si:ch211-251b21.1 (si:ch211-251b21.1,LOC107748962,LOC107595769,LOC107687113,LOC107691059,LOC107602462,LOC107755276)


Basic Information

Item Value
gene id si:ch211-251b21.1
gene name si:ch211-251b21.1,LOC107748962,LOC107595769,LOC107687113,LOC107691059,LOC107602462,LOC107755276
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23586529 ~ 23597131 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246659.1
GCCTCAAGCATTGAGCAATAATAAGGGGGTGACTACAGTTTAGGTGCAGGTTATTGGCAGGAAAAATGACTCCATTAGGACTCATCTTGGTTTCATCAGCACTGCTGGCTGGGCTCTGCGCTGCAGgacCACAGGTATTAAGAGTTACAACCATCAAGGAGGAACCGTACGCAATGTCCAAAGGCTCTGAACTGGAGGGTTTCTGCATTGACCTGCTGTCAGCTGTCTCAAAGAAATTAGATTTTAAGTATGATCTTAAGCTCGTAAAGGACGGCCGGTATGGCATAACGGATGACAGTGGCAACTGGAACGGCATGATCGGAGAAGTTGTAAGAGGGGAAGCAGACATTGCAGTGGCGCCTCTAACTCTAACAGCTAAACGTGAGCTGGTCGTGGACATGACCAAACCCTTCATGCAGACTGGTCTTAGTTTCATCCTGAGGAAAGACTTGGCTTCTGATGAATCGCAGTTCCTCAGCCTTCTCAACCTGTTCTCCACTGAGATGTGGATGGGTGTGCTGGTCGCCTACCTGCTGACCTCCGTCTGCATCTTCTTAGTGTCACGgattaGCCCCTGTGAGTGGGAGCAACcagaaaaggaaaagaattTCTTCACGCTCTCACACAGTTTTTGGTATACCGTGGGAGCAATGACTCTTCAAGGTGCTGGTCCTCATCCCAAGGCTCTTTCGGGACGGGTCATTACCTCTATCTGGTGGCTGTTTTCACTAGTGCTGCTTGCATGTTACTTCGCCAACCTTAGTTTATGGCTGCATTCAGACAACCAGCAAATGTCTATCAAGAGCTTTGAAGACCTCGCTAATCAAAACTTGATTGAGTACGGCACCATAAAAGATTCTTCCTCCTTTGCCTTCTTCAAGAACTCAAACAACCCCACATACCACAGGATCTATGAGCACATCAAGAAAGCCCAGAGCTATTCGCTCAATGCAGAAGAAGGTTTCCGCCGGGCTCAGAAAGGCAACTATGCATTCATCGGTGAATCTGTGTCCCTCGACCTGGCAGTGGCGAGACACTGTAACCTCACACGTGCTCCAGAAATCATCGGCATGAGGGGATACAGCATCGCCGCACCTTTAGGCTCTCCTTTGGTGAAAAACCTAAGTGTTGCCATTCTGCGTCTGAGCGAGTCTGGTGAGCTGGATTATTTCCGCAGTAAGTGGTGGGCTAGCAGCTGTGTGGCAAAAAATGGCAAGAGTGCTCCACTGAAGCCCACCAGTCTGAAGGGAATCTTCTTATTACTGGCACTCGGTCTGGGACTGGGGCTTTTCCTGGCTCTGATGGAACTGGCCGCCAAATCACGCAAAACCGCTAACACTCAGCAGAAATCCTGCTGCTCTGTCATGTCTGCTGAACTCAGTCAGCGCTTCAAAGGTGGAGAGGCGATGACACCAGAGTCCTCTGAAAAAAGCAAAGcctaaaaaaaagcactgacacacatgcatttaatcACTTAATGTTTATTACATCCACAACAAGTTACTCACTGCTAACCATACTGGGTGGGTGAAACTCATGAAAGAATTTCATTTGTTGTGCACACTTCAAAAATTCTATATTGATTGAAGAAAATTAAGCTAAATACGAGGgcgattatttaaaaaaaaaataatttgagaaCATTATAATTtcttatgtcatttatttctgggTGTAATATGACCCACGTTTCATGAGATTCAACCAGCATTTTATCTATCTAGACAACATGTGGctctattaattttattaaacatgtctaaaaattagttttatttagaaaaggAATTCCTCATTAATAATATAGCGTGTTATATTCTTTCATTACAAGTTCAGTTGCAGTACATACCTATAGGGTAAATTCCCCAGAAGTTTGAGAACACCCAAAAGTCTGACCAAACATATTCGTACTTATATCTAACTCATTAAAATCCGTCCTATACTGTTataaatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgccatgaagagtaaaactaaaaatggcATGAGAATATTGCATACACATTTGATCgaacatttatttctattaaaataaaatgatgcatgcaaaatatatacaggTACCCAGAAAATATTCTATTTCTTATTGTATGTGTCATTGCTTTAGGCTCGGTGAATTttcttaacaaaaataaaaatctgaaatatgctgtttgcatatttaa
>XM_043246660.1
AGCATTGAGCAATAATAAGGGGGTGACTACAGTTTAGGGTTATTGGCAGGAAAAATGACTCCATTAGGACTCATCTTGGTTTCATCAGCACTGCTGGCTGGGCTCTGCGCTGCAGgacCACAGGTATTAAGAGTTACAACCATCAAGGAGGAACCGTACGCAATGTCCAAAGGCTCTGAACTGGAGGGTTTCTGCATTGACCTGCTGTCAGCTGTCTCAAAGAAATTAGATTTTAAGTATGATCTTAAGCTCGTAAAGGACGGCCGGTATGGCATAACGGATGACAGTGGCAACTGGAACGGCATGATCGGAGAAGTTGTAAGAGGGGAAGCAGACATTGCAGTGGCGCCTCTAACTCTAACAGCTAAACGTGAGCTGGTCGTGGACATGACCAAACCCTTCATGCAGACTGGTCTTAGTTTCATCCTGAGGAAAGACTTGGCTTCTGATGAATCGCAGTTCCTCAGCCTTCTCAACCTGTTCTCCACTGAGATGTGGATGGGTGTGCTGGTCGCCTACCTGCTGACCTCCGTCTGCATCTTCTTAGTGTCACGgattaGCCCCTGTGAGTGGGAGCAACcagaaaaggaaaagaattTCTTCACGCTCTCACACAGTTTTTGGTATACCGTGGGAGCAATGACTCTTCAAGGTGCTGGTCCTCATCCCAAGGCTCTTTCGGGACGGGTCATTACCTCTATCTGGTGGCTGTTTTCACTAGTGCTGCTTGCATGTTACTTCGCCAACCTTAGTTTATGGCTGCATTCAGACAACCAGCAAATGTCTATCAAGAGCTTTGAAGACCTCGCTAATCAAAACTTGATTGAGTACGGCACCATAAAAGATTCTTCCTCCTTTGCCTTCTTCAAGAACTCAAACAACCCCACATACCACAGGATCTATGAGCACATCAAGAAAGCCCAGAGCTATTCGCTCAATGCAGAAGAAGGTTTCCGCCGGGCTCAGAAAGGCAACTATGCATTCATCGGTGAATCTGTGTCCCTCGACCTGGCAGTGGCGAGACACTGTAACCTCACACGTGCTCCAGAAATCATCGGCATGAGGGGATACAGCATCGCCGCACCTTTAGGCTCTCCTTTGGTGAAAAACCTAAGTGTTGCCATTCTGCGTCTGAGCGAGTCTGGTGAGCTGGATTATTTCCGCAGTAAGTGGTGGGCTAGCAGCTGTGTGGCAAAAAATGGCAAGAGTGCTCCACTGAAGCCCACCAGTCTGAAGGGAATCTTCTTATTACTGGCACTCGGTCTGGGACTGGGGCTTTTCCTGGCTCTGATGGAACTGGCCGCCAAATCACGCAAAACCGCTAACACTCAGCAGAAATCCTGCTGCTCTGTCATGTCTGCTGAACTCAGTCAGCGCTTCAAAGGTGGAGAGGCGATGACACCAGAGTCCTCTGAAAAAAGCAAAGcctaaaaaaaagcactgacacacatgcatttaatcACTTAATGTTTATTACATCCACAACAAGTTACTCACTGCTAACCATACTGGGTGGGTGAAACTCATGAAAGAATTTCATTTGTTGTGCACACTTCAAAAATTCTATATTGATTGAAGAAAATTAAGCTAAATACGAGGgcgattatttaaaaaaaaaataatttgagaaCATTATAATTtcttatgtcatttatttctgggTGTAATATGACCCACGTTTCATGAGATTCAACCAGCATTTTATCTATCTAGACAACATGTGGctctattaattttattaaacatgtctaaaaattagttttatttagaaaaggAATTCCTCATTAATAATATAGCGTGTTATATTCTTTCATTACAAGTTCAGTTGCAGTACATACCTATAGGGTAAATTCCCCAGAAGTTTGAGAACACCCAAAAGTCTGACCAAACATATTCGTACTTATATCTAACTCATTAAAATCCGTCCTATACTGTTataaatgcagtgtgtgtgtgtgtgtgtgtgtgtgtgccatgaagagtaaaactaaaaatggcATGAGAATATTGCATACACATTTGATCgaacatttatttctattaaaataaaatgatgcatgcaaaatatatacaggTACCCAGAAAATATTCTATTTCTTATTGTATGTGTCATTGCTTTAGGCTCGGTGAATTttcttaacaaaaataaaaatctgaaatatgctgtttgcatatttaa

Function

symbol description
si:ch211-251b21.1 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Is expressed in central nervous system; proliferative region; and spinal cord.

NR:

description
probable glutamate receptor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246659.1 True 2190 mRNA 0.43 10 23586529 23597131
XM_043246660.1 False 2179 mRNA 0.43 10 23586535 23597131

Neighbor

gene id symbol gene type direction distance location
plch2a LOC107687112,LOC107595766,LOC107691057,LOC107748961,LOC107602463 coding upstream 3152 23482895 ~ 23583377 (+)
mthfr mthfr,LOC107602465,LOC107691055,LOC107687111 coding upstream 129746 23447191 ~ 23456783 (+)
nppa nppa,LOC107691053,LOC107602452,LOC107595801,LOC107687143 coding upstream 155603 23428915 ~ 23430926 (+)
nppb LOC107687134,LOC107748982,LOC107595789 coding upstream 159325 23425908 ~ 23427204 (+)
nppal zgc:195023,LOC107595800,LOC107748995 coding upstream 162867 23422672 ~ 23423662 (+)
dpp9 dpp9 coding downstream 1597 23598728 ~ 23612503 (+)
ppih ppih,LOC107595772,LOC107602460 coding downstream 38018 23635149 ~ 23656851 (+)
ybx1 ybx1,LOC107595774,LOC107748958,LOC107693424,LOC107602459 coding downstream 60950 23658081 ~ 23664434 (+)
hes2.1 hes2.1,LOC107748974,LOC107687139,LOC107577158 coding downstream 143219 23740350 ~ 23741231 (+)
hes2.2 LOC107595804,LOC107748990,LOC107687144,LOC107734829 coding downstream 153115 23750246 ~ 23752431 (+)
G66351 NA non-coding upstream 151496 23434118 ~ 23435033 (+)
G66350 NA non-coding upstream 152784 23432809 ~ 23433745 (+)
LOC122350913 NA non-coding upstream 346717 23231564 ~ 23239812 (+)
G66344 NA non-coding upstream 348276 23237977 ~ 23238253 (+)
LOC122350915 NA non-coding upstream 355505 23230043 ~ 23231024 (+)
G66416 NA non-coding downstream 18085 23615216 ~ 23616682 (+)
G66418 LOC107748960,LOC107687117,LOC107691060,LOC107595771,LOC107602461,LOC107755278 non-coding downstream 23796 23620927 ~ 23623471 (+)
LOC122350145 NA non-coding downstream 79303 23676434 ~ 23681832 (+)
LOC122350936 LOC107710771,LOC106926566,LOC107691064 other upstream 175968 23403713 ~ 23410561 (+)
prdm16 prdm16,si:ch211-263k4.2 other upstream 184967 23054616 ~ 23401562 (+)
mfn2 mfn2,LOC107748965,LOC107602467,LOC107710790,LOC107678429,LOC107698839,LOC107595787 other upstream 599367 22973995 ~ 22987162 (+)
wrap73 LOC107748967,LOC107698846,LOC107595759,LOC107678416,LOC107602469,LOC107710786 other upstream 660761 22899436 ~ 22925768 (+)
fkbp1aa fkbp1aa,fkb1b,fkbp1a,LOC107574256,LOC107553142,LOC103030299,LOC107752559,LOC100705189 other upstream 859085 22724582 ~ 22727444 (+)
ndufa7 ndufa7,LOC107748992,LOC107755274 other downstream 35219 23632350 ~ 23634065 (+)
acot7 acot7,LOC107754737,LOC107687121,LOC107693425 other downstream 155437 23752568 ~ 23804049 (+)

Expression


Co-expression Network