LOC122350264 (dgcr6,LOC107572069,LOC107721026,LOC105899531)


Basic Information

Item Value
gene id LOC122350264
gene name dgcr6,LOC107572069,LOC107721026,LOC105899531
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1447000 ~ 1454530 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246610.1
TGCGCATGCGCAAACATGCACGCACGGTTCAAAACAATAGTCTCTTGAATGTGTGAGATTTGTTATTATACATCATAAACAGCAGACGTACGCTCTTATTGAACGCCACACGCATCAAACCACAACATTTTCCTCTCAGGAGGCTGAGATATAAAGCGGACCCGTGCTGGAGCGGCGTTAAGAAGACCCCTGTTTTGTTGACGATGTGCAGGCTGAGTGTGGGATGGACACGTACCCGGCCGTGAGAGACGACCCGTCGGATGCCGCCAGGCAGCAGGAGAGACACTATTACCTGCTGTCAGAGCTGCAGACGCTCGTGAAGGACCTGCCCAGCTCGTTCCAGCAGCGTCTGTCCTACACCACTCTCAGTGATCTGGCCCAAGCGCTCATCGACGGGACGGTGTACGAAATAGTGCAAGGACTGCTGGACATTCAGCACCTGACGGAGAAGAACCTCTACAACCAGAGACAGAAACTACACAGCGAGCACagagctctcAAGCAGGATTTGGTTCGGAAGCACAAGCAGGCTCTGCAGATGTGCAAGTCTCACAATCTGTCCGTTGTGAAAAGCAACCAGAGAGCGGAGACTGAGGCTCTTGATCAGCGGGTGAGAGAAGAGCAGAGGATGATGGACGAGAAGGTGGTGGCTGAGATGGATCAGAAGGTTCTGGATCAGCAGAACACTCTGGAGAAAGCAGGCGTGCCGGGTTTCTACATCACCTCCAACCCTCAGGAGGTGATGATGCAGATGAATCTTCTGGAGCTGATCCTGAAGCTGCAGCAGAAAGAGAGCGGTGTCTGGATCTCTTCCTGACCGGGCGTGGATGAG

Function

symbol description
dgcr6 Orthologous to several human genes including DGCR6L (DiGeorge syndrome critical region gene 6 like).

NR:

description
PREDICTED: protein DGCR6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246610.1 True 832 mRNA 0.53 6 1447000 1454530

Neighbor

gene id symbol gene type direction distance location
pym1 LOC107701384 coding downstream 194484 1250060 ~ 1252516 (-)
LOC122350094 NA coding downstream 198636 1244834 ~ 1248364 (-)
ap3s1 ap3s1,LOC107661175,LOC107566394,LOC107729057 coding downstream 278543 1160400 ~ 1168457 (-)
dmxl1 dmxl1,LOC107571775,LOC107663590,LOC107704574 coding downstream 389073 1016890 ~ 1057927 (-)
prr16 LOC107713553 coding downstream 442587 998648 ~ 1004413 (-)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 39975 1494505 ~ 1523464 (-)
LOC122350659 NA coding upstream 173123 1627653 ~ 1646362 (-)
LOC122349997 NA coding upstream 255828 1710358 ~ 1714221 (-)
LOC122350661 NA coding upstream 317452 1771982 ~ 1777474 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding upstream 382593 1837123 ~ 1852539 (-)
G60189 NA non-coding downstream 134856 1311885 ~ 1312144 (-)
G60188 NA non-coding downstream 167697 1279000 ~ 1279303 (-)
G60187 NA non-coding downstream 177616 1268798 ~ 1269384 (-)
G60169 trim36,LOC107749435,LOC107573790 non-coding downstream 180191 1232076 ~ 1266809 (-)
G60166 LOC107701385,LOC107573793,LOC107749411,LOC107572966,LOC107728257,LOC107661167 non-coding downstream 180768 1264599 ~ 1266232 (-)
G60199 NA non-coding upstream 3440 1457970 ~ 1514295 (-)
G60217 NA non-coding upstream 87916 1542446 ~ 1544129 (-)
LOC122350073 NA non-coding upstream 196390 1650920 ~ 1655010 (-)
LOC122350074 NA non-coding upstream 203208 1657738 ~ 1659992 (-)
G60209 NA non-coding upstream 206959 1661489 ~ 1671766 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 90047 1349171 ~ 1356953 (-)
commd10 commd10,LOC107728250,LOC107663591 other downstream 287714 1140698 ~ 1159286 (-)
G60098 NA other downstream 308848 1135401 ~ 1138152 (-)
csgalnact1b LOC107712620 other downstream 707628 732793 ~ 739372 (-)
LOC122349987 LOC107661519,LOC107712504,LOC107726877,LOC107704593,LOC107573347,LOC794598 other downstream 715156 723145 ~ 731844 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other upstream 107016 1561546 ~ 1606609 (-)
G60220 NA other upstream 122275 1576805 ~ 1580616 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other upstream 278334 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other upstream 294532 1749062 ~ 1762549 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 604864 2059394 ~ 2061481 (-)

Expression


Co-expression Network