si:ch211-170d8.2 (LOC107550939,LOC107753111,LOC107703157,LOC107554433,LOC107687993,LOC107712458)


Basic Information

Item Value
gene id si:ch211-170d8.2
gene name LOC107550939,LOC107753111,LOC107703157,LOC107554433,LOC107687993,LOC107712458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18095035 ~ 18098303 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246651.1
gatcAACATTAGggtaaatatataagtaaacaataacagattgttgggtgaactaaccctttgaATATTTACGACCTTAAAAAATGGGttgtaaatgctaaaataatatatttctcttTCAATATATAGACATTCAAACACACAAGTGTCTTAATAGTAAACGTGAGCTACACCTGTGGTTCTGTGTGTGAACTTTAAGAGAACTCACCTCATGCATCCAGTAAAAATCAGACCGAAACTACTTCAAAAGCGAAGTTAACTGTGAGAAAAGCTACTTAGATAACAAACAATCAGCTATGTAATTAAATTCTTACATTTCTATTAGTATGAATTGCAAAGCGTAgcttaagtgtccaaatactaCTTAGGGTCAGTGCATGTGCACCCAGATGAATGGTTTCTATATCCCAGATTACCTCTCTATTGGTTGTGGAGCTATTGTCGGGATAGGGCAGTTTGGGAAAGTTTTATGCTTCCCTTGGTCCAAGTTGTTTCTCTTGCAAATGAGCAGCTCGTTGGTGATGGTGCAGATGTTCTGTAATGAGGGTCATTAGGAGGGAGAATAAGAATGGCCTGGACTGCCAGGGCTCTGGGCGCCTCATTATGCAGACACATTTAAAAGGTCGATGGGGGTGCGAATGGCTGCTTAAGGGTCCCAAACAAAACCAGGGGGAGGAGAGTCCAAAAGAAGCCAGAATTCAAATTCCACAGAAGAAACTGCGCTCATTGTCAGAGCAGGAGGATTTACCCTTTTATTCGCATAGTGGAGATCCCGAGACACGCACCTCCGGAGCGCAACGCATGTGGATATCCGAAATGGCCACGGTTACGCGCGCACGAGTTTCACTGCTGCTCCTCGCCTTCATGACTGTCGCTATAGGAGTACAGTGCAGATCGCTTCGCGCGCAGCTTCGCAAGGCGTCTTCGTTTCAGGGAGAGCGTAAAATCCGCATCGGACACGTCCAGAGACGCAGCCGTCGCGAGCCGGGATCCGAGCACGACCAGTGCGCCCTCCTGAGCGCCCCGTGGACGGAGAGCACCACTCCGCCTGGTGACTGGGGCCAGATGTACCGTCTGAAGATACTGTCGACGATGAGCGACGCTCCGCGTCGTGCCGTTTTCCCGGAACAGCCCCTCTTCAGATTCGTCAGACGGGTTTATCGCTGTTGTCAAGTGGGCTACCACTGTGGAAGTGTCAAGGGAATACAAGGCGGAAAAGTTGGGGATTACAACATTGAGTTTCTGCTCGGAGAGGATGTGCTGTCAGCACCGTTGGAGAAAGCAGAAgttcattttcacttttcaaaCCCCCGACGCCTGAATATCCAACCCGTGCTGCCCTCGCTGGAGAAACGAGGGTTCCCTACTCGgtACAGAGTCTGGTTGAGAGATGGTGTTGTGGAGCTGAGGGTGGATCTGCTCGCCCTCGTCCAGGCCCTGCAACTGGTCGTTGGAGGAGCCGGCAGAGGTCCGAGCGTGATGGAAATGCATCGGGTGAGGGGTTTGACCAGGCCAGGGGTTGTTGTCCAAAAGCAAAGACCCCCATCCCCTCAAGAAACGGTGCCTGTAGAGTGGGGGGAGGTGAATGAGGGCAGGGATGGTGCGGCCCCCCTGCAGCCCGCTTTAGAGCTGGGTCTGGCGTTACACTGCAGCTTACTGGACAGTATCGCACAGCCCTGTCGAGATTACGGTGTGCATCTAGAACACGCGCCCTTCATCGCCCTGACGTACAGATAGCAGGACACGTGCAGCTGTATTGAAGAGCATGCGTGCATTAGGAAACTGCTTCTGTGTCCGGCCAAACGGTGACAATCCCTAGCGCCCCCCCTTCACAAGTTCTTTGTGGCCATAAAAGTCCATTCAGTCCACTAACACCTGGTGTGAATGTTCCCTGGATGGTTCgctattttttaagaattgcTAATGATTCCCATTGTTCTGTGACAATGGTGCTTCAGTAGAAGCTTACTGTAATTCAGAGTGGCCTATGTTATATGGAACACTATGCACTTCAGCAtgtaaattgaatttattaacTTATGGGTGTTATTTGTGAGAAACGGTATGactgtataaatgtaaatagtgtataattacagttttatatattaaaacttttttttgcattgtatatACATGTCCAATAGTTTATTTTTCCTGTGGGCAGTGTATTGTTTCTTCTAAATTGTTTGAGACATTGCGTCTCAaggtgttttaaattaaatccaaTATGAAATGACTCACGTACTACAAATGAAGCATTTTCGGTGTCGATTGGTAATTCTAAACTAAAAAGTTTCTTATTTTACACATACAGTAGTTTCACACAGTACACATAATTTACTAAATCCTGGTTGGACATGATAGGCACTAACGCGATCAAattaacagtaaagacatttataatgttactaaagatttccatgtcaaataaatgctattcttttgaactttttatttatcaaagaatgccaaaaaaaaaatcagtttttcaactaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580253 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246651.1 True 2500 mRNA 0.45 3 18095035 18098303

Neighbor

gene id symbol gene type direction distance location
hps4 LOC107712456,LOC107753110,LOC107687970,LOC107703156,LOC107554431,LOC107550983 coding upstream 395 18086790 ~ 18094640 (+)
LOC122350291 cox6a1,LOC107687992,LOC107712455,LOC107550940,LOC107753112,LOC107703158,LOC107554435 coding upstream 8392 18084432 ~ 18086643 (+)
prkab1b prkab1b,LOC107687987,LOC107753114,LOC107554438,LOC107703154,LOC108412051 coding upstream 27749 18062682 ~ 18067286 (+)
msi1b msi1,LOC107687968,LOC107753116,LOC107712472,LOC107550984 coding upstream 41194 18037240 ~ 18053841 (+)
lzts1 lzts1,LOC107712471,LOC107687967,LOC107703152,LOC107753115,LOC107554439 coding upstream 62273 18011919 ~ 18032762 (+)
hnf1a hnf1a,LOC107712475,LOC107687971,LOC107550982 coding downstream 594 18098897 ~ 18106807 (+)
ggt5a ggt5a,LOC107703163,LOC107753105,LOC107712462,LOC107550924,LOC107580168 coding downstream 135627 18233930 ~ 18241230 (+)
rnf34a rnf34a,rnf34,LOC107687978,LOC107712480,LOC107703169 coding downstream 228155 18326458 ~ 18333713 (+)
orai1a orai1a,orai1,LOC107550979,LOC107687980,LOC107703171,LOC107753099,LOC106585507 coding downstream 250790 18349093 ~ 18354266 (+)
gck gck,LOC107657322,LOC107550933,LOC107712466,LOC107753094,LOC107703174 coding downstream 309783 18408086 ~ 18417020 (+)
G64665 NA non-coding upstream 435717 17359434 ~ 17659318 (+)
LOC122350066 LOC107748143,LOC107687963,LOC107553839,LOC107684508,LOC107753120,LOC107565328 non-coding upstream 721709 17365621 ~ 17373326 (+)
G64654 NA non-coding upstream 785759 17308945 ~ 17309276 (+)
G64650 NA non-coding upstream 848311 17245952 ~ 17246724 (+)
G64639 NA non-coding upstream 925078 17169563 ~ 17169957 (+)
LOC122351024 NA non-coding downstream 55340 18153643 ~ 18158590 (+)
G64835 NA non-coding downstream 126094 18224397 ~ 18224701 (+)
G64841 NA non-coding downstream 188993 18287296 ~ 18287541 (+)
G64855 NA non-coding downstream 249134 18347437 ~ 18348783 (+)
G64858 NA non-coding downstream 268267 18366570 ~ 18367110 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 14466 18071485 ~ 18080569 (+)
LOC122350299 LOC107550944,LOC107687988,LOC107753148,LOC107703140 other upstream 24107 18068716 ~ 18070928 (+)
LOC122350300 LOC107687986,LOC107554413,LOC107703155,LOC101885033,LOC108412050 other upstream 32687 18056972 ~ 18062348 (+)
LOC122350649 si:ch73-138n13.1,LOC107687963,LOC107748143,LOC107553839,LOC107565328,LOC107684508,LOC107753120 other upstream 398629 17683305 ~ 17696406 (+)
G64683 LOC107684500,LOC107753151,LOC107553834,LOC107566021,LOC107687959,LOC107742747 other upstream 538687 17555696 ~ 17556348 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other downstream 159917 18258220 ~ 18284961 (+)
sb:cb288 NA other downstream 320645 18418948 ~ 18423805 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other downstream 361748 18460051 ~ 18464547 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other downstream 467396 18565699 ~ 18600484 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 597151 18695454 ~ 18722246 (+)

Expression


Co-expression Network