sept5a (sept5,sept5a,LOC107713038,LOC107671025,LOC107553041,LOC107699650,LOC107714585)


Basic Information

Item Value
gene id sept5a
gene name sept5,sept5a,LOC107713038,LOC107671025,LOC107553041,LOC107699650,LOC107714585
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2869613 ~ 2883339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246751.1
AGCGTGAGACAGACGGAACCCGAGCAGAGCAGAGACGGCCTGAAACATGACCACCAACATCCGATATAAGAGCAGGATGATGAAATCCGAGGACAGTGAGTCTTTCATTCAGTCATGTGGGGATTcctctgcctgcctgtctgaaCACGGCGCGCTGGGATGTGCCGTGGGCAAGAGACAGACCGAAAACAGGGAAAGGGAAACCAGAGAGGGTTTATAAAGGCAGAGAGTGAGAAAGTGAGGGTCACGCAGGTTTAAAGAGGGACGGCACACATTACTGAGACGTCTGGTTCAGGATGGACTCCATGATGCTGCAGGAGAAACTGGTGGAAAAACTTCTGTGTCCTCGAACCAGGACTACCAGACAGAAGGACAAGCAGTACGTTGGCTTCGCTACGCTTCCTAATCAGGTCCACAGGAAGTCGGTGAAGAAGGGCTTCGACTTCACTCTGATGGTGGCAGGTGAATCTGGATTGGGAAAGTCTACTTTAGTTAACAGCCTCTTCCTCACAGATCTCTATAAAGacagaaaattattaaatgctgaaGAGCGCATTAATCAGACGGTCGAGATCACCAAACATACAGTCGACATCGAGGAGAAAGGGGTCAAGCTCAAACTCACCATTGTGGACACGCCGGGCTTTGGAGACGCAGTCAATAACAATGAATGctgGAAGCCCATCACAGACTACATCGACCAGCAGTTTGAGCAGTACTTCAGAGATGAGAGCGGACTGAACAGAAAGAACATACTAGACAACAGGGTGCACTGCTGCCTGTACTTCATCCCACCGTTTGGACACGGTTTGCGGCCGGTGGACGTGGAGTTCATGAAGGCTCTGCACGAGAAAGTGAACATCATTCCTCTGATCTCTAAGGCGGACTGTCTCACTCCTAATGAGGTCAAAAAGCTCAAGGACAGGGTGAGAGACGAGATCGAGCGCTTCGGGATTAAAGTGTATCAGTTCCCCGAGTGCGACTCCGATGAAGAAGAGGAGTTCAAACAGATGGACAAAGAGCTGAAGGAGTGCACTCCGTTTGCCGTCATTGGCAGTAATACAGTGGTGGAGGCCAGAGGTCAAAGGGTCAGAGGTCGTCTTTACCCCTGGGGTATCGTGGAAGTGGAGAATCAGTCTCACTGCGACTTCGTGAAACTGAGGAACATGCTGATCCGCTCTCACATGCACGACCTGAAGGACGTGACGTGCGACGTGCACTACGAAAACTACAGAGCCCACTGCATCCAGGAGATGACCAGtaaaCTGGCGCAAGATAACCGTACGGACAGTCCGCTCCCCATCCTGCCTCTGCCCACACCAGACGTGGAGACGGAGAGACTCATTAAGATGAAGGATGAAGAGCTGAAGAGAATGCAGGAGATGCTGGAAAAGATGCAACAACAGATGCACGAGAAAGACCAgtgatgctcacacacacacacacacacacacacacacacacacggccctCCCAGCAGCCCTCAGatgtgaatgcatttaaatgatacTGTATTATATCATATCTACAGGTCTGAGCGTCTGCTCGGTGCTTCTGTCCGCCTGCCGctgtcacgtgattcatcataAACCTGTCTAACTTAAATTAACCTCTAAAGGACGTTTCATTTGCTTAGTAAGacgaacgtgtgtgtgtgagttgttCTCAGAAACAGTGTAGgggttcagtgtgtgtgtgttcggagAGACACGCTTTTGCTATGAATTTGTCGGGTTCGAtggtggtttttatttttatagtgaaTGTGAACATGAATATGGCTCTGATAACTGTTACCGAGAAACATCCTCGATTCGGACGGCCGCTTTTTGCTCGttttataacaacaataatcaGAATCAAATCTATTCCATTATTATGAGTGTTAATGgcctttaataatttaataatttatattattatgtcaATTGTTTATGTAAATCTTGAAGTAAAGCTTGctaataaatgtgaataattta
>XM_043246752.1
AGGGCGTGGTTTGGTCTGCGGCGGCCCCGCCCCTCTACGCCTGGGCTTCCCAGCGGGGCTGAGCGTGAGACAGACGGAACCCGAGCAGAGCAGAGACGGCCTGAAACATGACCACCAACATCCGATATAAGAGCAGGATGATGAAATCCGAGGACAGTGAGGACAAGCAGTACGTTGGCTTCGCTACGCTTCCTAATCAGGTCCACAGGAAGTCGGTGAAGAAGGGCTTCGACTTCACTCTGATGGTGGCAGGTGAATCTGGATTGGGAAAGTCTACTTTAGTTAACAGCCTCTTCCTCACAGATCTCTATAAAGacagaaaattattaaatgctgaaGAGCGCATTAATCAGACGGTCGAGATCACCAAACATACAGTCGACATCGAGGAGAAAGGGGTCAAGCTCAAACTCACCATTGTGGACACGCCGGGCTTTGGAGACGCAGTCAATAACAATGAATGctgGAAGCCCATCACAGACTACATCGACCAGCAGTTTGAGCAGTACTTCAGAGATGAGAGCGGACTGAACAGAAAGAACATACTAGACAACAGGGTGCACTGCTGCCTGTACTTCATCCCACCGTTTGGACACGGTTTGCGGCCGGTGGACGTGGAGTTCATGAAGGCTCTGCACGAGAAAGTGAACATCATTCCTCTGATCTCTAAGGCGGACTGTCTCACTCCTAATGAGGTCAAAAAGCTCAAGGACAGGGTGAGAGACGAGATCGAGCGCTTCGGGATTAAAGTGTATCAGTTCCCCGAGTGCGACTCCGATGAAGAAGAGGAGTTCAAACAGATGGACAAAGAGCTGAAGGAGTGCACTCCGTTTGCCGTCATTGGCAGTAATACAGTGGTGGAGGCCAGAGGTCAAAGGGTCAGAGGTCGTCTTTACCCCTGGGGTATCGTGGAAGTGGAGAATCAGTCTCACTGCGACTTCGTGAAACTGAGGAACATGCTGATCCGCTCTCACATGCACGACCTGAAGGACGTGACGTGCGACGTGCACTACGAAAACTACAGAGCCCACTGCATCCAGGAGATGACCAGtaaaCTGGCGCAAGATAACCGTACGGACAGTCCGCTCCCCATCCTGCCTCTGCCCACACCAGACGTGGAGACGGAGAGACTCATTAAGATGAAGGATGAAGAGCTGAAGAGAATGCAGGAGATGCTGGAAAAGATGCAACAACAGATGCACGAGAAAGACCAgtgatgctcacacacacacacacacacacacacacacacacacggccctCCCAGCAGCCCTCAGatgtgaatgcatttaaatgatacTGTATTATATCATATCTACAGGTCTGAGCGTCTGCTCGGTGCTTCTGTCCGCCTGCCGctgtcacgtgattcatcataAACCTGTCTAACTTAAATTAACCTCTAAAGGACGTTTCATTTGCTTAGTAAGacgaacgtgtgtgtgtgagttgttCTCAGAAACAGTGTAGgggttcagtgtgtgtgtgttcggagAGACACGCTTTTGCTATGAATTTGTCGGGTTCGAtggtggtttttatttttatagtgaaTGTGAACATGAATATGGCTCTGATAACTGTTACCGAGAAACATCCTCGATTCGGACGGCCGCTTTTTGCTCGttttataacaacaataatcaGAATCAAATCTATTCCATTATTATGAGTGTTAATGgcctttaataatttaataatttatattattatgtcaATTGTTTATGTAAATCTTGAAGTAAAGCTTGctaataaatgtgaataattta

Function

symbol description
sept5a Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cytoskeleton-dependent cytokinesis; and regulation of exocytosis. Predicted to be located in cytoplasm. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and synaptic vesicle. Is expressed in brain; retina; and spinal cord. Orthologous to human SEPTIN5 (septin 5).
sept5 septin 5

NR:

description
unnamed protein product

GO:

id name namespace
GO:0017157 regulation of exocytosis biological_process
GO:0007049 cell cycle biological_process
GO:0005886 plasma membrane cellular_component
GO:0031105 septin complex cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16943 SEPT4; septin 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246751.1 True 1979 mRNA 0.47 13 2869613 2883278
XM_043246752.1 False 1769 mRNA 0.48 12 2869613 2883339

Neighbor

gene id symbol gene type direction distance location
gp1bb LOC107713039,LOC107671026 coding downstream 857 2865388 ~ 2868756 (-)
dhx37 dhx37 coding downstream 4685 2847938 ~ 2864928 (-)
si:ch211-166a6.5 LOC107552189,LOC107713040,LOC107553042,LOC107699620,LOC107670979,LOC107714553,LOC107671022 coding downstream 24897 2826476 ~ 2844716 (-)
cux2b cux2,cux2b,LOC107671009,LOC107553024,LOC107715151 coding downstream 53574 2650970 ~ 2816039 (-)
mtmr3 mtmr3,LOC107754413,LOC107671008,LOC107699659 coding downstream 223684 2612845 ~ 2645929 (-)
zgc:63587 zgc:63587,LOC100700755,LOC101064433,LOC103397778 coding upstream 1005 2884344 ~ 2911861 (-)
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 38374 2921713 ~ 2929935 (-)
ciao1 ciao1,LOC107714582,LOC107671031,LOC107713036 coding upstream 50706 2934045 ~ 2938344 (-)
igsf9b igsf9b,LOC107552192,LOC107671028,LOC107713033,LOC107699646,LOC107714578,LOC107553037 coding upstream 69394 2952733 ~ 2993383 (-)
tmem230b tmem230b,ct030,tmem230,LOC107713020,LOC107553029,LOC107670990,LOC103023473,LOC101077900,LOC106579885 coding upstream 110596 2993935 ~ 2998395 (-)
G60604 LOC107715152,LOC107553025,LOC107670977 non-coding downstream 257384 2601709 ~ 2612229 (-)
G60566 gcn1,LOC107552181,LOC107754417,LOC107553027,LOC107699625 non-coding downstream 295609 2506238 ~ 2574004 (-)
G60548 NA non-coding downstream 454112 2410413 ~ 2415501 (-)
G60542 NA non-coding downstream 530769 2338559 ~ 2338844 (-)
G60532 NA non-coding downstream 586722 2282538 ~ 2282891 (-)
G60638 tmem127,LOC107552193,LOC107713035,LOC107699648,LOC107671030,LOC107553020,LOC107714579 non-coding upstream 55941 2939280 ~ 2940478 (-)
G60640 LOC107699617,LOC107714575,LOC107553039,LOC107670999,LOC107552195 non-coding upstream 60378 2943717 ~ 2944007 (-)
G60639 NA non-coding upstream 62071 2945410 ~ 2945931 (-)
G60719 NA non-coding upstream 677670 3561009 ~ 3561418 (-)
G60720 NA non-coding upstream 679253 3562592 ~ 3563073 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other downstream 45787 2782620 ~ 2823826 (-)
bicdl1 bicdl1,LOC107553048 other downstream 317426 2521214 ~ 2552187 (-)
G60564 pxnb other downstream 405242 2460931 ~ 2464371 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other downstream 707610 2131369 ~ 2162003 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other downstream 808132 2059394 ~ 2061481 (-)
G60679 adra1aa,LOC107553034,LOC107699645,LOC107713032,LOC107671010,LOC107552152 other upstream 149128 3032467 ~ 3035092 (-)
lhfpl4b lhfpl4b,LOC107584928,LOC107674308,LOC107727430,LOC107743140,LOC107701811,LOC107552174,LOC103032126,LOC108440531 other upstream 962114 3845453 ~ 3850590 (-)
zgc:113363 LOC107743117,LOC107701819,LOC107727412,LOC107584929 other upstream 1116992 4000331 ~ 4006806 (-)
G60967 LOC107674359,LOC107701814,LOC107727428,LOC107743108,LOC107552221 other upstream 1205385 4088724 ~ 4092157 (-)
G61023 NA other upstream 1417653 4300992 ~ 4307499 (-)

Expression


Co-expression Network