTGGACAGGTTCCACGCCCTGCTCTGTGACGTGTGGAGTGGGCCAGCAGACTCAAAGACGGAAGTGTGATTCTCCTAAACCCGCACACGGTGGAAGACAGTGTCGAGGTGAAGACCAAAAAACTGGTGTCTGCGTCGTTGACGTGCCCTGTCCAGTTAATGGGATATGGTCCGAATGGGAAGAGTGGAGTAAATGTAAACAACCTTCAACTAAAACCATTAGATGTGCGAACAGAGAGGGAACCCGAAGGAGATTGAGAGACTGTATTGAAAGAAAACACGATGGAGCCCACTGTGAAGGAGAGATTGTTCAACATAGCAACTGCTATGACATTAACAACTGTCCAATGCAGGGCGTTTTAACAGAGTGGAGTGAGTGGAGTTATTGCAAACCTGACTGTGGGCAAGACTCTGAACAAACCAGAGAAAGAGTCTGTGTCGCTGACATCTCTAAATACCGGTTCCAAGACCGCAGTCTTTTTACAGGGTTTGCAATAATTAACTGTACAAATCTGGAAAACGACATAGAAAGAAAACCATGTCACAATGTTCCTGAGTGCAACAATAAGGAATGAAAAGAGGACCAGCTGCTTTACACAGTTACCAGCAACTGGAAGGACCTTAACATGCCAAGCTGTTCTATAATGAAATGTGATATTAACCAAAAAACGCTTGCTTTATTAGCCTTTGTGACATGAATCGGATTGACTGTTGATTGATGCACACCTCTGTAAGCTGCTTTGCTGCCACAATAAAgttgtaaagtaaaataaa
>XM_043246510.1
AAACCCTACACGGATCGGGTAAGTTCATTTTGCACGCAAGCTTGATTTCAGGTTTttgtaagacattttttaaGGCAGCTAGGCAGGGTGAAGCAAAACCACTCGTCTTCTAAACTAAAGGGAAGTGTGTAAGAAAGCATTTCTGTCACACTGATTCAGCCATGAATCTGATCTTGTGGGGGATTGTGCTCTTCGGGATCTATGTCCCACAGTCAGTTTCACAGATGGTGGactgtttttcatcatttacctTGTCCCGTGGGAAATGTAGTGGTCTTTTGGGTCAAGTTCAAAAAGACAAGTGTTGCTTGAACACCAACTACGGCTACCAAGAAGCAGATGGCATTTGTAAGTCCTGTGGGCGGCCGACGTGGTCTGAATGGTCTAGCTGGGGCGAGTGTACGGTGAGTTGTAGAGAGGGTGTCACCCAAAGGCGACGGTCTTGTTATGGCATTGGTGATTGTGCAGACCCTGAAAATCTAGGAACGCTTCAAACTAAACCATGCGTGAAAAGACCTTGCTGTCCAGTGGAAGGTGGCTGGTCAGAGTGGGGGAACTGGCAGTTGTGTTCAGTCACATGTGGCGATGGAATGAAAAAGAGGACAAGAACATGCTCTGAACCCATTCCAGAATGTGGGGGCTCCTGCAGCGGGGCAGCGGAAGAAGCCACCAACTGCTCCACTGAAATAATCTGTCCGACTCACGGCGGGTGGTCGAGTTGGGGAAGATGGGGTCCCTGCCCAGTTACTTGTCTTAAAGAAGGACGCAATCCTGAAAAAGAGGTTCGTACAAGGACATGCACCAACCCTCTTCCATCTGTGGTGCCACGTGGCAATAACTGCGAAGGCTCCAACACGGACACCCGCCCTTGCAGCGGACTACCTTTCTGCCCAGACGATGGAAACTGGGGCGCCTGGACAGGTTCCACGCCCTGCTCTGTGACGTGTGGAGTGGGCCAGCAGACTCAAAGACGGAAGTGTGATTCTCCTAAACCCGCACACGGTGGAAGACAGTGTCGAGGTGAAGACCAAAAAACTGGTGTCTGCGTCGTTGACGTGCCCTGTCCAGTTAATGGGATATGGTCCGAATGGGAAGAGTGGAGTAAATGTAAACAACCTTCAACTAAAACCATTAGATGTGCGAACAGAGAGGGAACCCGAAGGAGATTGAGAGACTGTATTGAAAGAAAACACGATGGAGCCCACTGTGAAGGAGAGATTGTTCAACATAGCAACTGCTATGACATTAACAACTGTCCAATGCAGGGCGTTTTAACAGAGTGGAGTGAGTGGAGTTATTGCAAACCTGACTGTGGGCAAGACTCTGAACAAACCAGAGAAAGAGTCTGTGTCGCTGACATCTCTAAATACCGGTTCCAAGACCGCAGTCTTTTTACAGGGTTTGCAATAATTAACTGTACAAATCTGGAAAACGACATAGAAAGAAAACCATGTCACAATGTTCCTGAGTGCAACAATAAGGAATGAAAAGAGGACCAGCTGCTTTACACAGTTACCAGCAACTGGAAGGACCTTAACATGCCAAGCTGTTCTATAATGAAATGTGATATTAACCAAAAAACGCTTGCTTTATTAGCCTTTGTGACATGAATCGGATTGACTGTTGATTGATGCACACCTCTGTAAGCTGCTTTGCTGCCACAATAAAgttgtaaagtaaaataaa
>XM_043246512.1
AAAACCCTACACGGATCGGGTTTttgtaagacattttttaaGGCAGCTAGGCAGGGTGAAGCAAAACCACTCGTCTTCTAAACTAAAGGGAAGTGTGTAAGAAAGCATTTCTGTCACACTGATTCAGCCATGAATCTGATCTTGTGGGGGATTGTGCTCTTCGGGATCTATGTCCCACAGTCAGTTTCACAGATGGTGGactgtttttcatcatttacctTGTCCCGTGGGAAATGTAGTGGTCTTTTGGGTCAAGTTCAAAAAGACAAGTGTTGCTTGAACACCAACTACGGCTACCAAGAAGCAGATGGCATTTGTAAGTCCTGTGGGCGGCCGACGTGGTCTGAATGGTCTAGCTGGGGCGAGTGTACGGTGAGTTGTAGAGAGGGTGTCACCCAAAGGCGACGGTCTTGTTATGGCATTGGTGATTGTGCAGACCCTGAAAATCTAGGAACGCTTCAAACTAAACCATGCGTGAAAAGACCTTGCTGTCCAGTGGAAGGTGGCTGGTCAGAGTGGGGGAACTGGCAGTTGTGTTCAGTCACATGTGGCGATGGAATGAAAAAGAGGACAAGAACATGCTCTGAACCCATTCCAGAATGTGGGGGCTCCTGCAGCGGGGCAGCGGAAGAAGCCACCAACTGCTCCACTGAAATAATCTGTCCGACTCACGGCGGGTGGTCGAGTTGGGGAAGATGGGGTCCCTGCCCAGTTACTTGTCTTAAAGAAGGACGCAATCCTGAAAAAGAGGTTCGTACAAGGACATGCACCAACCCTCTTCCATCTGTGGTGCCACGTGGCAATAACTGCGAAGGCTCCAACACGGACACCCGCCCTTGCAGCGGACTACCTTTCTGCCCAGACGATGGAAACTGGGGCGCCTGGACAGGTTCCACGCCCTGCTCTGTGACGTGTGGAGTGGGCCAGCAGACTCAAAGACGGAAGTGTGATTCTCCTAAACCCGCACACGGTGGAAGACAGTGTCGAGGTGAAGACCAAAAAACTGGTGTCTGCGTCGTTGACGTGCCCTGTCCAGTTAATGGGATATGGTCCGAATGGGAAGAGTGGAGTAAATGTAAACAACCTTCAACTAAAACCATTAGATGTGCGAACAGAGAGGGAACCCGAAGGAGATTGAGAGACTGTATTGAAAGAAAACACGATGGAGCCCACTGTGAAGGAGAGATTGTTCAACATAGCAACTGCTATGACATTAACAACTGTCCAATGCAGGGCGTTTTAACAGAGTGGAGTGAGTGGAGTTATTGCAAACCTGACTGTGGGCAAGACTCTGAACAAACCAGAGAAAGAGTCTGTGTCGCTGACATCTCTAAATACCGGTTCCAAGACCGCAGTCTTTTTACAGGGTTTGCAATAATTAACTGTACAAATCTGGAAAACGACATAGAAAGAAAACCATGTCACAATGTTCCTGAGTGCAACAATAAGGAATGAAAAGAGGACCAGCTGCTTTACACAGTTACCAGCAACTGGAAGGACCTTAACATGCCAAGCTGTTCTATAATGAAATGTGATATTAACCAAAAAACGCTTGCTTTATTAGCCTTTGTGACATGAATCGGATTGACTGTTGATTGATGCACACCTCTGTAAGCTGCTTTGCTGCCACAATAAAgttgtaaagtaaaataaa

Function

NR:

description
PREDICTED: properdin-like isoform X2

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG:

id description
K15412 CFP; complement factor properdin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246509.1 True 1788 mRNA 0.46 11 11797768 11801377
XM_043246510.1 False 1686 mRNA 0.47 12 11797768 11801653
XM_043246512.1 False 1654 mRNA 0.48 12 11797768 11801654

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_1 NA coding downstream 566 11797130 ~ 11797202 (-)
slc38a5b slc38a5b,slc38a5,LOC107668060,LOC107549975,LOC107731265,LOC107745748,LOC107678718,LOC107549617 coding downstream 33118 11749596 ~ 11764650 (-)
wasb LOC107731288,LOC107668059,LOC107745750,LOC107549977,LOC107678704,LOC107549603 coding downstream 49887 11743139 ~ 11747881 (-)
gpr173 gpr173,LOC107731146,LOC107678674,LOC107549585,LOC107549979,LOC107745752 coding downstream 114143 11675274 ~ 11683625 (-)
nol4la nol4la,LOC107549982,LOC107731219,LOC107745834,LOC107680239,LOC107550513,LOC107668103,LOC108412512,LOC103039117 coding downstream 182497 11579162 ~ 11615271 (-)
inavaa si:ch211-163l21.4,LOC107731290,LOC107745811,LOC107678807,LOC107667997 coding upstream 26468 11828122 ~ 11837390 (-)
zgc:195245 zgc:195245,LOC107668117,LOC107549966,LOC107731284 coding upstream 36639 11838293 ~ 11840601 (-)
c8h1orf194 LOC107731283,LOC107668109,LOC107549965 coding upstream 39527 11841181 ~ 11842852 (-)
lhfpl5b lhfpl5b,LOC107591869,LOC107745833,LOC107731128 coding upstream 82084 11883738 ~ 11891283 (-)
dclre1b LOC107731274,LOC107668110,LOC107550475,LOC107712006,LOC107678930 coding upstream 169087 11970741 ~ 11974829 (-)
G63134 si:dkey-16n15.6,LOC107667993,LOC107549944,LOC108442380,LOC105898899 non-coding downstream 130288 11667166 ~ 11667480 (-)
G63127 NA non-coding downstream 132994 11663435 ~ 11664774 (-)
G63120 NA non-coding downstream 145864 11648509 ~ 11651904 (-)
LOC122350252 NA non-coding downstream 176563 11620447 ~ 11621205 (-)
G63076 NA non-coding downstream 236135 11560987 ~ 11561633 (-)
G63254 LOC106565120 non-coding upstream 19630 11821284 ~ 11823244 (-)
G63304 LOC107549947,LOC107731153,LOC107668018,LOC107591857,LOC107745734 non-coding upstream 54091 11855745 ~ 11856062 (-)
G63344 NA non-coding upstream 215072 12016726 ~ 12017351 (-)
G63347 NA non-coding upstream 218057 12019711 ~ 12019953 (-)
G63350 NA non-coding upstream 220861 12022515 ~ 12022753 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 18517 11778271 ~ 11779251 (-)
G63095 NA other downstream 181843 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 451780 11284354 ~ 11345988 (-)
smim1 smim1,LOC107668050 other downstream 628295 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 666530 11096140 ~ 11131238 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 249703 12051357 ~ 12054530 (-)
G63385 NA other upstream 462040 12263694 ~ 12264533 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 540506 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 687543 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 1184000 12985654 ~ 13083372 (-)

Expression


Co-expression Network