LOC122350320 (prf1.5,LOC107751453,LOC107574770,LOC107594505,LOC107711865,LOC107679935)


Basic Information

Item Value
gene id LOC122350320
gene name prf1.5,LOC107751453,LOC107574770,LOC107594505,LOC107711865,LOC107679935
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 14181532 ~ 14186141 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246692.1
TGTCATCAACATCCTGTTTGATTTATCTTGACCGTGCACTTGCACTTCAATTCCCTCTGCGAAGTCTCGTGAGAACCCTCCCCCACTGCACAGCTGGTattcactaaaaaaagaaaagaaaaaaaatcaaaacaaaaccagtcagcgGATGAAATCTGTCCGGCACAGAAGAAAAGGGCTGACAGGAAGATACTCCCTCCAACAAATACCACATACTCAGTCTTCACAGTGCTCCTTTTTAGCATAAGCATTCCAGAAACGCACTCCAGGGCAAAAACGTTTCATGAAGAAAGTATAATTTGAAAAGAAGGATTTTTCTAAAGTAGGTCAATATGGTGGTATGACACAGCTGGAAAAGACTGCTGCACGAAAGCTTTTCTTGACATCATCATGGAGACAAATCACTGCGCTTTCCGCATCTTCTTCTGCATTTCTCTGATCTTgacccactggcacacagcttcTGCTTGCCACACAGGCTCTCAGGTAGAGTGTGAGAAAGCCCCATTTGTGCCGGGTTACAACCTGGTGGGCGAAGGCTTCGATGTTGTCAGGATGCGCCGTAAAGgtgcatttttgattaatgtgAAGTCGCACATGGATAATGGCACTTGTACGGTCTGCAAAAACCGCTTTCAAGGAGGGCAGATACAGAAACTTCCCTCAGCTGTGCTGGACTGGCGTCCCTTCAGCCGCTGCAGCAAACAGCTTTCTAGTGCTCTTCATCATTCTGTTGACTCCCTAATGAAGAGTTCGACATCGCTCATCAATAACAACTGGGAAATTGACCTAAATCTGGATGACATGGGAAAGGCAATTTTTGGAGGGAGCCGTTCAGATATTGCCAAATTTGCTCAGTCTCAGAATGCAATGGACAAGGCGACGTTTGCCCTCCATGAGCTCAGCTGCACATACTACAGTTACAGAGTTACGGACAACCCACAGCTCAGCAATGAATTCTCAAAACACCTCCAGCGACTTCCAACACAATACGATGAGAGAACAAGACCCCTGTACCGAAGAACTATAGATACTTACGGCACTCACTACATACGACAAGTCCACCTGGGAGGGCGAGTGAGGCGGGTCACGGCTTTTCGAACTTGTCTTGCGACCCTCAAGGGCTTCTCAGAGACCGATATCAAGAACTGCCTGAATATTGAGTTAAAGATGACTTTGGGATTCCTTCCAGCTAACGCTTCGCTTTCCAACAAATGCTCTCAAATCCTTAAAGATAACATGAGCATGGGATTCTACCAGGGCTTCATGACGCACAAGATAGAGGTGCTGGGAGGTGAGAAATACTTTCCAGAACTAGTTTTAAACCAAAGCCCAGCTGAAGCGTACTCCAACTGGATGATGAGCTTGCATGACAATCCTGAAGTCATATCGTACGCAATATTCCCTCTCCATCATCTGGTGGCGGATCCTGAGGTTAGCGTCAACCTGAAAAGCGCAGTAACTGAGTATATCGAAGAGAACGTCCTTTCTGTAGGTCGCGAGGAGATTCAAGGTTGCTCGCGAACACCGAATCTGGATCACAACTGCTGTCCCATGCGAGCCGGCCGCGGGAGGTTAGCGGTGTCTGTGCAGAGAGCCGCGGGCCTGAAAGCAGACCTCTTCACGCGTACCGATGGTTACGTGAAGGTTTGGTACAACCTGATGTACGAAGAGACTGAGGTGGTGATGGACAATAACGATCCCGAATGGAACATCAGCTATGATTATGGATCTATTGAGTTTGGTCACGAACTCATATTTGAGGTTTGGGACAGTGACGTCATTTATAATGACATGGTGGGGAGATGCGTGGTCAGCCCTGAACATGGGACTCATTCGCACAGCTGCAAATTAAAGAGAGGCATCCTGTATTTTACTTACAGTGCTTCTTGTGACGCTCATCTGACTGGACCCAGGTGTAGCAGATATTCCCCAAAAACATAGAACCTTGTAAATGTAACTAACAATACATCCTTAACAACATAAAGTATACCGTTAGCAACACTCACATCttcaatatcatttttttatataaatctaatgttaaaatgtaatagcAAATGATGAAAagcatatttgcatattgttggtttgatgtgtgtttttgtgtttgttatgtaacaaagtgaaattaataataaaatcttttgtCGCCGTTTTGTTCTTTTGCAGATGTTAACAATAAGGCATGAAAACTATCAGTAAAATCACGGCCTGATGCGGAATAAACCAAAgcattcaaataatattttttctttagcattttattttacaatcacttttatttacgCAAGGGTAAACAGACAGTAGATGTGCTTTCCTGgtaattcatattaaatatcttACCTACAGGCAAATAATTGGTAAGAAAAAGTACCTGAAGTGAATGTAGCAGAACCTGCTTTTGCTGAGTTCGACGTGTTCCCAGATTAATATCTTTGTTGACTCTGAAACAACATTGTGATATAAAGAACAAGTTTTCTAAAGAATATTATCTGCTGATGTGCCAGCTGTATTTGAGGACTGaggtgtattgtgtgtgtgcatgccaTGTCAGCGTCTCTTTTGCTCTAACGCTGACAGCTGCTTTTTGACGATGTCTAACGCATCTCTGATGGTTAATGTATTTCGTTTCATGTATTTTGACTTTGGCAAAAATAAAGTTGCTTTTAATTGAATCAACACG
>XM_043246693.1
TTTGTCATCAACATCCTGTTTGATTTATCTTGACCGTGCACTTGCACTTCAATTCCCTCTGCGAAGTCTCGTGAGAACCCTCCCCCACTGCACAGCTGGTattcactaaaaaaagaaaagaaaaaaaatcaaaacaaaaccagtcagcgGATGAAATCTGTCCGGCACAGAAGAAAAGGGCTGACAGGAAGATACTCCCTCCAACAAATACCACATACTCAGTCTTCACAGTGCTCCTTTTTAGCATAAGCATTCCAGAAACGCACTCCAGGGCAAAAACGTTTCATGAAGAAAGTATAATTTGAAAAGAAGGATTTTTCTAAAGTAGGTCAATATGGTGGTATGACACAGCTGGAAAAGACTGCTGCACGAAAGCTTTTCTTGGTAGGTAAAAACTTGACATCATCATGGAGACAAATCACTGCGCTTTCCGCATCTTCTTCTGCATTTCTCTGATCTTgacccactggcacacagcttcTGCTTGCCACACAGGCTCTCAGGTAGAGTGTGAGAAAGCCCCATTTGTGCCGGGTTACAACCTGGTGGGCGAAGGCTTCGATGTTGTCAGGATGCGCCGTAAAGgtgcatttttgattaatgtgAAGTCGCACATGGATAATGGCACTTGTACGGTCTGCAAAAACCGCTTTCAAGGAGGGCAGATACAGAAACTTCCCTCAGCTGTGCTGGACTGGCGTCCCTTCAGCCGCTGCAGCAAACAGCTTTCTAGTGCTCTTCATCATTCTGTTGACTCCCTAATGAAGAGTTCGACATCGCTCATCAATAACAACTGGGAAATTGACCTAAATCTGGATGACATGGGAAAGGCAATTTTTGGAGGGAGCCGTTCAGATATTGCCAAATTTGCTCAGTCTCAGAATGCAATGGACAAGGCGACGTTTGCCCTCCATGAGCTCAGCTGCACATACTACAGTTACAGAGTTACGGACAACCCACAGCTCAGCAATGAATTCTCAAAACACCTCCAGCGACTTCCAACACAATACGATGAGAGAACAAGACCCCTGTACCGAAGAACTATAGATACTTACGGCACTCACTACATACGACAAGTCCACCTGGGAGGGCGAGTGAGGCGGGTCACGGCTTTTCGAACTTGTCTTGCGACCCTCAAGGGCTTCTCAGAGACCGATATCAAGAACTGCCTGAATATTGAGTTAAAGATGACTTTGGGATTCCTTCCAGCTAACGCTTCGCTTTCCAACAAATGCTCTCAAATCCTTAAAGATAACATGAGCATGGGATTCTACCAGGGCTTCATGACGCACAAGATAGAGGTGCTGGGAGGTGAGAAATACTTTCCAGAACTAGTTTTAAACCAAAGCCCAGCTGAAGCGTACTCCAACTGGATGATGAGCTTGCATGACAATCCTGAAGTCATATCGTACGCAATATTCCCTCTCCATCATCTGGTGGCGGATCCTGAGGTTAGCGTCAACCTGAAAAGCGCAGTAACTGAGTATATCGAAGAGAACGTCCTTTCTGTAGGTCGCGAGGAGATTCAAGGTTGCTCGCGAACACCGAATCTGGATCACAACTGCTGTCCCATGCGAGCCGGCCGCGGGAGGTTAGCGGTGTCTGTGCAGAGAGCCGCGGGCCTGAAAGCAGACCTCTTCACGCGTACCGATGGTTACGTGAAGGTTTGGTACAACCTGATGTACGAAGAGACTGAGGTGGTGATGGACAATAACGATCCCGAATGGAACATCAGCTATGATTATGGATCTATTGAGTTTGGTCACGAACTCATATTTGAGGTTTGGGACAGTGACGTCATTTATAATGACATGGTGGGGAGATGCGTGGTCAGCCCTGAACATGGGACTCATTCGCACAGCTGCAAATTAAAGAGAGGCATCCTGTATTTTACTTACAGTGCTTCTTGTGACGCTCATCTGACTGGACCCAGGTGTAGCAGATATTCCCCAAAAACATAGAACCTTGTAAATGTAACTAACAATACATCCTTAACAACATAAAGTATACCGTTAGCAACACTCACATCttcaatatcatttttttatataaatctaatgttaaaatgtaatagcAAATGATGAAAagcatatttgcatattgttggtttgatgtgtgtttttgtgtttgttatgtaacaaagtgaaattaataataaaatcttttgtCGCCGTTTTGTTCTTTTGCAGATGTTAACAATAAGGCATGAAAACTATCAGTAAAATCACGGCCTGATGCGGAATAAACCAAAgcattcaaataatattttttctttagcattttattttacaatcacttttatttacgCAAGGGTAAACAGACAGTAGATGTGCTTTCCTGgtaattcatattaaatatcttACCTACAGGCAAATAATTGGTAAGAAAAAGTACCTGAAGTGAATGTAGCAGAACCTGCTTTTGCTGAGTTCGACGTGTTCCCAGATTAATATCTTTGTTGACTCTGAAACAACATTGTGATATAAAGAACAAGTTTTCTAAAGAATATTATCTGCTGATGTGCCAGCTGTATTTGAGGACTGaggtgtattgtgtgtgtgcatgccaTGTCAGCGTCTCTTTTGCTCTAACGCTGACAGCTGCTTTTTGACGATGTCTAACGCATCTCTGATGGTTAATGTATTTCGTTTCATGTATTTTGACTTTGGCAAAAATAAAGTTGCTTTTAATTGAATCAACACG

Function

symbol description
prf1.5 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis. Is expressed in gill; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

NR:

description
PREDICTED: perforin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246692.1 False 2686 mRNA 0.43 3 14181532 14186139
XM_043246693.1 True 2703 mRNA 0.43 3 14181532 14186141

Neighbor

gene id symbol gene type direction distance location
LOC122350319 LOC107574771,LOC107751454,LOC107669655 coding downstream 5709 14173054 ~ 14175823 (-)
cebpb cebpb,LOC107556312,LOC107669676,LOC107751442,LOC107594515,LOC107679873,LOC107711812 coding downstream 540050 13639945 ~ 13641482 (-)
adipor1b adipor1b,LOC107751445,LOC107679819,LOC107594512,LOC107711855 coding downstream 566194 13608854 ~ 13615338 (-)
LOC122351021 klhl12,LOC107679803,LOC107556315,LOC107711853,LOC107751446,LOC107594517 coding downstream 573255 13599250 ~ 13608277 (-)
tuba5 tuba8l,LOC108265838,LOC108425079,LOC107679810,LOC107711852,LOC107594520,LOC103031418 coding downstream 583685 13593701 ~ 13597847 (-)
mpeg1.1 mpeg1.1,LOC107724877,LOC107669601,LOC107602834,LOC107679909,LOC107724864,LOC107751428,LOC107602817 coding upstream 1288 14187429 ~ 14190244 (-)
LOC122349900 LOC107724883,LOC107580262,LOC107669607 coding upstream 7692 14193833 ~ 14194501 (-)
slc20a2 slc20a2,LOC107724891,LOC107669617,LOC107602837,LOC107594502,LOC107711867 coding upstream 39215 14225356 ~ 14259044 (-)
ercc6l2 LOC107669670,LOC107724913,LOC107602840,LOC107689281 coding upstream 87395 14273536 ~ 14285846 (-)
dock8 dock8,LOC107724900,LOC107711870 coding upstream 269286 14455427 ~ 14493418 (-)
G63955 grid2,LOC107568412,LOC107751431,LOC107594506,LOC107680191,LOC107711862 non-coding downstream 44109 14131391 ~ 14137423 (-)
G63956 grid2,LOC107669587,LOC107711862,LOC107751431,LOC107680191 non-coding downstream 53110 14128189 ~ 14128422 (-)
G63963 NA non-coding downstream 63530 14117730 ~ 14118002 (-)
G63962 grid2,LOC107669587,LOC107751431,LOC107711862,LOC107680191 non-coding downstream 81381 14099665 ~ 14100151 (-)
G63944 NA non-coding downstream 118792 14062497 ~ 14062740 (-)
G63975 NA non-coding upstream 16905 14203046 ~ 14203270 (-)
G63976 NA non-coding upstream 17501 14203642 ~ 14203921 (-)
G63979 NA non-coding upstream 79031 14265172 ~ 14265635 (-)
G63980 NA non-coding upstream 79585 14265726 ~ 14266043 (-)
G63981 NA non-coding upstream 82463 14268604 ~ 14269763 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other downstream 318282 13809428 ~ 13863250 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other downstream 461018 13716628 ~ 13720514 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other downstream 935402 13185867 ~ 13246130 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other downstream 1098160 12985654 ~ 13083372 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 1677379 12489197 ~ 12504153 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 199459 14385600 ~ 14455243 (-)
slc20a1a slc20a1a,LOC107724894,LOC107711884,LOC107686402,LOC107667554,LOC107602858,LOC108440301 other upstream 537571 14723712 ~ 14731391 (-)
G64228 NA other upstream 593390 14779531 ~ 14781710 (-)
G64353 hmcn2,LOC107723245,LOC107659581,LOC107570300 other upstream 1097720 15283861 ~ 15284130 (-)
mvb12bb mvb12b,LOC107550570,LOC107753158,LOC107723228 other upstream 1463085 15649226 ~ 15700896 (-)

Expression


Co-expression Network