csf1b (csf1b,LOC107683886,LOC107747213,LOC107702844)



Basic Information


Item Value
gene id csf1b
gene name csf1b,LOC107683886,LOC107747213,LOC107702844
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 19464595 ~ 19476656 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043246701.1
gtgtgggCTTGAAAAGGCGGAGAAGAAGTTAATGAAAAAGACCAGGAGGGGGTGAAGGGAgaggacacagagagagagttcCTCAAAACATCACCTGGATCTGCTCAAATGCATCTAACTGAGGACTGTAGACTTCTCCTGCTGGATCGGTGAGCCAGATGAACAACTTTACACCCCTTCACTTCTACAGAACCAAGGGGAAGAATGTGTGTGTTCTCATGCTACTGTGTGTTCCCCTCTCCATGATGGACATCCCTGGTCCTTGCAAACATGCCATAACCATGGACCACCTGCTACAACTAAAACAACTAAACTGTCTTTTTATCCTTCAGATCAGTAATCAGCTGCGGACTGGCTGTTCAATCACATATACATTCATAGAAAGAAAACACCTGAGCGTGGTGTGTTATGTCAAAGCTGCTCTGCCAAGGGTGCTCGAACTGTTTAACGTCCACTTCAGATACGTGCGGGGCTCGGGAAGCGCTCAAGCTGTGGTCTCCATACAGAACCTCATTCTCAACTTCTACTCCCAACACTGCATACCGTCACTGGACGAGCAactggagGAGGACCCTGTAGCATTCGAGAGGCAATACAAAGAGTCTCCTGTCCAAGCACTTCAAAGAGTCGAGGAGGTTCTGTCCCTCTACTTGCACCTCATCACAACCGCAAACACTCCTGTTAACTGGACCTGCGAGCAAGAGTATAGCAGCAATCTACCCTCTACTGTAACACAGCTAACCACCAGcacagAGGTTGCGGTAGGATCGTTCGGGCAAGATCCTCAGGAGTCGTTCAGCGATGATTTCTACAGGCTGGGCTTCATTGTGGTCTCCATCTGTGGAGGATTTCTTATTTTACTCACTGCCTACTGCCTCCTAGAGAGAAAGAAGCTTCAGCGTCAGCTTCACAGAACAACAATGTCATCAGATTGGGGATTGCATGTTGTTGAAAACTTTAAAATCCAAGATGAAGAATACGAGATGAATGACCAACGGACACAGCTTGGCTTACACCTCTCCACTGTCTTCTAACTGATGTGACTTTTCTGGATGCTTACAAGAGAGTATAAACAGTTAAAATAGACTGTGTACTTCAGAAAGACTATGATCATGACAAGAGGAAACAGAACTGACTAAAAGATATTCTTCCAATTTGTCAAGATAAATCATAAGCTTTGGACCTTGTACATATGTAAATGTGCATATTATTACAAACATCTATTTCTGGACTGCTGGAAAAGTCAATGTATTGCATGCTCAGTAATGCTACAGTTACAAAACACAGGaaaatcattcatttgcaaTTTGTTTTAGTTGGATGACAGTCTATATATTGATGTTATTGTTCATATGTGAGCAGTACCTTACAGTAAAGGCTAAGtttgttaattaa
>XM_043246702.1
agagagaggtgtgggCTTGAAAAGGCGGAGAAGAAGTTAATGAAAAAGACCAGGAGGGGGTGAAGGGAgaggacacagagagagagttcCTGTGAGACACCAGTTGTTTAATCATTGTGCTTGTCAAGAATGTGCTATAAATTCACTTTCTGTCTGCATGTTCATTTTTACCCTGGATCGACTGATTTCTGAGCTTTTCTGTGACTCTGCTTCAACTCTGCACAGCAAAACATCACCTGGATCTGCTCAAATGCATCTAACTGAGGACTGTAGACTTCTCCTGCTGGATCGGTGAGCCAGATGAACAACTTTACACCCCTTCACTTCTACAGAACCAAGGGGAAGAATGTGTGTGTTCTCATGCTACTGTGTGTTCCCCTCTCCATGATGGACATCCCTGGTCCTTGCAAACATGCCATAACCATGGACCACCTGCTACAACTAAAACAACTAATCAGTAATCAGCTGCGGACTGGCTGTTCAATCACATATACATTCATAGAAAGAAAACACCTGAGCGTGGTGTGTTATGTCAAAGCTGCTCTGCCAAGGGTGCTCGAACTGTTTAACGTCCACTTCAGATACGTGCGGGGCTCGGGAAGCGCTCAAGCTGTGGTCTCCATACAGAACCTCATTCTCAACTTCTACTCCCAACACTGCATACCGTCACTGGACGAGCAactggagGAGGACCCTGTAGCATTCGAGAGGCAATACAAAGAGTCTCCTGTCCAAGCACTTCAAAGAGTCGAGGAGGTTCTGTCCCTCTACTTGCACCTCATCACAACCGCAAACACTCCTGTTAACTGGACCTGCGAGCAAGAGTATAGCAGCAATCTACCCTCTACTGTAACACAGCTAACCACCAGcacagAGGTTGCGGTAGGATCGTTCGGGCAAGATCCTCAGGAGTCGTTCAGCGATGATTTCTACAGGCTGGGCTTCATTGTGGTCTCCATCTGTGGAGGATTTCTTATTTTACTCACTGCCTACTGCCTCCTAGAGAGAAAGAAGCTTCAGCGTCAGCTTCACAGAACAACAATGTCATCAGATTGGGGATTGCATGTTGTTGAAAACTTTAAAATCCAAGATGAAGAATACGAGATGAATGACCAACGGACACAGCTTGGCTTACACCTCTCCACTGTCTTCTAACTGATGTGACTTTTCTGGATGCTTACAAGAGAGTATAAACAGTTAAAATAGACTGTGTACTTCAGAAAGACTATGATCATGACAAGAGGAAACAGAACTGACTAAAAGATATTCTTCCAATTTGTCAAGATAAATCATAAGCTTTGGACCTTGTACATATGTAAATGTGCATATTATTACAAACATCTATTTCTGGACTGCTGGAAAAGTCAATGTATTGCATGCTCAGTAATGCTACAGTTACAAAACACAGGaaaatcattcatttgcaaTTTGTTTTAGTTGGATGACAGTCTATATATTGATGTTATTGTTCATATGTGAGCAGTACCTTACAGTAAAGGCTAAGtttgttaattaa
>XM_043246703.1
cgaaagggagagagagagagaggtgtgggCTTGAAAAGGCGGAGAAGAAGTTAATGAAAAAGACCAGGAGGGGGTGAAGGGAgaggacacagagagagagttcCTGTGAGACACCAGTTGTTTAATCATTGTGCTTGTCAAGAATGTGCTATAAATTCACTTTCTGTCTGCATGTTCATTTTTACCCTGGATCGACTGATTTCTGAGCTTTTCTGTGACTCTGCTTCAACTCTGCACAGCAAAACATCACCTGGATCTGCTCAAATGCATCTAACTGAGGACTGTAGACTTCTCCTGCTGGATCGGGGAAGAATGTGTGTGTTCTCATGCTACTGTGTGTTCCCCTCTCCATGATGGACATCCCTGGTCCTTGCAAACATGCCATAACCATGGACCACCTGCTACAACTAAAACAACTAAACTGTCTTTTTATCCTTCAGATCAGTAATCAGCTGCGGACTGGCTGTTCAATCACATATACATTCATAGAAAGAAAACACCTGAGCGTGGTGTGTTATGTCAAAGCTGCTCTGCCAAGGGTGCTCGAACTGTTTAACGTCCACTTCAGATACGTGCGGGGCTCGGGAAGCGCTCAAGCTGTGGTCTCCATACAGAACCTCATTCTCAACTTCTACTCCCAACACTGCATACCGTCACTGGACGAGCAactggagGAGGACCCTGTAGCATTCGAGAGGCAATACAAAGAGTCTCCTGTCCAAGCACTTCAAAGAGTCGAGGAGGTTCTGTCCCTCTACTTGCACCTCATCACAACCGCAAACACTCCTGTTAACTGGACCTGCGAGCAAGAGTATAGCAGCAATCTACCCTCTACTGTAACACAGCTAACCACCAGcacagAGGTTGCGGTAGGATCGTTCGGGCAAGATCCTCAGGAGTCGTTCAGCGATGATTTCTACAGGCTGGGCTTCATTGTGGTCTCCATCTGTGGAGGATTTCTTATTTTACTCACTGCCTACTGCCTCCTAGAGAGAAAGAAGCTTCAGCGTCAGCTTCACAGAACAACAATGTCATCAGATTGGGGATTGCATGTTGTTGAAAACTTTAAAATCCAAGATGAAGAATACGAGATGAATGACCAACGGACACAGCTTGGCTTACACCTCTCCACTGTCTTCTAACTGATGTGACTTTTCTGGATGCTTACAAGAGAGTATAAACAGTTAAAATAGACTGTGTACTTCAGAAAGACTATGATCATGACAAGAGGAAACAGAACTGACTAAAAGATATTCTTCCAATTTGTCAAGATAAATCATAAGCTTTGGACCTTGTACATATGTAAATGTGCATATTATTACAAACATCTATTTCTGGACTGCTGGAAAAGTCAATGTATTGCATGCTCAGTAATGCTACAGTTACAAAACACAGGaaaatcattcatttgcaaTTTGTTTTAGTTGGATGACAGTCTATATATTGATGTTATTGTTCATATGTGAGCAGTACCTTACAGTAAAGGCTAAGtttgttaattaa
>XM_043246704.1
agagagagagagaggtgtgggCTTGAAAAGGCGGAGAAGAAGTTAATGAAAAAGACCAGGAGGGGGTGAAGGGAgaggacacagagagagagttcCTGTGAGACACCAGTTGTTTAATCATTGTGCTTGTCAAGAATGTGCTATAAATTCACTTTCTGTCTGCATGTTCATTTTTACCCTGGATCGACTGATTTCTGAGCTTTTCTGTGACTCTGCTTCAACTCTGCACAGCAAAACATCACCTGGATCTGCTCAAATGCATCTAACTGAGGACTGTAGACTTCTCCTGCTGGATCGGGGAAGAATGTGTGTGTTCTCATGCTACTGTGTGTTCCCCTCTCCATGATGGACATCCCTGGTCCTTGCAAACATGCCATAACCATGGACCACCTGCTACAACTAAAACAACTAATCAGTAATCAGCTGCGGACTGGCTGTTCAATCACATATACATTCATAGAAAGAAAACACCTGAGCGTGGTGTGTTATGTCAAAGCTGCTCTGCCAAGGGTGCTCGAACTGTTTAACGTCCACTTCAGATACGTGCGGGGCTCGGGAAGCGCTCAAGCTGTGGTCTCCATACAGAACCTCATTCTCAACTTCTACTCCCAACACTGCATACCGTCACTGGACGAGCAactggagGAGGACCCTGTAGCATTCGAGAGGCAATACAAAGAGTCTCCTGTCCAAGCACTTCAAAGAGTCGAGGAGGTTCTGTCCCTCTACTTGCACCTCATCACAACCGCAAACACTCCTGTTAACTGGACCTGCGAGCAAGAGTATAGCAGCAATCTACCCTCTACTGTAACACAGCTAACCACCAGcacagAGGTTGCGGTAGGATCGTTCGGGCAAGATCCTCAGGAGTCGTTCAGCGATGATTTCTACAGGCTGGGCTTCATTGTGGTCTCCATCTGTGGAGGATTTCTTATTTTACTCACTGCCTACTGCCTCCTAGAGAGAAAGAAGCTTCAGCGTCAGCTTCACAGAACAACAATGTCATCAGATTGGGGATTGCATGTTGTTGAAAACTTTAAAATCCAAGATGAAGAATACGAGATGAATGACCAACGGACACAGCTTGGCTTACACCTCTCCACTGTCTTCTAACTGATGTGACTTTTCTGGATGCTTACAAGAGAGTATAAACAGTTAAAATAGACTGTGTACTTCAGAAAGACTATGATCATGACAAGAGGAAACAGAACTGACTAAAAGATATTCTTCCAATTTGTCAAGATAAATCATAAGCTTTGGACCTTGTACATATGTAAATGTGCATATTATTACAAACATCTATTTCTGGACTGCTGGAAAAGTCAATGTATTGCATGCTCAGTAATGCTACAGTTACAAAACACAGGaaaatcattcatttgcaaTTTGTTTTAGTTGGATGACAGTCTATATATTGATGTTATTGTTCATATGTGAGCAGTACCTTACAGTAAAGGCTAAGtttgttaattaa

Function


symbol description
csf1b Predicted to enable cytokine activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Is expressed in digestive system; integument; and iridophore. Human ortholog(s) of this gene implicated in interstitial cystitis. Orthologous to human CSF1 (colony stimulating factor 1).

NR:

description
PREDICTED: uncharacterized protein LOC108265008

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K05453 CSF1, MCSF; macrophage colony-stimulating factor 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043246701.1 False 1395 mRNA 0.44 10 19464617 19476656
XM_043246702.1 True 1516 mRNA 0.44 9 19464609 19476656
XM_043246703.1 False 1503 mRNA 0.44 9 19464595 19476656
XM_043246704.1 False 1474 mRNA 0.44 9 19464603 19476656

Neighbor


gene id symbol gene type direction distance location
ren ren,LOC107747224,LOC107727110,LOC107570508,LOC107550929 coding upstream 7839 19451487 ~ 19456756 (+)
kdm5c LOC107747206,LOC107550909,LOC107683899,LOC107570512,LOC107724909,LOC107702826 coding upstream 40783 19406564 ~ 19423812 (+)
iqsec2b iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC107570507,LOC107550910,LOC107725888 coding upstream 59111 19347902 ~ 19405484 (+)
LOC122349946 LOC107747205,LOC107683889,LOC556872 coding upstream 118020 19284717 ~ 19346575 (+)
pold2 pold2,LOC107747204 coding upstream 193725 19267352 ~ 19270870 (+)
mapkapk2b mapkapk2b,LOC107683909,LOC107550950,LOC107726784,LOC107747217,LOC107576554 coding downstream 90623 19567279 ~ 19571233 (+)
fmodb fmodb,LOC107683908,LOC107747218,LOC107726688,LOC107575999,LOC107702840 coding downstream 95655 19572311 ~ 19577890 (+)
LOC122350022 NA coding downstream 105656 19582312 ~ 19583244 (+)
LOC122350024 LOC107683897,LOC107735514 coding downstream 112928 19589584 ~ 19590513 (+)
LOC122350025 LOC107683897,LOC107735514 coding downstream 119922 19596578 ~ 19600117 (+)
G65111 NA non-coding upstream 38873 19424019 ~ 19425722 (+)
G65108 NA non-coding upstream 117551 19183690 ~ 19347044 (+)
G65073 LOC107564452,LOC107733255,LOC107755688,LOC107702821,LOC107733264,LOC107668424,LOC553487,LOC107564453 non-coding upstream 229995 19011933 ~ 19234600 (+)
G65267 NA non-coding downstream 80888 19557544 ~ 19558486 (+)
G65268 NA non-coding downstream 82217 19558873 ~ 19559169 (+)
G65284 NA non-coding downstream 217724 19694380 ~ 19752601 (+)
G65295 rab11fip1,LOC107579780,LOC107683894,LOC107724309,LOC107565115,LOC107740979 non-coding downstream 282814 19759470 ~ 19780752 (+)
G65361 NA non-coding downstream 463451 19940107 ~ 19940869 (+)
pqbp1 pqbp1,LOC107702814,LOC107683912,LOC107747222 other upstream 190825 19272092 ~ 19273770 (+)
LOC122350733 LOC107702875,LOC107722994,LOC107591954,LOC107573969,LOC107722996,LOC107691581 other upstream 262908 19199988 ~ 19201687 (+)
G65105 LOC107747205,LOC107550912,LOC107683889,LOC108412149 other upstream 312290 19119944 ~ 19152305 (+)
G65100 sf3a1,LOC107564451,LOC107550953 other upstream 368524 19094947 ~ 19096071 (+)
si:ch211-158d24.2 si:ch211-158d24.2,LOC107550960,LOC107703181,LOC107676623,LOC107728434,LOC107571139,LOC107753137 other upstream 742349 18695454 ~ 18722246 (+)
rfk rfk,LOC107740987,LOC107723557 other downstream 553378 20030034 ~ 20033607 (+)
timm17b timm17b,LOC107722912 other downstream 658463 20135119 ~ 20139364 (+)
LOC122350816 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC107756821,LOC107566956 other downstream 946625 20423281 ~ 20431832 (+)
rnf122 si:ch1073-392o20.1,rnf122,LOC107747807,LOC107678386,LOC107698113,LOC108440685,LOC107563167 other downstream 1481944 20958600 ~ 20972040 (+)
ankrd39 LOC107721080,LOC107678427,LOC107559444 other downstream 1725792 21202448 ~ 21204346 (+)

Expression



Co-expression Network