atp5pb (atp5f1,LOC107668113,LOC107731279,LOC107679218,LOC107711984)


Basic Information

Item Value
gene id atp5pb
gene name atp5f1,LOC107668113,LOC107731279,LOC107679218,LOC107711984
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12324785 ~ 12327978 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246557.1
tctcgCGATAATCTGAAGCGAGAGTTTCTCATCCTTGGTCTAGAAGGGCACAGAGAGCCCGGTACAAAGACGTTTTGGCCAGGGATCCTGACATTGACCCGTTAAAACATGTTGTCAAGACTGGTGCTCGTTTCAGGTCATACCCTGAAAAACAGCGGGTCCTTTGGTGCTTGTCTGGTTCAGGCCTCCCGTTCCTTTCACCAGTCCTCCCAGAGTCTTGCACCAGTTCCCCCTCTGCCCGAGAAGGGTGGAAAGGTCAGGCATGGCATCTTTCCGGAGGAGCTTTTCACACTGTTGTACCCCAAGACCGGTGTGACAGGGCCTTATATGCTGGGCACTGGGCTCCTCCTGTACATGCTGTCTAAGGAAATCTATATAATCAATCATGAGACCGTTGCCGCTGCATCAATCGGTGCAGTCATCATTTACGGCATCAAGAAGTTTGGGCCCAGTGTGGCCTCCTTCGCTGACAAATTAAATGAGGATAAAGTGGCAAAGGCTCAGGAAGTGAAGGATCAGGCCATGTCTAGCCTAACTCAAGGCATTGAGGATGAGAAGAAAGAGCAGTGGAGAGTGGAAGGAAGACACCTGCTCTTCGATGCCAAGAGGAACAATGTGGCTATGCTGCTGGAGACCAATTACAGGGAGCGGCTGCACATGGTGACCAATGAGGTGAAGAAGAGGCTAGACTACCAGGTGGAGCTTCAGAACCTGCACCGCCGCATGGAGCAGGAGCACATGGTGAACTGGGTGGAGCAGAGCGTCGTCAACAGCATCACCCCACAGCAGGAGAAGGAAAGCATCGCCAAGTGCATTGCAGATCTGAAGACCCTGTCCAAGACCACCCGGGCTACAGTATAGGTCTCTGTCAATGTCTGCACTAAAGCCTCCAGTTTTCATTCTAAATGAGCCCTTTCCTTGTGAACATGCCAGTCTGGCCGTGTCTTCAAACGTGTACATACCCgtattaaataaaagatttggTTATTCACTAAA

Function

symbol description
atp5f1 F-type H+-transporting ATPase subunit b

NR:

description
PREDICTED: ATP synthase F(0) complex subunit B1, mitochondrial

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function

KEGG:

id description
K02127 ATPeF0B, ATP5F1, ATP4; F-type H+-transporting ATPase subunit b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246557.1 True 996 mRNA 0.51 7 12324785 12327978

Neighbor

gene id symbol gene type direction distance location
eps8l3b LOC107731156,LOC107668036,LOC107550496,LOC107591810,LOC107679192,LOC107711925 coding downstream 366 12315716 ~ 12324419 (-)
gnat2 gnat2,LOC107668040,LOC107731158,LOC107550493,LOC107679180,LOC107591823,LOC108442114 coding downstream 42070 12276107 ~ 12282715 (-)
amigo1 amigo1,LOC107731278,LOC107550491,LOC107668119,LOC107711992,LOC107591818,LOC107679117 coding downstream 89047 12228692 ~ 12235738 (-)
sort1b sort1b,LOC107550487,LOC107668073,LOC107731125,LOC107591814,LOC107679020,LOC107711994 coding downstream 111216 12199611 ~ 12213569 (-)
nfyal LOC107731273,LOC107711997,LOC107591820,LOC107668092,LOC108265435,LOC107679058 coding downstream 127550 12190007 ~ 12197235 (-)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458,LOC107668004,LOC107711923 coding upstream 35808 12363786 ~ 12425996 (-)
stk38a stk38,stk38a,LOC107669659,LOC107679274,LOC108265501 coding upstream 102447 12430425 ~ 12438331 (-)
sema3ga sema3ga,LOC107731285,LOC107550503,LOC107669661,LOC107591802,LOC107711922,LOC108442245,LOC108265594 coding upstream 135059 12463037 ~ 12478692 (-)
tspy LOC107550504,LOC107731226,LOC107711967,LOC107679295,LOC107591801 coding upstream 156473 12484451 ~ 12489040 (-)
suv39h1b suv39h1,suv39h1b,LOC107550505,LOC107679310,LOC107591797,LOC107669636,LOC108265881,LOC108442234 coding upstream 183473 12511451 ~ 12517641 (-)
G63395 LOC107591850 non-coding downstream 20456 12302728 ~ 12304329 (-)
G63329 LOC107711999,LOC107550488,LOC107668094,LOC107731126 non-coding downstream 126418 12159189 ~ 12198367 (-)
G63321 NA non-coding downstream 185387 12104578 ~ 12139398 (-)
G63316 slc6a17,LOC107668054,LOC107731213,LOC107712000,LOC107678997 non-coding downstream 190057 12131491 ~ 12134728 (-)
G63350 NA non-coding downstream 302032 12022515 ~ 12022753 (-)
G63404 NA non-coding upstream 4478 12332456 ~ 12334605 (-)
G63406 NA non-coding upstream 7788 12335766 ~ 12336021 (-)
G63407 NA non-coding upstream 8136 12336114 ~ 12336823 (-)
G63408 NA non-coding upstream 8898 12336876 ~ 12337194 (-)
G63486 NA non-coding upstream 128070 12456048 ~ 12458857 (-)
G63385 NA other downstream 60252 12263694 ~ 12264533 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 270255 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 545534 11778271 ~ 11779251 (-)
G63095 NA other downstream 708860 11562278 ~ 11615925 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other downstream 978797 11284354 ~ 11345988 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other upstream 14182 12342160 ~ 12363104 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other upstream 161219 12489197 ~ 12504153 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 657676 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 857889 13185867 ~ 13246130 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 1388650 13716628 ~ 13720514 (-)

Expression


Co-expression Network