rhoaa (rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655)


Basic Information

Item Value
gene id rhoaa
gene name rhoaa,LOC107599000,LOC107758012,LOC107603137,LOC107755302,LOC106566835,LOC105890655
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6841786 ~ 6847353 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246636.1
TTCTGCCTCTGATTGGTGGAAACGATCGAGGATGGGCGTGTCTTAGCGGCGTGGCACCGTCTGCGGGGCGGGGCCTTGGGGTCGTACAGGAAAAGATAAAGAAAGCGAGgacatctaaaacaaaaacgATGGCTGCAATTCGTAAGAAGCTTGTAATAGTTGGGGATGGAGCATGTGGAAAGACGTGTTTACTAATCGTTTTCAGTAAAGACCAGTTTCCTGAGGTCTACGTACCCACAGTGTTCGAGAACTATGTTGCTGATATTGAGGTGGACAGCAAACAGGTGGAACTGGCTCTGTGGGATACAGCTGGACAAGAGGACTACGACAGGCTGAGGCCCCTGTCCTACCCAGACACTGATGTCATCCTCATGTGCTTTTCCATAGACAGCCCTGACAGTTTGGaaaatatcCCAGAAAAGTGGACGCCAGAGGTAAAACATTTCTGTCCAAATGTGCCAATAATTCTGGTTGGTAATAAAAAGGATTTACGGAATGATGATCACACTCGACGGGAGCTGCTGAAAATGAAACAGGAACCAGTGAAACCAGAGGAAGGGCGAGACATGGCTAATCGCATCAATGCCTTTGGCTACCTTGAGTGTTCAGCTAAAACTAAGGAGGGCGTGAGGGAAGTGTTTGAAATGGCCACAAGAGCGGCGCTCCAAGCCAAAAAACGTGGCAAGAAGAATCCCTGCGCTTTGCTATAGAGAAcgagaggaaaagaaaagaaaaagaacgaGGGAGGGAAAGGGGTAACCAAACTAGGCCAAGGAAAATGAAAGAGCTACAAAAGTTCGCAAATAGAGGGAAGAAACGCCCCTAGTGTTATGTACTCGGGGAGGGTCATTTTCAATTCAGGCCAAAGGAAACTACAGAAGATTGTAGGGACAACTGCACCGGCAAAAAGGGACTTAAACATGTTTATGGCCATCAGTCCTCTTTAAAATCAAGATTAGTTGACCTTAAGACTGATCGCGAGCATAAGGATAGTGTATATGTAGGGTAAAGATTGACGTGGTTTCACAGTGGCTCACTATCACTGATTGCTTTTGGGGTGGGATTATATGCGATGTATTCTTGGCCCATACCACATCTTCTGCTTAGAAGGTCAACACTGTTAGCAAGAACAGAAACAAACGACTTGGTCTAAAAAGATTCCTTTTTTGGCACTAAGTGCATTATTCAGGGTGTAAAAGGCATTAGTTAGTACCCTACATCATGTATGCTACATGTCAAGCAGGGAGGTGTTTTTTGGATCAAGACATTGACTCCCGTGATCCCCTTTATAAACCTCCCAGGAACCCAGTGCCGTCTTATGTAAAAACATTCATgcctacatttttgtttaatgatcTTTTTCTTACATTAACACGCTAATACTGTTGGTTAACGCAACTGGTTCCTCTGTGCCCTCCTGTCCTGTCGCAAAATTGGCGGTTTAGTCACTGGTTTAAAATAGCTGAAAGTAGTGGTAGTCTTACAATTCTTTATTCCaataagatttaaatatatcttgTACTTTTTTGCCATTTGCCTATAAAACTCAAAGCAAGATGCATTAAGCAACTATCATACTAATTCACCTTTTTTGTGAGTATTTTATGTGCTTGCTCatgtattgtaatttaaaaaaaacaaaaaaactttgggTTAATCAGCCCTCGTGGAGCTCAAAGCAGACCTCTGCTCTGTACGTTGACTGTCAGACACTGTTCGAttttgacaatatatatataagtttaacAAAAAGGTGACAGTAACATTATTTTTGCCCGTATTCCTCTTTGCCTGCATGACAGGCTTTTATTCGGTGTGCGGAAATATTTGGTGTCACTGTATAAATAAGAAACTCCctccatttgttttctttttactatTCCCCTCTTTTTCTcctgtactgtatgtttttcttttaattttttttgtgaaattctACTGGCTTATACTATATCATTTTTGCGAATTTTACAAATTCTAGTATCTTagaattttaaagttttaaaagaaataaagaaggaaaaaagtaGCGAAAATGTGATTGAGAGAGCTGTTTAATGccatattattaaatgcaagCAATTTCTTAGAAGAGATTCTGCATTtcattgtaagaaaaaaaagagccttTGATGCATCAATTATCTTTTGTATACCAGTGCATCTTTGGATTTCCACAGACTCATTTGaaatgtattgaaaaaataaattcttataGGGTAA

Function

symbol description
rhoaa Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human RHOA (ras homolog family member A).

NR:

description
PREDICTED: transforming protein RhoA-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246636.1 True 2223 mRNA 0.40 5 6841786 6847353

Neighbor

gene id symbol gene type direction distance location
si:dkey-6n6.1 si:dkey-6n6.1,LOC107599056,LOC107755293,LOC107665074,LOC107699266,LOC107757992,LOC107550204 coding downstream 7351 6825338 ~ 6834435 (-)
bgna LOC107665058,LOC107755294,LOC107700508,LOC107550196,LOC107757994 coding downstream 17773 6816911 ~ 6824013 (-)
dedd dedd,LOC107755304,LOC107665071,LOC107603111,LOC107699191,LOC108411641 coding downstream 27446 6807841 ~ 6814340 (-)
atp2b3a atp2b3a,LOC107755305,LOC107758015,LOC107699155,LOC107603076,LOC107665062 coding downstream 40191 6774874 ~ 6801595 (-)
si:dkeyp-110g5.4 LOC107665063,LOC107755306,LOC107599055 coding downstream 67050 6771172 ~ 6774736 (-)
ndufb11 LOC107550213,LOC107665059,LOC107700515,LOC107599058,LOC107755291,LOC107757991 coding upstream 1120 6848473 ~ 6849715 (-)
def6a def6a,LOC107550223,LOC107755289,LOC107599059,LOC107757990,LOC107700524 coding upstream 3163 6850516 ~ 6859706 (-)
sin3b sin3b,LOC107755301,LOC107758010,LOC107699271 coding upstream 13554 6860907 ~ 6874965 (-)
qsox1 qsox1,LOC107665072,LOC107755296,LOC107758006,LOC107699344,LOC107603198 coding upstream 264783 7112136 ~ 7135496 (-)
cep350 cep350 coding upstream 289709 7137062 ~ 7168792 (-)
G61663 NA non-coding downstream 183502 6657498 ~ 6658284 (-)
G61640 NA non-coding downstream 279868 6561450 ~ 6561918 (-)
G61629 NA non-coding downstream 290075 6551404 ~ 6551711 (-)
G61582 NA non-coding downstream 373370 6467953 ~ 6468416 (-)
LOC122350799 LOC107725298,LOC107598986 non-coding downstream 566576 6273884 ~ 6275210 (-)
G61782 NA non-coding upstream 14675 6862028 ~ 6862954 (-)
G61860 cacna1e,LOC107707593,LOC107657843,LOC107599003 non-coding upstream 427237 7274590 ~ 7281165 (-)
G61865 NA non-coding upstream 458759 7306112 ~ 7308340 (-)
LOC122350886 NA non-coding upstream 530402 7377755 ~ 7378459 (-)
LOC122350888 NA non-coding upstream 542935 7390288 ~ 7394209 (-)
LOC122350104 LOC107755295,LOC107665061,LOC107598999 other downstream 25039 6814471 ~ 6816747 (-)
LOC122350671 fibcd1,LOC107739453,LOC108428067,LOC102776889,LOC107596897,LOC107700935,LOC105015243,LOC106936583 other downstream 398804 6423742 ~ 6442982 (-)
LOC122350596 LOC107557202,LOC107757303,LOC107725315,LOC107674335 other downstream 880680 5919961 ~ 5961106 (-)
G61513 NA other downstream 1224122 5614329 ~ 5617664 (-)
c8h9orf116 LOC107757294 other downstream 1232214 5605172 ~ 5609572 (-)
xpr1a xpr1a,LOC107758009,LOC107755298,LOC107699288,LOC107665065,LOC107603171,LOC107599040 other upstream 27996 6875349 ~ 7056429 (-)
lhx4 lhx4,LOC107699337,LOC107550233,LOC107758007,LOC107599001,LOC107755297,LOC107665078 other upstream 244097 7091450 ~ 7102993 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other upstream 830143 7677496 ~ 7687562 (-)
LOC122350139 elavl4 other upstream 1269655 8117008 ~ 8232774 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other upstream 1544992 8392345 ~ 8416553 (-)

Expression


Co-expression Network