LOC122350291 (cox6a1,LOC107687992,LOC107712455,LOC107550940,LOC107753112,LOC107703158,LOC107554435)


Basic Information

Item Value
gene id LOC122350291
gene name cox6a1,LOC107687992,LOC107712455,LOC107550940,LOC107753112,LOC107703158,LOC107554435
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18084432 ~ 18086643 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246653.1
TCTCCAGCGGCAGGGGCGCCTTAAAGCGTCTTCCGCCGTCGCTGTTTCAGTCTCCGCAAAAATGGCCGCGACCGGACGTCTATCCCAGAAGCTCCTGAAGTCCGCTAGGCTGACCCAGACCCGCCAGCTTTCCGCCGCAGCAGCTCACGGCGAAGATGCAGCCAAGACCTGGAAGATCCTGTCGTTCGTGGTAGCGCTGCCCGGCGTGGCGGTGTGCATGCTCAACACCTACCTCAGGATTCAACAGCACAGCCACGAGCAGCCCGAGTTCATCCCCTACAGCCACCTGCGCATCCGCAGCAAgCGTTTCCCATGGGGTGACGGCAACAAGTCTCTCTTCCACAACTCCCACGTCAACGCCCTCCCCGACGGCTACGAGCATCACGATCACTAAAGGCTGTCCGGAGCTCTCTCAGAACTCCCCTACTGGGACCAGAGGGCCCTCTGTCTCCCCCTCTAGTTTCTCTGGACCACTCCTCAATTTCATAATATCAGTTTACGTGACATCTGTCCAGTACGTTAAACTTACCTCTGTGCTCTCCGCACCTTGCGGGAGTACCTTATGGAAACAGTTACATTTACCTAAGGACCATTGTATCACATCGTCATTACAACTGAATTAAAATCtgttcattaaattataaa

Function

symbol description
cox6a1 Predicted to enable enzyme regulator activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including alar plate midbrain region; brain; eye; liver; and muscle. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease recessive intermediate D. Orthologous to human COX6A1 (cytochrome c oxidase subunit 6A1).

NR:

description
PREDICTED: cytochrome c oxidase subunit 6A, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02266 COX6A; cytochrome c oxidase subunit 6a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246653.1 True 645 mRNA 0.55 3 18084432 18086643

Neighbor

gene id symbol gene type direction distance location
prkab1b prkab1b,LOC107687987,LOC107753114,LOC107554438,LOC107703154,LOC108412051 coding upstream 17146 18062682 ~ 18067286 (+)
msi1b msi1,LOC107687968,LOC107753116,LOC107712472,LOC107550984 coding upstream 30591 18037240 ~ 18053841 (+)
lzts1 lzts1,LOC107712471,LOC107687967,LOC107703152,LOC107753115,LOC107554439 coding upstream 51670 18011919 ~ 18032762 (+)
gfra2a gfra2a,LOC107712470,LOC107559068,LOC107687966,LOC107565329 coding upstream 169102 17855968 ~ 17915330 (+)
LOC122351016 LOC107553825,LOC107687965,LOC107748115,LOC107684514,LOC107559058 coding upstream 318808 17749662 ~ 17765624 (+)
hps4 LOC107712456,LOC107753110,LOC107687970,LOC107703156,LOC107554431,LOC107550983 coding downstream 147 18086790 ~ 18094640 (+)
si:ch211-170d8.2 LOC107550939,LOC107753111,LOC107703157,LOC107554433,LOC107687993,LOC107712458 coding downstream 8392 18095035 ~ 18098303 (+)
hnf1a hnf1a,LOC107712475,LOC107687971,LOC107550982 coding downstream 12254 18098897 ~ 18106807 (+)
ggt5a ggt5a,LOC107703163,LOC107753105,LOC107712462,LOC107550924,LOC107580168 coding downstream 147287 18233930 ~ 18241230 (+)
rnf34a rnf34a,rnf34,LOC107687978,LOC107712480,LOC107703169 coding downstream 239815 18326458 ~ 18333713 (+)
G64665 NA non-coding upstream 425114 17359434 ~ 17659318 (+)
LOC122350066 LOC107748143,LOC107687963,LOC107553839,LOC107684508,LOC107753120,LOC107565328 non-coding upstream 711106 17365621 ~ 17373326 (+)
G64654 NA non-coding upstream 775156 17308945 ~ 17309276 (+)
G64650 NA non-coding upstream 837708 17245952 ~ 17246724 (+)
G64639 NA non-coding upstream 914475 17169563 ~ 17169957 (+)
LOC122351024 NA non-coding downstream 67000 18153643 ~ 18158590 (+)
G64835 NA non-coding downstream 137754 18224397 ~ 18224701 (+)
G64841 NA non-coding downstream 200653 18287296 ~ 18287541 (+)
G64855 NA non-coding downstream 260794 18347437 ~ 18348783 (+)
G64858 NA non-coding downstream 279927 18366570 ~ 18367110 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other upstream 3863 18071485 ~ 18080569 (+)
LOC122350299 LOC107550944,LOC107687988,LOC107753148,LOC107703140 other upstream 13504 18068716 ~ 18070928 (+)
LOC122350300 LOC107687986,LOC107554413,LOC107703155,LOC101885033,LOC108412050 other upstream 22084 18056972 ~ 18062348 (+)
LOC122350649 si:ch73-138n13.1,LOC107687963,LOC107748143,LOC107553839,LOC107565328,LOC107684508,LOC107753120 other upstream 388026 17683305 ~ 17696406 (+)
G64683 LOC107684500,LOC107753151,LOC107553834,LOC107566021,LOC107687959,LOC107742747 other upstream 528084 17555696 ~ 17556348 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other downstream 171577 18258220 ~ 18284961 (+)
sb:cb288 NA other downstream 332305 18418948 ~ 18423805 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other downstream 373408 18460051 ~ 18464547 (+)
gpat2 gpat2,LOC107712449,LOC107550920,LOC107657318 other downstream 479056 18565699 ~ 18600484 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other downstream 608811 18695454 ~ 18722246 (+)

Expression


Co-expression Network