si:dkey-6n6.1 (si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204)


Basic Information

Item Value
gene id si:dkey-6n6.1
gene name si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6825338 ~ 6834435 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246634.1
TTCCATCAAACGTGCACTAGCAGTGAAGCACAAACAATAATGAGCGTTTTAGGAGAGACTTCAAGctatgttttattcatcaacaCATTAATCTGAAATCCCACACACCGGAAGTGCATCCGTTGACGTCAGAACATTAAATCATGTAAAAGataagtttttttcccccttgagGACGCTCtaatagtttgtttttctctcaggACCGACGGGCGTTCGTTGAGAGGGAAAGGAGAGGCGGTTGGTGGGTCTTCAGGGCGAGTGAAAGAGGAGCTTTGTTGaaactgttttgattttattttttccctctcaCTCCCCTGCTTCCGTTCCATTCCTTCCTCCTCACTCTCTGCTCTCAcctttgcattttgttttcttttttttttccctcagaggGATGGGTGATGGGTTGAACATGATTTCCAGAGGCAGAATATAACTGGCCTTTCAGACGGTGCAGCCCTCAGAGTCATTGAGACAGCTGTCTCTGGCAGATTGTACCTGAGCTGACTCCAGCACGCATTAACAATGTACAATTCTTTAGCTttgtgtctgtttctgtgtttaGCGCTTTTAGCGGCTGAGGGAAAATGGGAAAagggaagaagagagagacagaggagctCCAGACGATTCTTAGCCACTGAGGATGCACCTGAGTCTGATAACCCTTTCCTTCCAGGGCGTAGCAGCCAGTGCTTGGTGAATGGGATTTCTCTGTTTGAGGGGGCTGTCTGGTCTCCAGAGCCTTGCAGTGTGTGCCAGTGTAAAGATGGAACCGCAAGCTGCCGAACCATCCCCTGCACGGCCAGAGCTTCACCCACCCTGAAGTCTGTGGCCAGTAAGGCCAGTCCAACgtctgtggggaaaaaaagctcgAAAAACAGACTGACAGGAAATGGAAAACCACCTGTGGGGATGGAGGTTCTGGAGGTGAAACCAAAGAAGAACAAGTTGGTGATCGCTCCAGCAAAAGAaccacCCTCAAATGTCCCAAAGAAGCAAGTGAAGAAAAACCAGGAGGTGATTGTGAGTCTGGATCCAGGAAAACCACCTAAGACTCCTGTAATACCCACAGTACCACGGTTCATGAGACCAGTCCCTTTCGATTATGATGATCACGATGATGACGACTATCTAGAGGACGACAGCGACAGTgacgatgatgacgatgatAACCGCAGCTTTCCAGTGTTCAGATCTGCTGTTCGCCCTGTAGCAGTCGAAAGACGAGTACTACCTCCCACATTCAAACCGGCCATACCACGAGCACAGCCAGCCTTTGCTCTTCCTACAAGAAAATCTGTGATCCTGCCCACTGGAAGGCCACTGCCAGCTCCCAGTGGGCGACCGGTGGATCGAGGTATTGGCCGTCCAATCTTCAGCACCTCTGTTCACATGGAGTCTCTCCCAGCAGGCTGCCTGCTTTCAGAGTCTCTTATTGCTTGTGGAAACACTCGCCTTACCCAAATGCCCATCATCAAAGATGCAGGGGTCAGGAGTCTCTTTCTAGCAGATAACAAAATCAGCAAGATCCCGTCGCATGCTCTGGCAGGTCTTCCCAACCTGGAGTGGCTCGACCTCAGCAAGAACAAGCTGGATGATTTCTCTTTAGGACCGGATGTGTTTCGGAACTTGACGAAGCTCAGGAGGTTGAACATTGATGGAAACAACTTCACCAAAGTGCCGGCTCTCCCTCCGTCGCTGGTGGAGCTGAAGATCAACGATAATAAGCTCAGTGGTCTCACTCCCCACAGCTTTCAGGgtcTGTCTCAGCTGCTGACACTTGAGTTAGAGGATAATTATTTCCATGATGGAAATGTCTCTCCTCTGGCCTTCAAGCCTCTCCGGAGGCTGATTTACCTCAGGCTGGATGACAATAAGTTCAGGGCTATTCCCTCTGGTCTGCCTATTTCAGTACAGGAGCTACACCTGTCTGACAACAAGATAGAGGTGATCCATTCAGGGCTCCTCAACAAGACCACAAACCTGAGAGTCCTGAACCTCAGCCATAACCGGATCAGAGAGGACCGCATTCATCCAAGAGCATGGATACACTTGCTAAAGCTGGAGTATTTGGACCTTTCTCACAACAAGCTGGTTCACGTTCCCTCTTTCCTGCCGGTTGGTCTGCGGCAGCTGATCTTACATCATAACCAAATCGAGCGCATCCCTGGCTACGTGTTCGGCCACCTGCGACCTGGTCTGGACTCCCTGCAGCTGTCGTACAACCGCCTGCGTGAAGACGGGATAAATGAAGTGTCGTTCCTGGGTCTGTACAACTCACTGACTGAACTTCTGTTGGACCATAACCAGCTCCGATCAATCCCACGAGGCATTCTACAGCTAAAGGCCCTGCAGCATCTGAGGCTGAACCACAACTACATCAGCTACATCACTATGAACTCATTGTGTGACACTACTGCCCGCGAGGACTCCCTGCTGCTGTCTGTTCACCTGGAGTTCAACCTGATCGACCGCCGCCTCATTCCACCGACAGCCTTCTCCTGCATCAAAACCTACCAGAGCGTCCTTCTGCGGCCCCAGAGATACGAAGAGCACCATGAATGAATGCACTTTTTAGTTTAAAGTGCATTTCAATTCAGTGCTTAATGCAGAGTTTTAACTGAAATGAAGATCGAGGTGACGCTCCCTTTTCACACCAGAGGCCTTTTATTTTGTGAGTTGTGTTTTAGCTGTTGTGTTCTGACGTCTCTGTCTCATTGGGgtcacacatgcacatgcattttTTCTGCTTTACTGCAACTAAAACTACTGCCGATATTTGTTGTTTGACATTAGCATTGACTGTGTTTATGCTTTAACAGATTTGTTGGGGGTTGTGCACACATTTACATGGTGCTAAATGATGCAGTTGGCAttatattattgtgtatttttgttgttgctgttacCATATCTAATGTCTGTCTTGGTTCGTTATTTACCTGTAAGTCTGCAATTTACAATCTCTTATGAAGCAGACTTGTACGTGTaaggatttctttcttttttcaagtATATGCAAAAGGTTTTTAATAGATAAgctttatacattatttattttttgattaaactgccttgcatcatattttttgttttagtaccTTTTCAACAatttatattcagttttatGATACTGTGTGTTGTCTGTGCTTTTGTATTCTCTTTGTCACAAACTACAATAAAGTTGA

Function

symbol description
si:dkey-6n6.1 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix.

NR:

description
extracellular matrix protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246634.1 True 3194 mRNA 0.47 10 6825338 6834435

Neighbor

gene id symbol gene type direction distance location
bgna LOC107665058,LOC107755294,LOC107700508,LOC107550196,LOC107757994 coding downstream 1325 6816911 ~ 6824013 (-)
dedd dedd,LOC107755304,LOC107665071,LOC107603111,LOC107699191,LOC108411641 coding downstream 10998 6807841 ~ 6814340 (-)
atp2b3a atp2b3a,LOC107755305,LOC107758015,LOC107699155,LOC107603076,LOC107665062 coding downstream 23743 6774874 ~ 6801595 (-)
si:dkeyp-110g5.4 LOC107665063,LOC107755306,LOC107599055 coding downstream 50602 6771172 ~ 6774736 (-)
igf3 LOC107755307,LOC107598996,LOC107665064 coding downstream 54854 6766966 ~ 6770484 (-)
rhoaa rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655 coding upstream 7351 6841786 ~ 6847353 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding upstream 14038 6848473 ~ 6849715 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding upstream 16081 6850516 ~ 6859706 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding upstream 26472 6860907 ~ 6874965 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding upstream 277701 7112136 ~ 7135496 (-)
G61663 NA non-coding downstream 167054 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 263420 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 273627 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 356922 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 550128 6273884 ~ 6275210 (-)
G61782 NA non-coding upstream 27593 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 440155 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 471677 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 543320 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 555853 7390288 ~ 7394209 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 8591 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 382356 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 864232 5919961 ~ 5961106 (-)
G61513 NA other downstream 1207674 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1215766 5605172 ~ 5609572 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 40914 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 257015 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 843061 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1282573 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1557910 8392345 ~ 8416553 (-)

Expression


Co-expression Network