LOC122350258 (LOC107757082,LOC107757083,LOC107752574,LOC107757080,LOC107678397,LOC107575601,LOC107703982,LOC107752571)


Basic Information

Item Value
gene id LOC122350258
gene name LOC107757082,LOC107757083,LOC107752574,LOC107757080,LOC107678397,LOC107575601,LOC107703982,LOC107752571
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22748545 ~ 22756185 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246601.1
ATGCTTCTCAGtagcatttacattttgattgtaGGCTTTActaattgtttctttttcaaaatttcTTGGTCAACGTCAGACTTCAGTTTGGAGGGAGATTACTTATTGGGTGGCCTTTTCCCTTTACATGAAATTGAACATGAAACGGCCCTATTTTCTGCTGAGACTACCAAATGTTTCAGGCACATTTCCTCAAAATCTGGATATCAGATGCTGCAAGTAATGAGGTTTGCTGTTGAAGAGATTAATAACTCCACCAGTCTTTTGCCTAATGTTTCTCTGGGCTATGAAATCTTTGACTACTGTTCTAATACAAAAAATTTCAACTCAGCCTTGAGTTTCATCTCCAAGAATGGCTCAATTAAACCTAAAGAGAAACATAACAACTATCAGCCTAAAGTGATTGCTTTAACAGGGCCATATGGAAGCACAAGTAGTATGACTATTGCACCACTGTTTACAATGGACCTTATACCAATGGTGAATTATGGAGCTTCTACCTCTGCGTTAAGCAATAAACTTCAGTATCCTTCCTTTGTAAGAACAATGCCTAGCAACAAAGACCTGGTAGAGATGATTATTCACATCATACAGTGGTTTGGATGGAACTGGGTTGCCTTTATTGGTAGTCAAGATGATTACAGCACAGACGGACTAAAGCAGTTTaacaagtatataaataatacaggcATTTGTTTGGCCTATCAAGAGGGACTAAGTCTAAAGGCAAACTACAGTCAAACGCTTAAAAATATTGATAAGCTCAACATCAATGTCATTGTAGTTTTTGCTTTGCCACAATATGCAACCAAATTCATCAAAGCAGCCATAGCAAACAACATCCAGGACAAAGTATGGATTGCAAGTAATGCATGGGCTATGAACCAACAGATTCCAAGAGAACCAGGAATTGGAAAAATTGGCACAGTTATTGGTATTGCAGAGAGACTCTTGTCATTGCCTGGATTTAATGAATTTATCTATAAAGACAGAGGAACAACTGATGTTCGCCATAATGATAGCGATGAGACTGGCATCCTGGGAAAGAGAAATACTTGTAATCAAGTTTGTGAATACTGCTCTTTGTTGACTGCAGAGgacattataaatgaaaatccTACACTCTCCTTTTCCATCTATTCTGCCATATATACCATAGCTCATGCATTACATAGAGTTCTGCAGTGCGACATGAATGAATGCCACAAAAATACAATGGCCAAGCCATACATGCTTCTGGAGGAGATAAAGAAGTTGGATTTTCCACTCGATGGCCGTCAGGTGAAATACGATAAAAATTATGATCCAACCATCAGTTATGCAGTTGTGCTCTGGCGCACTGATGTGAATCCTCCACAGTTTGAGGTGGTTGGCACATATGATACACATCCAGAAATTACTTTTAGGATCAACAACTCTCGTCTTCGCTGGCATAACAATAGTTCaGTTCCTTTCTCAAATTGCTCTGTTGAGTGTAAGGCGGGATATTCAAGGCGGCATGAAGGCTTTCATAGTTGCTGTTTTTCATGTGAAAAATGTCCACCTAACagctatttaaatttttcacgGGACCCCTACACCTGTTTTCCATGTGCAGAGAGTGAATGGTCTGATGAGGGCAGCACGACATGTAAGACTCGTTCTGTTGTCTATGTACAGTTCACAGAAATTCCCTCCATTATTGTTATGATTTCTACTGTATTCTTGATTTTTCTCCTTATtgctgtattttgcatttttgcctACAATTACGACACACCAGTGGTGAAGTCTGCTGGTGGCAGCATGTGTTTCCTCATGTTGACTAGTTTGATTTTTTCTAGTGTAAGTGTGttctttttctttggaaaaCCCACATTTGTATTTTGCCTTCTgagaaatgtcatatttacatttttcttcacTGTCTGTATTTCGTGTTTGACTGTCCGTTCTTTTcaaattgtttgtgtttttaaaatggctgCTCAGTTCCCGAAAGTGCACAGCCTTTGGGTAAAACACAATGGCCAGTGGCTCTTCGTTGCATTTgcttctttcattcatttaatctcATGTGTGATATGGATGACTGTCAATCCTGTCAACGCCATTGCTGACTCGTGGTCTTTTAAAGACCAAATTCTGCTCATCTGTGAAAGGGGGAACAATGCAACCTTCAGCATAGTCGTGTTTTTAAGTTGGGCTCTTGGTTTCTTGTGTCTCCTGTTTTCTTACATGGGAAGAGATCTGCCCAAAAGTTACAACGAGGCCAAATCAATAACGTTTAGTCTCATTATGTACTATCTGACCTGGATTGCATATTTCACAGCATGCCTcattattaaaagcaaatacatggtaatttttaatgcaatggcCCAGGTATCCAGTATAAATGGAATTCTCTTCAGTTATTTCATACCAAAATCTTACATTATAATATTCcaaccacaaaaaaatactcCTGCTTACTTTCAAACATCTATTCAGAATTACACCCAAACCATTAGTAGGACTTAG

Function

NR:

description
PREDICTED: taste receptor type 1 member 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246601.1 True 2502 mRNA 0.38 6 22748545 22756185

Neighbor

gene id symbol gene type direction distance location
LOC122350076 LOC107748967,LOC107595759,LOC107698846,LOC107678416,LOC107602469,LOC107710786 coding downstream 119986 22625423 ~ 22628559 (-)
LOC122349924 nfu1,LOC107664472,LOC107678441,LOC107553147,LOC107570003,LOC101170349 coding downstream 233510 22511952 ~ 22515035 (-)
rasef rasef,LOC107678388,LOC107752555,LOC107755592,LOC107562642 coding downstream 291276 22438470 ~ 22457269 (-)
rmi1 rmi1 coding downstream 377928 22366400 ~ 22370617 (-)
ntrk2a ntrk2,ntrk2a,LOC107752549,LOC107757434,LOC107678451 coding downstream 383722 22324786 ~ 22364823 (-)
LOC122351034 LOC107552255 coding upstream 1591 22757776 ~ 22760114 (-)
LOC122350037 LOC107575601,LOC107757083,LOC107574252,LOC107752574,LOC107678367,LOC107678397,LOC107752571,LOC107552256,LOC107703982 coding upstream 23069 22779254 ~ 22790487 (-)
LOC122351014 LOC107757082,LOC107703982,LOC107757083,LOC107757080,LOC107678397 coding upstream 56670 22812855 ~ 22816347 (-)
LOC122349927 LOC107710781,LOC107748971,LOC107678464,LOC107698851 coding upstream 62784 22818969 ~ 22824591 (-)
aak1a aak1a,LOC107678431,LOC107710782,LOC107698849,LOC107748970,LOC108426667,LOC107595757,LOC107602451 coding upstream 80924 22837109 ~ 22874898 (-)
G66235 LOC107703993,LOC107755595 non-coding downstream 43420 22699448 ~ 22705125 (-)
G66217 LOC107664463,LOC107755600 non-coding downstream 90886 22654971 ~ 22657659 (-)
G66207 NA non-coding downstream 123368 22580402 ~ 22625177 (-)
G66206 NA non-coding downstream 199227 22547651 ~ 22549318 (-)
G66163 gkap1,LOC107562640,LOC107757429,LOC107664507,LOC107678454,LOC107553117 non-coding downstream 360762 22386082 ~ 22387783 (-)
G66337 NA non-coding upstream 226526 22982711 ~ 22983165 (-)
G66339 NA non-coding upstream 229161 22985346 ~ 22986961 (-)
LOC122350914 NA non-coding upstream 295697 23051882 ~ 23054592 (-)
G66368 NA non-coding upstream 484787 23240972 ~ 23245510 (-)
G66372 prdm16 non-coding upstream 626953 23383138 ~ 23383354 (-)
LOC122350259 LOC107678445,LOC107752560,LOC101882811,LOC107553112,LOC107757078,LOC108426735,LOC107703990,LOC107757081,LOC107553140,LOC107678447,LOC107752570 other downstream 1466 22727180 ~ 22747079 (-)
LOC122349902 nfu1,LOC107678441,LOC107553147,LOC107664472,LOC107570003 other downstream 108222 22637275 ~ 22640323 (-)
gfpt1 gfpt1,LOC107678434,LOC107553119,LOC108426669,LOC107710818,LOC107752562,LOC103362312,LOC101170101,LOC107562636 other downstream 482684 22243202 ~ 22265861 (-)
antxr1a antxrl,antxr1a,antxr1,LOC107661337,LOC107710819,LOC107562635,LOC108265351 other downstream 638458 22075010 ~ 22110087 (-)
LOC122350973 dmtn,LOC107586118,LOC107687659,LOC107720576,LOC107553712,LOC107705088,LOC107571963,LOC107702870,LOC107723027 other downstream 679788 22060015 ~ 22068757 (-)
G66310 NA other upstream 39437 22795622 ~ 22796362 (-)
ddx51 ddx51 other upstream 73019 22829204 ~ 22835591 (-)
tprg1l tprg1l,LOC107698845,LOC107710788,LOC107678419,LOC107748986 other upstream 170271 22926456 ~ 22931165 (-)
G66410 LOC107687112,LOC107595766 other upstream 820768 23576953 ~ 23583368 (-)
G66451 LOC107595774,LOC107733967,LOC107748958,LOC107693424 other upstream 901880 23658065 ~ 23663536 (-)

Expression


Co-expression Network