zgc:86609 (zgc:86609,LOC107653429,LOC107743102,LOC107601757,LOC107734524,LOC107674347,LOC108265646)


Basic Information

Item Value
gene id zgc:86609
gene name zgc:86609,LOC107653429,LOC107743102,LOC107601757,LOC107734524,LOC107674347,LOC108265646
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 4311724 ~ 4315736 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246708.1
AGTTCAAAGGTCAAAAAGCAGCTGTGCATATGGCGCATGTTCATGCAGTATGTGTCGCTACTGTCGCATAAAAGTTCAGTAGTTTTACTGTAGTTGgagtattaaaataaacttttaaagtgACAGATAGTTTTTTGGTGGGTGACATGGCAGGTCCAGAGCTGCTGCTAGACTCCAGTATTCGTCTGTGGGTCGTTTTGCCCATAGTCTTCATCACATTCTTCGTCGGTGTTTTGCGACATTATGTCACTCAACTGATTCATAACGAGAAGAAAGTGGATCTGCAGCAGGTGTCTGACAGCCAGGTGTTGCTGCGCAGCCGCATCTTGAGGGAAAATGGAAGATATCTTCCCAAACAGTCATTTGCCATGCGAAAACACTATTTCAACAACCCTGAGACTGGGTTCTTCAAGAAGGTCAAAAGAAAGGTGACCCCCAAAAACCCAATGACCGACACCAGCATGCTGACGGACATGATGAAAGGGAACCTGACCAATGTGCTGCCAATGATTCTGATTGGAGGATGGATCAACTGGGCCTTTTCTGGATTTGTCACAACTAAAGTTCCTTTTCCTCTGACTCTGAGATTCAAGCCCATGCTGCAGAGAGGAATTGAGCTCATCTCTCTCGATGCGTCCTGGGTCAGTTCAGCATCATGGTATTTTCTCAATGTGTTTGGGCTCAGAAGCATGTACACCCTCATCCTTGGACAAGACAATGCTGCAGATCAGTCAAGAATTATGCAGGATCAAATGACGGGAGCCGCGATGGCGATGCCACCTGATcctaataaagcatttaaaAGCGAGTGGGAAGCTCTGGAGATTGTGGAGCACAAATGGGCCCTGGAGAACATAGAAGAGGAGCTCATGTGTCAGGATCTAAACTTCAGAGGACTCTTTAGCCAAGAACTGCAGTAAAAACAACCCTATTCTGATGATCGTCTGATTTGAAATCGGCACTGATGTGTTTTTGCCAGAGGTATTAATATACAGAGTTTCTCATGTCTTAAGACCGTATTTATATGCGAAGTAATGCCTATTTTTGGGTTAGTTGTATCCGAAGTGTCCTTAAAATGCCAGTTCGGCTTTCATCTTTGATTAAACAGTCTCTGTCGTGCA

Function

symbol description
zgc:86609 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of EMC complex.

NR:

description
PREDICTED: ER membrane protein complex subunit 3-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K23564 EMC3, TMEM111; ER membrane protein complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246708.1 True 1121 mRNA 0.44 8 4311724 4315736

Neighbor

gene id symbol gene type direction distance location
abt1 LOC107743137,LOC107601758,LOC107653431,LOC107727410 coding downstream 82184 4226724 ~ 4229540 (-)
cdk16 cdk16,LOC107674341,LOC107584883,LOC107653433,LOC107601769 coding downstream 96345 4185253 ~ 4215379 (-)
tsr2 tsr2,LOC107727422,LOC107674353,LOC107653434,LOC107743119 coding downstream 126813 4182347 ~ 4184911 (-)
mecp2 LOC107701822,LOC107743113,LOC107552216,LOC107584876 coding downstream 389773 3909433 ~ 3921951 (-)
irak1 irak1,LOC107701821,LOC107674316 coding downstream 402838 3899367 ~ 3908886 (-)
slc6a8 slc6a8,LOC107734513,LOC103036862,LOC107653404,LOC108441094 coding upstream 117246 4432982 ~ 4466057 (-)
plxna3 plxna3,LOC107734520,LOC107653403,LOC107743094,LOC107674285,LOC106572068 coding upstream 194333 4510069 ~ 4655469 (-)
ptpn18 LOC107743092,LOC107653414,LOC107601761,LOC107734536,LOC107674370,LOC107584895 coding upstream 358590 4674326 ~ 4689480 (-)
si:dkey-8e10.3 si:dkey-8e10.3,LOC107743123,LOC107601742,LOC107674312,LOC107734510,LOC107653415,LOC107584926 coding upstream 538050 4853786 ~ 4860301 (-)
slc66a1 pqlc2,LOC107734535,LOC107674372,LOC107725314,LOC107664981 coding upstream 1037883 5353619 ~ 5361985 (-)
LOC122350738 NA non-coding downstream 89439 4219579 ~ 4222285 (-)
G60995 NA non-coding downstream 90395 4220397 ~ 4221329 (-)
G60963 LOC107727423,LOC107674368,LOC107743130,LOC107552222 non-coding downstream 248071 4062905 ~ 4063653 (-)
G60937 LOC107701816,LOC107552163,LOC107743107,LOC107584915,LOC107727404 non-coding downstream 286990 4020883 ~ 4024734 (-)
LOC122351087 NA non-coding downstream 312114 3998837 ~ 3999610 (-)
G61067 LOC107601748,LOC107743098,LOC107653422,LOC107584889,LOC107734530,LOC107674365 non-coding upstream 72440 4388176 ~ 4389182 (-)
G61075 NA non-coding upstream 97549 4413285 ~ 4418105 (-)
G61062 NA non-coding upstream 107992 4423728 ~ 4430402 (-)
G61083 NA non-coding upstream 158706 4474442 ~ 4474683 (-)
G61114 NA non-coding upstream 356437 4672173 ~ 4673000 (-)
G61023 NA other downstream 4225 4300992 ~ 4307499 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other downstream 219567 4088724 ~ 4092157 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other downstream 304918 4000331 ~ 4006806 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other downstream 461134 3845453 ~ 3850590 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other downstream 1276632 3032467 ~ 3035092 (-)
G61071 LOC107601747,LOC107653424,LOC107734537,LOC107674377,LOC107578221 other upstream 77477 4393213 ~ 4397074 (-)
LOC122350811 NA other upstream 871518 5187254 ~ 5187921 (-)
LOC122349940 fnbp1,fnbp1a,LOC107720911,LOC107675683,LOC107661630,LOC107757295,LOC107674371 other upstream 880016 5195752 ~ 5207522 (-)
nr1h5 nr1h5,LOC107653410,LOC107598964,LOC107725330,LOC107674374,LOC107734534,LOC107570978 other upstream 1025658 5341394 ~ 5351279 (-)
pip5k1bb pip5k1bb,LOC107664977,LOC105901155,LOC107566804,LOC108412809,LOC108265367,LOC108234418 other upstream 1160477 5476213 ~ 5510943 (-)

Expression


Co-expression Network