gnat2 (gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114)


Basic Information

Item Value
gene id gnat2
gene name gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12276107 ~ 12282715 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246541.1
CAGACGACGAGATGGGTAGCGGAGCGAGCGCAGAGGATAAGGAAATGGCCAAGAAGTCCAAAGAGCTGGAAAAACAGCTCCAGGAAGATGCTGATAAAGAAGCAAAAACCGTCAAACTTCTGCTGCTGGGTGCTGGTGAGTCAGGGAAGAGCACCATTGTAAAACAGATGAAAATTCTCCATCAAGGTGGTTATACAAAAGAAGAACAAATGGAGTTTCGATCTATTATTTTTGGCAACATCCTGCAATCTGCTCTGGCCATCATCAGAGGCATGGAGATGCTGGATATAAACTTTGGGTCACCAGCAGCACAGGAGGATGGTCAGAAGCTCCAGAACTTGTCTGACTCCATTGAGGAGGGATCCATGCCTCCAGAGCTGGCCGATGTTATCAAAAGGCTATGGAAGGATTCGGGTGTGCAGGCCTCGTTTGATAGAGCTGCTGAGTACCAGCTGAACGACTCTGCTGGATACTACTTGAGCGAAATGGACAGAATCTGCAAACCTGACTACCTCCCCACTGAGCAGGATGTGCTGAGATCTCGAGTCAAGACTACTGGTATCATTGAGGAGCAGTTCTCCTGCAAAGAGCTtcacttcagGATGTTTGATGTGGGTGGCCAGAGGTCAGAGAGGAAGAAGTGGATTCATTGTTTCGAAGGTGTGACTTGCATCATCTTCTGTGGAGCCCTGAGCGCTTATGACATGGTGTTGGTAGAAGATGATGAAGTGAACCGCATGCATGAGAGTCTCCATCTCTTCAACAGTATCTGCAACCACAGGTTCTTCGCCACAACTTCCATTGTGCTTTTCCTCAACAAGAAAGATCTTTTCCAGGAGAAGATCAAGAAAGTCCACCTGAGTATCTGTTTTCCTGAATATGACGGTCCAAACACATACGAAGATGCCAGCAACTACATCAAGACTCAATTTAATGATCTGAACATGAAGAAGGGAGTGAAAGAGATCTATGCACACATGACCTGCGCCACAGACACAAAGAATGTCGAGATCGTGTTTAACGCCGTGACAGACATTATCATAAAAGAAAACCTTAAGGATTGCGGTCTGTTCTAAATACGATCTACTTTTTCAAAGGTatgtttcctaaaaaaaaacaaagcagattCTTACTGTCTACACTGGACacaaaaggaacattttaaGTAGATAACTCAAAAACACCTTCAGTTGATGAAAgctccatttttattttttactatctATACTTCTAACTGTGGTAGTAAACAagcattttgtaatatttgactttttcagATCTTTCTGCCCCATCCCCACCAGCATGATTGGATTGACTCTGGTGAAGTTGCCACAATAACAAAAGAACATCCACAGGTGGCGTAAAGGTGAACTCTACAGCAAGCGGTCAAGTGTGGTCAGCGGATCCCCGGCCAAAGAACAACCTCAACAACTTTACCAAACCTCAGAGACTAGTTCCAGATTAGACTAATGGCCTCTGCCCTGTCAAGGGACtctaaaacatttccaaatacaACTAGTAGAGACAACGAGAGAAGGATTACCAAAGGAACGGGACTTTTGATGCTATGAGTTATTGATGCTTGTAGAGAAGCTTCCTCttgatgtgttttaatgttaaacctATAGAGGTTTGACggttagatgtttttttttttcttcccccatTCATttccagaaaaagaaaagtaaatttAATTGCTCTATTAAAAAGATCGAAGTGGGACCCCGTCAGATCCCATGGTAGCAATTAGAAACATTCTTATATGTACAGCATCTGGTTTCCTTTGAGAGAGTTAAAACTTGCATATCAGCAAGACGTGATTGTATGAATTCAGCCAGCTCACACAATATATGAAAGATGTTTCTTTTTCAGCCCCAAATACAGTAGGGCagtatgttttgtaaataagagtaggaaaaaaaaatccgtTTCAAAAAAggttctatataaaatatatatggcgaaataaatatatatatttatgatacaGTATTACAGTAACAAGTGAAAATTCTAGAATGGCTGTTGCTTTGTTTAAAACCTGAGGTCTGAATTTGTGGAGATGTTTTGGAATGTAAATGTAGGCACATGAAATAAAGACTTGCATCAATTTCACTGCTTGCTGGTGTTGAATTAATATTA

Function

symbol description
gnat2 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within detection of light stimulus involved in visual perception. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in photoreceptor inner segment and photoreceptor outer segment. Is expressed in pineal complex and visual system. Used to study achromatopsia and cone-rod dystrophy. Human ortholog(s) of this gene implicated in achromatopsia 4 and color blindness. Orthologous to several human genes including GNAT2 (G protein subunit alpha transducin 2).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(t) subunit alpha-2

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste biological_process
GO:0001750 photoreceptor outer segment cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG:

id description
K04631 GNAT1_2; guanine nucleotide-binding protein G(t) subunit alpha 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246541.1 True 2145 mRNA 0.41 8 12276107 12282715

Neighbor

gene id symbol gene type direction distance location
amigo1 amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117 coding downstream 40369 12228692 ~ 12235738 (-)
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding downstream 62538 12199611 ~ 12213569 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding downstream 78872 12190007 ~ 12197235 (-)
ahcyl1 ahcyl1,LOC107731197,LOC107668032,LOC107591817,LOC107679038 coding downstream 86622 12172189 ~ 12189485 (-)
hspa1b si:ch211-199o1.2,LOC107668030,LOC108442126,LOC104926754 coding downstream 104737 12168887 ~ 12171370 (-)
eps8l3b LOC107731156,LOC107668036,LOC107550496,LOC107591810,LOC107679192,LOC107711925 coding upstream 33001 12315716 ~ 12324419 (-)
atp5pb atp5f1,LOC107668113,LOC107731279,LOC107679218,LOC107711984 coding upstream 42070 12324785 ~ 12327978 (-)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458,LOC107668004,LOC107711923 coding upstream 81071 12363786 ~ 12425996 (-)
stk38a stk38,stk38a,LOC107669659,LOC107679274,LOC108265501 coding upstream 147710 12430425 ~ 12438331 (-)
sema3ga sema3ga,LOC107731285,LOC107550503,LOC107669661,LOC107591802,LOC107711922,LOC108442245,LOC108265594 coding upstream 180322 12463037 ~ 12478692 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding downstream 77740 12159189 ~ 12198367 (-)
G63321 NA non-coding downstream 136709 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding downstream 141379 12131491 ~ 12134728 (-)
G63350 NA non-coding downstream 253354 12022515 ~ 12022753 (-)
G63347 NA non-coding downstream 256154 12019711 ~ 12019953 (-)
G63395 LOC107591850 non-coding upstream 20013 12302728 ~ 12304329 (-)
G63404 NA non-coding upstream 49741 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 53051 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 53399 12336114 ~ 12336823 (-)
G63408 NA non-coding upstream 54161 12336876 ~ 12337194 (-)
G63385 NA other downstream 11574 12263694 ~ 12264533 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 221577 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 496856 11778271 ~ 11779251 (-)
G63095 NA other downstream 660182 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 930119 11284354 ~ 11345988 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 59445 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 206482 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 702939 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 903152 13185867 ~ 13246130 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 1433913 13716628 ~ 13720514 (-)

Expression


Co-expression Network