prkab1b (prkab1b,LOC107687987,LOC107753114,LOC107554438,LOC107703154,LOC108412051)


Basic Information

Item Value
gene id prkab1b
gene name prkab1b,LOC107687987,LOC107753114,LOC107554438,LOC107703154,LOC108412051
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 18062682 ~ 18067286 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246662.1
CCGGGCTCGCTGGTTGTTTCCCTCGTCCCGAGCTGCAGGCGGAAGAGGTGTGCTTAACATTTAACCTTTTTGTGAGGCAATGTGAAAATGGCGTTATGAAAAGTAACGTAGTCGCGGGCTTCGGGCAGATAAAGTTTTCAGAGGAGCAGCATGGGCAACACCAGCAGTGAGAGAAGCGGAGCGGAGAAGACGCAGCGGCGAGAGAGCCGGGGTGGCAAAGATGGCGCTCGACCCAAAATCCTGATGGACAGTGCGGAGGACGGAGACCTCTTCCAGACGGACGATGCTAAGGAGTTTCTAGCCTGGCGACAAGATCAGGAATCAGATACTAAAGCCCCTCCGGAGGAAAGGCCCACTGTGTTCCGCTGGAATGGTCCGGGGAAAGAGATCTACTTGTCTGGCTCCTTCAACAACTGGGCCAGCAAAATCCCCTTGACTAAAAGTCATAATAATTTTGTGGCCATAATTGACCTGCCAGAAGGTGAGCACCAGTATAAGTTCTACGTGGACGGACACTGGATATTAGACCCCAAAGAGCCTGTTGTGACCAATAAGTCAGGTGTGGTGAATAATGTCATCAAAGTAAGGAAAACGGACTTTGAGGTTTTTGATGCGCTGAAGACAGACTCAGAGAAATGTGCCGACATGTCAGaCTTATCCAGCTCCCCGCCTGGACCGTACCATCAGGATCCCTACTCGGCCAAATCAGAAGACAGACTGCGCTCTCCTCCCATACTCCCTCCACACCTGCTGCAGGTGCTCCTCAACAAAGACACCGGGATCTCTTGTGACCCAACCCTGCTGCCTGAACCAAACCATGTGATGCTCAACCACCTGTACGCCCTTTCCATCAAGGACGGTGTGATGGTCCTTAGCGCAACACACCGCTACAAAAAGAAGTATGTGACCACACTGCTGTACAAGCCTATATGATCTCCATCACTAATCTCTCTGCTTTCTGCCTCATAATACTCACATTCATCCAAGAAGGGGACCAACTTCATTCCTCTGTCggctttatttgtgtttctcaGCTTCCGATCCATAAACCAGTATCTAACAACGTTTGCACAAATAATGTAATGAGCTTGCCGAATGTAAAAATATCACTTTGTAACAGGCTGGGGATGTCACTAAAAGACGTTTGACATTTAGTGGGAACATTCCCATCGCGATGCTCTGGATTTAGAATGATCtgcaaataaaattataactgTGTATGAATGGACCATTGTGCTAATAAAATGCACActaaaattta
>XM_043246664.1
atGACAAAAATACGACCGAAGCGGCAACACCCCGGTTTTACTTCCTCGGTGTTGCTGGGGTTAGCCTTTTCAACTGTTCAGGAATCTCCAAACAGCTAAAACTGCGCGACAACCCCGTGTGGCTGGAGCAGCATGGGCAACACCAGCAGTGAGAGAAGCGGAGCGGAGAAGACGCAGCGGCGAGAGAGCCGGGGTGGCAAAGATGGCGCTCGACCCAAAATCCTGATGGACAGTGCGGAGGACGGAGACCTCTTCCAGACGGACGATGCTAAGGAGTTTCTAGCCTGGCGACAAGATCAGGAATCAGATACTAAAGCCCCTCCGGAGGAAAGGCCCACTGTGTTCCGCTGGAATGGTCCGGGGAAAGAGATCTACTTGTCTGGCTCCTTCAACAACTGGGCCAGCAAAATCCCCTTGACTAAAAGTCATAATAATTTTGTGGCCATAATTGACCTGCCAGAAGGTGAGCACCAGTATAAGTTCTACGTGGACGGACACTGGATATTAGACCCCAAAGAGCCTGTTGTGACCAATAAGTCAGGTGTGGTGAATAATGTCATCAAAGTAAGGAAAACGGACTTTGAGGTTTTTGATGCGCTGAAGACAGACTCAGAGAAATGTGCCGACATGTCAGaCTTATCCAGCTCCCCGCCTGGACCGTACCATCAGGATCCCTACTCGGCCAAATCAGAAGACAGACTGCGCTCTCCTCCCATACTCCCTCCACACCTGCTGCAGGTGCTCCTCAACAAAGACACCGGGATCTCTTGTGACCCAACCCTGCTGCCTGAACCAAACCATGTGATGCTCAACCACCTGTACGCCCTTTCCATCAAGGACGGTGTGATGGTCCTTAGCGCAACACACCGCTACAAAAAGAAGTATGTGACCACACTGCTGTACAAGCCTATATGATCTCCATCACTAATCTCTCTGCTTTCTGCCTCATAATACTCACATTCATCCAAGAAGGGGACCAACTTCATTCCTCTGTCggctttatttgtgtttctcaGCTTCCGATCCATAAACCAGTATCTAACAACGTTTGCACAAATAATGTAATGAGCTTGCCGAATGTAAAAATATCACTTTGTAACAGGCTGGGGATGTCACTAAAAGACGTTTGACATTTAGTGGGAACATTCCCATCGCGATGCTCTGGATTTAGAATGATCtgcaaataaaattataactgTGTATGAATGGACCATTGTGCTAATAAAATGCACActaaaattta

Function

symbol description
prkab1b Predicted to enable protein kinase binding activity. Predicted to be involved in regulation of primary metabolic process and signal transduction. Predicted to act upstream of or within fatty acid biosynthetic process; phosphorylation; and regulation of catalytic activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1).

NR:

description
PREDICTED: 5'-AMP-activated protein kinase subunit beta-1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246662.1 True 1261 mRNA 0.48 8 18062682 18067286
XM_043246664.1 False 1243 mRNA 0.48 8 18062919 18067286

Neighbor

gene id symbol gene type direction distance location
msi1b msi1,LOC107687968,LOC107753116,LOC107712472,LOC107550984 coding upstream 8841 18037240 ~ 18053841 (+)
lzts1 lzts1,LOC107712471,LOC107687967,LOC107703152,LOC107753115,LOC107554439 coding upstream 29920 18011919 ~ 18032762 (+)
gfra2a gfra2a,LOC107712470,LOC107559068,LOC107687966,LOC107565329 coding upstream 147352 17855968 ~ 17915330 (+)
LOC122351016 LOC107553825,LOC107687965,LOC107748115,LOC107684514,LOC107559058 coding upstream 297058 17749662 ~ 17765624 (+)
LOC122350110 kazald1,kazald3,LOC107565325,LOC107748157,LOC107753117,LOC107581036 coding upstream 317670 17742020 ~ 17745012 (+)
LOC122350291 cox6a1,LOC107687992,LOC107712455,LOC107550940,LOC107753112,LOC107703158,LOC107554435 coding downstream 17146 18084432 ~ 18086643 (+)
hps4 LOC107712456,LOC107753110,LOC107687970,LOC107703156,LOC107554431,LOC107550983 coding downstream 19504 18086790 ~ 18094640 (+)
si:ch211-170d8.2 LOC107550939,LOC107753111,LOC107703157,LOC107554433,LOC107687993,LOC107712458 coding downstream 27749 18095035 ~ 18098303 (+)
hnf1a hnf1a,LOC107712475,LOC107687971,LOC107550982 coding downstream 31611 18098897 ~ 18106807 (+)
ggt5a ggt5a,LOC107703163,LOC107753105,LOC107712462,LOC107550924,LOC107580168 coding downstream 166644 18233930 ~ 18241230 (+)
G64665 NA non-coding upstream 403364 17359434 ~ 17659318 (+)
LOC122350066 LOC107748143,LOC107687963,LOC107553839,LOC107684508,LOC107753120,LOC107565328 non-coding upstream 689356 17365621 ~ 17373326 (+)
G64654 NA non-coding upstream 753406 17308945 ~ 17309276 (+)
G64650 NA non-coding upstream 815958 17245952 ~ 17246724 (+)
G64639 NA non-coding upstream 892725 17169563 ~ 17169957 (+)
LOC122351024 NA non-coding downstream 86357 18153643 ~ 18158590 (+)
G64835 NA non-coding downstream 157111 18224397 ~ 18224701 (+)
G64841 NA non-coding downstream 220010 18287296 ~ 18287541 (+)
G64855 NA non-coding downstream 280151 18347437 ~ 18348783 (+)
G64858 NA non-coding downstream 299284 18366570 ~ 18367110 (+)
LOC122350300 LOC107687986,LOC107554413,LOC107703155,LOC101885033,LOC108412050 other upstream 334 18056972 ~ 18062348 (+)
LOC122350649 si:ch73-138n13.1,LOC107687963,LOC107748143,LOC107553839,LOC107565328,LOC107684508,LOC107753120 other upstream 366276 17683305 ~ 17696406 (+)
G64683 LOC107684500,LOC107753151,LOC107553834,LOC107566021,LOC107687959,LOC107742747 other upstream 506334 17555696 ~ 17556348 (+)
ncor2 ncor2,LOC107687981,LOC107684513,LOC107753125,LOC107742750 other upstream 613546 17397266 ~ 17449136 (+)
LOC122350471 rimbp2,LOC107753130,LOC107572844,LOC107684492 other upstream 1463628 16495013 ~ 16599054 (+)
LOC122350299 LOC107550944,LOC107687988,LOC107753148,LOC107703140 other downstream 1430 18068716 ~ 18070928 (+)
LOC122350298 pla2g1b,LOC107703141,LOC107753147,LOC107554411,LOC107554412,LOC107550943 other downstream 4199 18071485 ~ 18080569 (+)
lrrc75ba lrrc75ba,LOC107712478,LOC107753104,LOC107703167,LOC107554425,LOC107687975,LOC105891565,LOC108414797 other downstream 190934 18258220 ~ 18284961 (+)
sb:cb288 NA other downstream 351662 18418948 ~ 18423805 (+)
adra2b adra2b,LOC107712484,LOC107657329,LOC107554404,LOC107753091,LOC107550971,LOC107703147 other downstream 392765 18460051 ~ 18464547 (+)

Expression


Co-expression Network