cttnbp2nlb (LOC107717506,LOC107669604,LOC107562782,LOC107679769,LOC107711913,LOC107591755)


Basic Information

Item Value
gene id cttnbp2nlb
gene name LOC107717506,LOC107669604,LOC107562782,LOC107679769,LOC107711913,LOC107591755
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 13351816 ~ 13369026 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246678.1
CAGCGGTCCATATTTTCGGCCGGGACAGTAGCACGGCCAGCAGCAGCGAAAGTGAGGAGTAACTCCTTGAACTGGGATAATTCTGACCGCCAGTACCGATGAGCGAACAAAAACACATATGAAGGGCAGCAGGATGAATGTGGAGACTCTCAGTAAAGCTGAACTTCTGATGCTGCTCAGCATTTTGGAAGGAGAACTAGAAGCACAAGATGTAGTCATACACACACTCAGGGCACAACAGAGAGATGCATTTGCACAGGAGCGATATGGACATTACAACCTCCGTGACCCCTTCGTAGCGCTGCTGAGAGACAGCGAGCTGTCGCAGGCTCAGGATGATGGAGGGCAGAGTCCCGTGTGTCTGAACCCGCTGGGTGTGTTGAAGCTGGTGATGGCCCACTGCACCAACATGAAGGAGAAAATGATGAAACAGCTCGCTGCTGCAGAGAGGAGACACAGAAGGGTAATAGCTGATTTAGAAGAAGAGAAACGGCGGCGTGCTCAAGACAATGCTGCAGGTGATGACATCACGGCCATGCTGGAGAAGGAACGGGACAGACTTCTGCAGCAGCTGGAGTTCGAGAGGGCCCAAATCGAGCGTTTAGAACGTGAGCATTCAGTCTTGTCGAATCAAGCTGAGGAGGATTTAGCACAACAGCAACAGTTATCCTCGACGCTAGCGAAAGAATGTCAGAAGGCTACAGCACGGGCAGAGGAGGAGAGCCACCGGGTTGCAGAGCTCAGCCGCCAACTGGAAAAGGAGACAAGTACCATCAAATCCCTAAAGGGGGAGCTGGAGAGCAAACACGCTCATGCTCAGCAGATAGAGGCAAGAGCTGAGAGAAAGCTCGCCGAATTGGATACAGAGCGTGAACAGATGAGAGGTAAACTACTGAAGGAAGAAAAACGATATCAGGAGCTTTTGGAGAAGTTCAATAGTCTAAAGAAAGAGTtggatgaaatgaaagaaagtgaAAAGGCAGGACTGGAAAAGGAcaatgaagaaaatgtaaaaactccACAGAAAGCAACCACAGGGATCACGCCTTCTCTTAGTCAAACAGAGGTTGACGGCAAAGCCATTGCATCTAAATCATCTTCGCAACCCAAGTTAAATGGTCACCACACTCCCAGAGAACCAGAGTCTCCAGCAGACGAGAGGTGCAAGGAAGTGGGATCGGTGGACACTGGGGTAATGCTCCCTGGAGGAAGTGGAGCCTTGCAGTGTCTCTCCCCCAGCAGTCCCGCCTCGTCCTCTCTTAGCTCATCTCCTTGCTCTTCCCCAGTACTGACCAAGCGTCTAGCCTCTATAGGCTGCTCTAGTCCGACCTATCCGGCCTCTTACCAGGCCAGCATCAATCAGCGATTCCAAGCAGCACGCCACAAGTTTCAGCAGCAAGCTGAGGCAGAGCAGCAACACGGAGCAACCATTGTCCACTCTCCTCGAGATCTCTCTCCTACTGCCGCCGCTCCTACTACCCCAGACAATTCTACTGCAAAGCAGATTGCCCGCAACACTGTCACTCAGGTGCTGTCAAGGTTCACAAGCCAACAAGCGACAAGTAAACTCCCTCCATCCAACAGCTCGCCCTTTGGCACTGATTACCGTAACCTGGCCGCAGCCTCCTCGCCGACGGGGAAGAGCCCAGGGGTTATGTCACCAGGGATCCGCTCCCCAATAATTCCTAGGGCGGAGAAGATTCATCCACCGCCTATTCCTCCTAAGAAGCAGGGGGTCAACCAGTCTCCCGGCTCACTGCTTCCTTCTGGGAGGGCCAGCCACTTCCCTGAGCTCTCTGGGAGCTGCGGTCTCACCAGTGGTCAGGAAGATGCAAAAGAGCTCGACTTGGTCATGTCATCATCTAGTTAACCAGCCTGGAGTTCACAGCCTGTGTGATATCTAAAGCACTCTCTCAGAGCCTCAAGGTTTCcttcttttgttattttcacCCTGATTGTCTTGTCATAGTTATTAATTCTTGTccttaaatggatagttcatccaaaaaattagttttattcaccctcatgccTTTAATACCTTTTTGAATCTTTTTGCTTTCCTGGACTTCCAGTGAAGGGACAGAAATATCTCACTGAAGAGTATCTTAAGAGTAATTTTTGTCCTGTggttttggaacaacttgagggtgagtaaatgcagacagaattttcattcttgGAAGAACAATCCTGTTAAGTACCTTGTTTTGAATGACTCCTTATCTGAAACAGTCCAGGTCTTGGAACCTTTACAAATGAGCTAACGTGGTAAAGAAAGACATCCCGATTTTCAGTGTTCCAGAACTGAAAACCACTGGTCTGAAAGAGCAGCCAAACCTTCTTCTGGAGAACTACCTTTCTGCAAAATGTTGCTCtaattttaatcaaacacacttaaTTGGCTGTTCaaggggcctcatttataaaaagtGTATCCGCTCACATTTGATCATAGAGGATGCCTGTGTTTAAATCCAAGACAGcgctcatatttataaaaactttgACGTCACGTCAGGGTTTGAGCAGAAGTACGCACTTTTTGTCGGAGTATAGcagttttttgaaaatgtaagctgcTTTTGCATCTCGATCGCTGCTCTAGATTATGATGATTGCTCATATTTTATGTGTTGATTATATTATGAGTGGTTTACAAGCAGAGAGACGAGCCATTCATTTGCGCGCAAGGTCAAGGTCGTTTGCGATTCatagatttcacatctgaaaaaGACACTTGATTTCTGACACGTGATTTCTGTCCGTACATTCATTCAATAAATCGCATATGCACGTAACGGAGAAATGATCGCAAGATTaaatttaggatggtttctgtgccacattttataaatgaggcccaatGTGCTCAGGATTACCTAAAGATTAAAAGCAGAGCGGTTGGTTACCTCTGCTCTGGTGTAACGCTAACAAGGTTGTCCAACTCCAAGGTTGAATTTGAAGGTTCACCtacctgcagagtttagctctaatgGTCTTGGGGtccgatttttttattttatttgaattatcatcattattatttgttttactttttttaatccaaatgcTCGCTTCAGATGCgaatttgcagaaaaaaaattatttggttaGAATTTTTTACGATGGACGAAAGTTTCAGATGGACAACCAAGGGTCTAATTGGTTCTTAAAggtgactatttttatttttttttttttttttctcggcgTGCAAAAATTTCGGCCGAATAACTCGCAATGGCATTAACTTTGAATAAACactctcattaaaaaaagag

Function

NR:

description
CTTNBP2 N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246678.1 True 3284 mRNA 0.46 5 13351816 13369026

Neighbor

gene id symbol gene type direction distance location
LOC122350377 LOC107562778,LOC107717538,LOC107669657,LOC107711943,LOC107679735,LOC107591842 coding downstream 52841 13286754 ~ 13298975 (-)
mov10b.2 mov10b.2,LOC107711942,LOC107679724,LOC107591756,LOC107717538 coding downstream 65138 13276193 ~ 13286678 (-)
slc16a1b slc16a1b,LOC107669643,LOC107717534,LOC107591766,LOC107711946,LOC107679710,LOC108425094 coding downstream 287293 13045401 ~ 13064523 (-)
kazna kazna,LOC107669642,LOC107556484,LOC107591771,LOC107711950,LOC107717500,LOC107680131 coding downstream 369594 12948703 ~ 12982222 (-)
tmem51a tmem51a,LOC107717531,LOC107669600,LOC107556479,LOC107679674,LOC107711951,LOC107591770 coding downstream 403225 12942690 ~ 12948591 (-)
ddx20 ddx20,LOC107669638,LOC107751451,LOC107594523,LOC107711848,LOC107679786,LOC107556298 coding upstream 156547 13525573 ~ 13531588 (-)
rap1aa rap1aa,rap1a,LOC107594522,LOC107679791,LOC107556321,LOC107751450,LOC101074250 coding upstream 176280 13545306 ~ 13551399 (-)
LOC122350013 NA coding upstream 183442 13552468 ~ 13558463 (-)
LOC122350012 NA coding upstream 189855 13558881 ~ 13561981 (-)
LOC122350644 LOC107556303,LOC107669603,LOC107751461,LOC107679797,LOC107711850,LOC107594521 coding upstream 193930 13562956 ~ 13570832 (-)
G63751 NA non-coding downstream 1545 13347624 ~ 13350271 (-)
G63745 NA non-coding downstream 19429 13332164 ~ 13332387 (-)
G63735 NA non-coding downstream 76948 13261692 ~ 13274868 (-)
G63711 NA non-coding downstream 220599 13128190 ~ 13131217 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 551073 12797379 ~ 12800743 (-)
LOC122350567 NA non-coding upstream 250966 13619992 ~ 13682456 (-)
G63866 NA non-coding upstream 319152 13688178 ~ 13693222 (-)
G63867 NA non-coding upstream 330631 13699657 ~ 13700068 (-)
G63868 NA non-coding upstream 342129 13711155 ~ 13712401 (-)
G63873 NA non-coding upstream 354705 13723731 ~ 13724000 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 105686 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 268444 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 847663 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 988712 12342160 ~ 12363104 (-)
G63385 NA other downstream 1087283 12263694 ~ 12264533 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 347602 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 440402 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 1016574 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 1354686 14723712 ~ 14731391 (-)
G64228 NA other upstream 1410505 14779531 ~ 14781710 (-)

Expression


Co-expression Network