XLOC_000705 (triobpa)


Basic Information

Item Value
gene id XLOC_000705
gene name triobpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54037077 ~ 54062112 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001178
GCCTCCCATCCTATAGGAGGCGCTATGACAATCTCAGTGAGCAGGCAATAAGTGGCCTCTCCCCCCAGCGACACATGAGTTATTCAAATTTCAGACGTGGAGACAGCCAATCACGTGCAAGCCCTCGCTCTGGCAGCCCGAGATCTACAAACATCTCTCCACAGAGGCGAGGGGAATCGCGAAGTTCGTCTTATCGGAGAGGCTCTTCTACACACGGTCATCGTATGTCCTCTCAGCAGGCTTCAGGTAAATGCACGCCATCACGAAGACGGGATTCGATAGCCACGCGCACCTCATCGCCTTCACGAAGCTCAGGTACAAATAAATATGCAGATTCCTATAGCCCCGCCCACAAAAGAAGCCCCTCCCAGAGCTCCTACGGGCACAGCTTGGATTCAGAAAAGCTGTATAAGAATCTCAAATCAATTGTGAGTTCGGCAGAATCAGACGGATATGATGAAAGAAATGGCTGGTCAAAAAGAATACAGTCTGATGACGGTGGTTATAACGAACGCAACCACAGCGGTCGCAGTAGTCGAAAAAGTGGTAGTCACAGATCTGGCTACAACAGCCGGGATTTCTCACCAACCGGAAGCAATTGTGACACAATTAAAAGTCGAAATACTGGTCGCAACAGCAGAAATAGTGGTGCCTCGACACCTCATCGAAATTACGATGAACGTGATACTGTGAAAAATAGTACGTCAAAAAATAAGAGTCGCAGGAATGAGGTTTACTCGGATATCTCGGACAAACAATCCAAATCTGATTCGCGTCAATCACTAAGTCCCACCCACTCTCCTCTAAGCCCCACCTCCCCAGCATCAACACCAAGCATTGCTCAATCAAGGCGGAGTCGAAATCAGGCACCGACGCCAGATTTGACCAAATCACAAACCTTAACTCCAGAGACGGACAAGCCAGCTATTGATCGGAGCAGAAGCAACATCAGGCGTGGCTTAGAGGCGCTAATCCTTTCAGAAAACCCCAGGTCTTCCAGCCAACCAGCAGTGCCAGAAATGACCATCGAGGACTATGTGATCATAGCAGATATTCCCAGATCAAAGCTGTACCCTGAAGAAGAGGAAGCAATAATAGTGAGGAGGAGGCCACAGAGCCGGAGCCCACGCAGAGACAATCAGCACAGTTATGAGGATGGGAGATATGGCTATGAGCATGAGGTTTCTGAAGAGCGTGGCAGAGGAAGGGAAAGAGAGCGAGGAAGAGACCGCAGAGAGAAAGAGCGGAGACGTCTAGACAAAGAGATGGGAGGGTCGTCAAAAGCCAACAGCACCACGTCAGGCCATTCACAGAAGTCCAATAAAAATGGAGACATTAGGATGACAAACGGAGGACACAGAGGTCAAGAAAAGCCCCCTCCTATGCAGGGATGGATGTATTTGCTGGATGAAGATGAGGAGTGGAGAAAGTTCTGGTTTGTGATCACTGACTCTGGATTAAGATACTATAGGGACTCTGAGGCTGAAGAGAGAGATGAAGCAGATGGTGAGGTTTACTTGCGCCATTGTTTGCGAGTGGAGGAATTTGATGCAGACAAAAACTATGGACTTCAGTTGCATATGCGCGATGGACTGGTGACGCTGTCGGCGATGACCTCCAGAATCAGGAGGAACTGGATCGACACTTTGAGGAGGAAAATCTCCTTCAGGGATTCAGCGGACAGCATACAACACCTAGACAACAGTGACATCAGTGACAGAGAAAACTCCAGTTCCCAGAATGCACCATCACAAACCTCTCCTGCGCCTCGTGAGCCGTGCTCAGATGATGGTGGTTTGTATGAAGATGAACCCGACATCACTTGCTCTCCTTTAACCAATCGTAGAGAAGCAGGCGAGGGTCGGGACCGAGAGCATGAGCGGCGTCTGGAGGACCGAACCAAGTGGTTCCAGGAGGGGGTTTCCGACAGGGAGGGCGACGATCCGTGGGATAAAGTGGAGCTGAAGAAAGGGGGCACTCCAGTGGTTTTGACCCAGCTGCAGGTTCCTAAAGCCAAGACGGGGCCCGACATCGAGAAGAAGTGGGAAGACTTTGAGCAGCTTCCAATTGGAGAGAAAAGGTCACTGGTCGGTTCCCAGAATCCACAAGCGGCAAATGAGGCCCTTCAGAGAGAGGTGTTGTCTCTGAGGCAGCAGATCGAGTCTCTCCGTCAGGTGCGTGTCGGAGCTCTCTGTGGTCCTGAAGCTCCCTGCGCTCTCAGACTGCAGCAGATGGAGGAAGAGCACAGAGAGAGACTGAAGGAGATTCATGAGCAACATGAGCGAGAGCGCAGAGACATGGAGACTGAAAAACAGAGGCTGCTGCAGGAGGAGGCCAAAAACACACTCCAGGCTATGGAGGCTCTGAGGAAAACACACCAGGAGGAGATCGAGAGGCTGAAGGGTCACGGAGGAGAAGAGTTAACAGACCCGTCCATCAAACAACAgctgcaTGAGTCTCTGTCTCTGCAGCGTGAGCTGGATGGTCTGTCGCAGCGTTACTCGCAGCAGTGTGTGGAGCTCAACCGCATCCAGAGCGGCACTGACGAGAGAGACGGACAGATCCGACAGAAGGAGAGAGACATGGAGCAGCTCCGCATGGAGAACCAGGAACTGCAGGCGCGTCTGACGGAGGAGATAAGCCTCATGCGATCCTTCATCACAGGTCAAAGGTCAGGCGTTGTTCCCCTTGGCAGCTACGAAAGAAGCACCTCCGAATTGGAGatgttaCTGAAGGTGAAGGAGAGCGAGGTGGAGTTTCTGCACAAGGAGATCAGCTGTCTCAGGAAAGAGGTCCAGACTCTCACTAAGGAGAATGAAGCGTTGGGCGAGCGCTATAAAGAGGTCTATGTGGAGCTGAGCGAGTTAAGAGGCCGCAGTGAGAGAGACATCAACGCACTCAAACAACACCTCAAACTCACTGACGCGGCTCTGGAGGAGGGCCGTCTCCTGGGCAACAGCGACAACCAATGAGAACGCAGCATCACTTCACATGCAAACATTAGCACTGGGACGCTTTCTGTTATGAGGAATTCATTTTTGTTAGAAACTACAATGGTGCTAAATATCGGAAACTCTTAAagcaaaatatgtatataaacatgCCTCTGTTGAGAGTATGTATTTTGATCGTTATgtgaaaataaacacaaatccaGACCA
>TCONS_00001179
AGAGATGCTAGTTTAGTCACGCAGGGATAATTTAACCAGTTTGTAttcatagatatttataaaaGCACTATTTCAATGCGGAAACTGCTTAAATGACCGCGAATATGTATGTATTCAATATACGACTAGATCGTCGAGCAGTTCTATGACAACATACTTGCAGGAATTGAGCAACTAAACCAGTTTCTTCCTTCTTTCATGCCAACATCCGGATACACACATGTCGGTTGACCTTCTGAACGGTAAAAAGGGATGGATGTATTTGCTGGATGAAGATGAGGAGTGGAGAAAGTTCTGGTTTGTGATCACTGACTCTGGATTAAGATACTATAGGGACTCTGAGGCTGAAGAGAGAGATGAAGCAGATGGTGAGGTTTACTTGCGCCATTGTTTGCGAGTGGAGGAATTTGATGCAGACAAAAACTATGGACTTCAGTTGCATATGCGCGATGGACTGGTGACGCTGTCGGCGATGACCTCCAGAATCAGGAGGAACTGGATCGACACTTTGAGGAGGAAAATCTCCTTCAGGGATTCAGCGGACAGCATACAACACCTAGACAACAGTGACATCAGTGACAGAGAAAACTCCAGTTCCCAGAATGCACCATCACAAACCTCTCCTGCGCCTCGTGAGCCGTGCTCAGATGATGGTGGTTTGTATGAAGATGAACCCGACATCACTTGCTCTCCTTTAACCAATCGTAGAGAAGCAGGCGAGGGTCGGGACCGAGAGCATGAGCGGCGTCTGGAGGACCGAACCAAGTGGTTCCAGGAGGGGGTTTCCGACAGGGAGGGCGACGATCCGTGGGATAAAGTGGAGCTGAAGAAAGGGGGCACTCCAGTGGTTTTGACCCAGCTGCAGGTTCCTAAAGCCAAGACGGGGCCCGACATCGAGAAGAAGTGGGAAGACTTTGAGCAGCTTCCAATTGGAGAGAAAAGGTCACTGGTCGGTTCCCAGAATCCACAAGCGGCAAATGAGGCCCTTCAGAGAGAGGTGTTGTCTCTGAGGCAGCAGATCGAGTCTCTCCGTCAGGTGCGTGTCGGAGCTCTCTGTGGTCCTGAAGCTCCCTGCGCTCTCAGACTGCAGCAGATGGAGGAAGAGCACAGAGAGAGACTGAAGGAGATTCATGAGCAACATGAGCGAGAGCGCAGAGACATGGAGACTGAAAAACAGAGGCTGCTGCAGGAGGAGGCCAAAAACACACTCCAGGCTATGGAGGCTCTGAGGAAAACACACCAGGAGGAGATCGAGAGGCTGAAGGGTCACGGAGGAGAAGAGTTAACAGACCCGTCCATCAAACAACAgctgcaTGAGTCTCTGTCTCTGCAGCGTGAGCTGGATGGTCTGTCGCAGCGTTACTCGCAGCAGTGTGTGGAGCTCAACCGCATCCAGAGCGGCACTGACGAGAGAGACGGACAGATCCGACAGAAGGAGAGAGACATGGAGCAGCTCCGCATGGAGAACCAGGAACTGCAGGCGCGTCTGACGGAGGAGATAAGCCTCATGCGATCCTTCATCACAGGTCAAAGGTCAGGCGTTGTTCCCCTTGGCAGCTACGAAAGAAGCACCTCCGAATTGGAGatgttaCTGAAGGTGAAGGAGAGCGAGGTGGAGTTTCTGCACAAGGAGATCAGCTGTCTCAGGAAAGAGGTCCAGACTCTCACTAAGGAGAATGAAGCGTTGGGCGAGCGCTATAAAGAGGTCTATGTGGAGCTGAGCGAGTTAAGAGGCCGCAGTGAGAGAGACATCAACGCACTCAAACAACACCTCAAACTCACTGACGCGGCTCTGGAGGAGGGCCGTCTCCTGGGCAACAGCGACAACCAATGAGAACGCAGCATCACTTCACATGCAAACATTAGCACTGGGACGCTTTCTGTTATGAGGAATTCATTTTTGTTAGAAACTACAATGGTGCTAAATATCGGAAACTCTTAAagcaaaatatgtatataaacatgCCTCTGTTGAGAGTATGTATTTTGATCGTTATgtgaaaataaacacaaatccaGACCA
>TCONS_00001180
tcgaaaccggtcgccgtggtcgaccccttctctgcatctcgagcctgccgacgtacacgctgagctgagtggacgaacaggttgcagcggggaagccctctacaaggaggcaTGAGTCTCTGTCTCTGCAGCGTGAGCTGGATGGTCTGTCGCAGCGTTACTCGCAGCAGTGTGTGGAGCTCAACCGCATCCAGAGCGGCACTGACGAGAGAGACGGACAGATCCGACAGAAGGAGAGAGACATGGAGCAGCTCCGCATGGAGAACCAGGAACTGCAGGCGCGTCTGACGGAGGAGATAAGCCTCATGCGATCCTTCATCACAGGTCAAAGGTCAGGCGTTGTTCCCCTTGGCAGCTACGAAAGAAGCACCTCCGAATTGGAGatgttaCTGAAGGTGAAGGAGAGCGAGGTGG

Function

symbol description
triobpa Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and positive regulation of substrate adhesion-dependent cell spreading. Predicted to be active in actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 28. Orthologous to human TRIOBP (TRIO and F-actin binding protein).

GO:

id name namespace
GO:1900026 positive regulation of substrate adhesion-dependent cell spreading biological_process
GO:0007015 actin filament organization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-40 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and positive regulation of substrate adhesion-dependent cell spreading. Predicted to be active in actin cytoskeleton. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 28. Orthologous to human TRIOBP (TRIO and F-actin binding protein).

Ensembl:

ensembl_id ENSDARG00000075870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001178 False 3161 mRNA 0.51 14 54037077 54062112
TCONS_00001179 False 2023 mRNA 0.50 12 54043563 54062112
TCONS_00001180 True 414 processed_transcript 0.58 4 54053104 54061210

Neighbor

gene id symbol gene type direction distance location
XLOC_000704 dla coding upstream 10725 54013457 ~ 54026352 (+)
XLOC_000703 NA coding upstream 48301 53982614 ~ 53988776 (+)
XLOC_000702 ccsapa coding upstream 73144 53954230 ~ 53963933 (+)
XLOC_000701 acta1a coding upstream 83545 53945934 ~ 53953532 (+)
XLOC_000700 nup133 coding upstream 95171 53919110 ~ 53941906 (+)
XLOC_000706 dcaf15 coding downstream 7338 54069450 ~ 54084665 (+)
XLOC_000707 rln3b coding downstream 53727 54115839 ~ 54118052 (+)
XLOC_000708 LO017722.1 coding downstream 62097 54124209 ~ 54126428 (+)
XLOC_000709 TNPO2 coding downstream 74977 54137089 ~ 54146461 (+)
XLOC_000710 CABZ01067150.1 coding downstream 123927 54186039 ~ 54186156 (+)
XLOC_000699 NA non-coding upstream 171240 53864528 ~ 53865837 (+)
XLOC_000697 NA non-coding upstream 266338 53760797 ~ 53770739 (+)
XLOC_000695 NA non-coding upstream 341522 53688977 ~ 53695555 (+)
XLOC_000694 NA non-coding upstream 378788 53656231 ~ 53658289 (+)
XLOC_000712 NA non-coding downstream 215131 54277243 ~ 54469289 (+)
XLOC_000713 NA non-coding downstream 339821 54401933 ~ 54404147 (+)
XLOC_000715 NA non-coding downstream 549726 54611838 ~ 54613479 (+)
XLOC_000721 NA non-coding downstream 636061 54698173 ~ 54700755 (+)

Expression


Co-expression Network