Item | Value |
---|---|
gene id | G30688 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 10436230 ~ 10447737 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU34700 | True | 530 | lncRNA | 0.42 | 2 | 10436230 | 10447737 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_10434104_10435287 | PTF1A | coding | upstream | 661 | 10431833 ~ 10435569 (+) |
CI01000004_10376389_10423302 | DLGAP1A, DLGAP1 | coding | upstream | 12928 | 10376389 ~ 10423302 (+) |
CI01000004_10169407_10212947 | CDH18 | coding | upstream | 223041 | 10169407 ~ 10213189 (+) |
CI01000004_10058538_10090881 | CDH12A | coding | upstream | 345181 | 10058538 ~ 10091049 (+) |
CI01000004_09980195_09995816 | CDH10A | coding | upstream | 440337 | 9980195 ~ 9995893 (+) |
CI01000004_10514814_10550774 | NA | coding | downstream | 67077 | 10514814 ~ 10550920 (+) |
CI01000004_10582152_10586349 | HTR5AB, HTR5A, HTR5AA | coding | downstream | 134384 | 10582121 ~ 10586553 (+) |
CI01000004_10610634_10613290 | ENG2B | coding | downstream | 162043 | 10609780 ~ 10613630 (+) |
CI01000004_10630265_10647904 | NA | coding | downstream | 182528 | 10630265 ~ 10647904 (+) |
CI01000004_10683400_10692323 | NA | coding | downstream | 235663 | 10683400 ~ 10692565 (+) |
G30681 | NA | non-coding | upstream | 91252 | 10208466 ~ 10344978 (+) |
G30515 | NA | non-coding | upstream | 529684 | 9906238 ~ 9906546 (+) |
G30505 | NA | non-coding | upstream | 546474 | 9889529 ~ 9889756 (+) |
G30447 | NA | non-coding | upstream | 620145 | 9815811 ~ 9816085 (+) |
G30780 | NA | non-coding | downstream | 5865 | 10453602 ~ 10454260 (+) |
G30787 | NA | non-coding | downstream | 27013 | 10474750 ~ 10474951 (+) |
G30689 | NA | non-coding | downstream | 246180 | 10693917 ~ 10697207 (+) |
G30839 | NA | non-coding | downstream | 253487 | 10701224 ~ 10701436 (+) |
G30678 | NA | non-coding | downstream | 284650 | 10732387 ~ 10736123 (+) |
CI01000004_08976512_08980033 | TTPA | other | upstream | 1455246 | 8976254 ~ 8980984 (+) |
G28859 | NA | other | upstream | 1836627 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 1985003 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 2779847 | 7654234 ~ 7656383 (+) |
CI01000004_06571261_06572539 | SEP15 | other | upstream | 3861809 | 6570771 ~ 6572667 (+) |
G30797 | NA | other | downstream | 49639 | 10497376 ~ 10497788 (+) |
G31710 | NA | other | downstream | 1189514 | 11637251 ~ 11642400 (+) |
CI01000004_11666900_11667179 | NA | other | downstream | 1217036 | 11666900 ~ 11667659 (+) |
G31865 | NA | other | downstream | 1744393 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 2195017 | 12646838 ~ 12652570 (+) |