chmp7 (chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414,LOC107553169)


Basic Information

Item Value
gene id chmp7
gene name chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414,LOC107553169
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21337267 ~ 21344907 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246600.1
AAAGAgcgctgttgttgttgttgttgtcttccGGGTGAGCCGCAGTCGTCTTCGTCGTGCTCTTAAACCGTGACACGGAGCCGGTCGCCTTCCTCCCTCCGCCGCCGAAGATTCAAGCAGCATGCGGGTCCCCGCCGATGGATGTCTCGACAAACACTGAGGAGATCTTAGCTGATCCAGCTGCTTGAACTCGAGCACAATGTCGGTGGAGAAGAGGTCTTCGTGTTTCCCGTCGGACTGGGAGGACGACGAGCGAATGGCTTTCTTGTTCTCTGCCTTCAAAGAGAACCGAGATGTTGACAGCACGGACTGGGATGGGAAGATCGACTTCTGGAGCCCTCTGATCGCTGATCAGTGCCGGCGGCGCGGGACGGTGTGCGTGAGTCTGCAGGAGCTGAACGAGAGCTTCAGGAGGAAGGGCTGCGTTCCTCTGGGCTTGAGCACGGTTCTTCAGAGCATGGTTAGAAGCGGGAAGGTGCAGAAGGAATCGGACTTCGCTGCAAACGTGGACTCGGGCTGGTTGTCGTGGGGGGTCGGACTCTTGCTGGTTCGACCTCTGAAGTGGACTCTGTCGGCTCTGCTGGGCAGCGGCAGGGTCCCGCTGGAGGAGTCGTTTGTTGTGATTGACCTGGTCAAAGAAAAGGCTGCGGCGCTCCTGGCGACGTATCGGGCTTCTCCTTTAGCAGCACATTCTCTGTTGTCCTTCCAAGAGCTGCGTGCTCTCTCCTCTCACATCTGTCCCGATGAAAGCTCGCTCTGCCTGGCCCTGCTGCAgctgcagagagagaaacacgTCACCGTCTCGCTCCATGAAGGAGAGAAGCTGGTGAAATTTAGTCAGGCAGGACAAGGCCGCGTATCCCCCGTCAGCGAGGTGGACCTGGGCATCTATCAGCTCCAGCGCAGCGAGAAGCTTCTGGAGGAGAGGGTGGAGGCGTTGGGACAGGAAGCAGAAAAGTGCAAGCAGCAGGCAAAATCGCTGCTTCGAGAGGGGAAGAAATCTCAGGCCCTGAGGTGTTTGCGCGGGAGCAAGCGGGTGGAGAAGAAAGCGGACCGTCTGTTCGCTCAGCTCGAGACGGTGAAGGGGATCCTGGACAGAATAGCCAACTCCCAAACCGACCGGCTGGTGATGCAGGCATACCAGGCAGGTGTGGCGGCTCTGAGGATCTCCTTGAAGGGTGTGACGGTGGAGCGAGCAGAAAACCTGGTTGATCAGATACAGGAGCTATGCGACACTCAGGATGAAGTCAGCCAGACTCTCGCCAGTGGAGCGCCGGATTCTGGTGAGGATtcagaggagctggaggaggagctgAAGTCATTATTGGAGAAAGCCGCCCCAGATAACGACGTGCTCCCGGTGGTCCCAACGCATCCTTTTTCTCCTCCAAGGAAAACGGGTATCCTGGATGCTGACTTTGTCCAGTCTCTGCCCTCTGTGCCTGATTCCGGTCTAGGCATCACAGACGAGGAACTGGACAGAGAACTAAGTCGACTTTCAGTCTCTGACACAGCTCACAGAAGGCCGGAGGCGGCGCAGTGACCGAGCGTTCAGCACAAGCAGCCACTAAAATGGGTTAAACGCTGTCCACTAAAGAAAGCCATCAGATACAGTACTCGTGTGTCCTTGCATTGTAATAAGTCCTATCAAGTCTTTATGAAAAGCCCTTATTCATGTTTGTAATGGCatgtctatttttgttttttaaagatagtTTTAAGAGTGGCCTTTTTGAGTTTGTAAAGTCTGTACAATGTAATATTCtaataaaactacaaattatGATGACAAATAGAGAA

Function

symbol description
chmp7 Predicted to be involved in several processes, including exit from mitosis; late endosome to vacuole transport via multivesicular body sorting pathway; and nuclear membrane reassembly. Predicted to act upstream of or within protein transport and vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP7 (charged multivesicular body protein 7).

NR:

description
charged multivesicular body protein 7-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0045324 late endosome to vacuole transport biological_process
GO:0000815 ESCRT III complex cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K15053 CHMP7; charged multivesicular body protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246600.1 True 1800 mRNA 0.54 11 21337267 21344907

Neighbor

gene id symbol gene type direction distance location
LOC122351138 NA coding upstream 6107 21331042 ~ 21331160 (+)
LOC122351136 NA coding upstream 8463 21328686 ~ 21328804 (+)
LOC122351127 NA coding upstream 10803 21326346 ~ 21326464 (+)
lgi3 lgi3,LOC107698096,LOC107678470,LOC107559454,LOC107553170,LOC108426696 coding upstream 12063 21313704 ~ 21325204 (+)
fgfr1a fgfr1a,LOC107710851,LOC107698118,LOC107553171,LOC107678428,LOC107721100 coding upstream 31488 21270648 ~ 21305779 (+)
entpd4 entpd4,LOC107698120,LOC107710847,LOC107678413,LOC107747713 coding downstream 467 21345374 ~ 21355724 (+)
LOC122350060 LOC107710843,LOC107665201,LOC107553167,LOC107574349,LOC107562645 coding downstream 195140 21540047 ~ 21625933 (+)
egr3 egr3,LOC107716610,LOC107562644,LOC107678405,LOC107665203,LOC107710840,LOC106579855 coding downstream 292978 21637885 ~ 21644585 (+)
bin3 bin3,LOC107678406,LOC107710841,LOC107553165,LOC107665194 coding downstream 303078 21647985 ~ 21697626 (+)
ubl4a zgc:56596,ubl4a,LOC107553161,LOC107562643,LOC107665196,LOC107678422 coding downstream 410123 21755030 ~ 21757633 (+)
G65769 NA non-coding upstream 311429 21025397 ~ 21025838 (+)
G65768 NA non-coding upstream 317731 21019292 ~ 21019536 (+)
G65754 NA non-coding upstream 393888 20939422 ~ 20943379 (+)
LOC122350852 NA non-coding upstream 548927 20785366 ~ 20788340 (+)
G65552 NA non-coding upstream 578023 20725202 ~ 20759244 (+)
G65913 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 149905 21494812 ~ 21495538 (+)
G65914 LOC107710826,LOC107665200,LOC107553133,LOC107575786 non-coding downstream 151519 21496426 ~ 21509076 (+)
G65944 NA non-coding downstream 291214 21636121 ~ 21698404 (+)
G65951 NA non-coding downstream 385667 21730574 ~ 21731140 (+)
G65953 NA non-coding downstream 389855 21734762 ~ 21735247 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other upstream 132921 21202448 ~ 21204346 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other upstream 365227 20958600 ~ 20972040 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other upstream 905435 20423281 ~ 20431832 (+)
timm17b timm17b,LOC107722912 other upstream 1197903 20135119 ~ 20139364 (+)
rfk rfk,LOC107740987,LOC107723557 other upstream 1303660 20030034 ~ 20033607 (+)
slc25a37 slc25a37,LOC107710846,LOC107747712,LOC107559458,LOC107678377 other downstream 14330 21359237 ~ 21374625 (+)
LOC122350761 rhobtb2,LOC107553166,LOC107678456,LOC107718938,LOC107665202,LOC107710844 other downstream 125083 21469990 ~ 21538986 (+)
b2ml LOC107562648,LOC107710837,LOC107665198,LOC107728367 other downstream 406855 21751762 ~ 21754720 (+)
G65992 LOC107553157,LOC107661339 other downstream 594239 21939146 ~ 21940924 (+)
G65995 NA other downstream 604981 21949888 ~ 21961845 (+)

Expression


Co-expression Network