rorca (LOC107657922,LOC107750669,LOC107548667,LOC107585851)


Basic Information

Item Value
gene id rorca
gene name LOC107657922,LOC107750669,LOC107548667,LOC107585851
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 9353668 ~ 9366787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246757.1
AGTCCACGCGCCGAAAGTAGGTTAGACTACAGAGAAGCACAgacgcagagagagagggaaagagaagagGGCATCATTTTATTCCATAGCTGACAGTGCGCGCATTTAcgcagggaaaaaaaactatgatgGAGCGGAATTTATTCTGAACAACCGTATGAGAAGAGCAAGTTGACTGGTATAACTTACCAGGTTTAATAGTTATTTTCTTGCAAGCGCTCTGTTTTGGAGTTTTCTGAATTTTTCCCGAGTTTAACTTTCGGCGCTGATCAAATGTACTGGAGTTATATTATCGTTCGCAGATAATATAGCATCAAAATGAGAGCACAAATCGAAGTAATCCCATGCAAGATTTGCGGGGACAAATCATCAGGCATCCACTATGGGGTGATCACTTGTGAAGGCTGCAAGGGCTTCTTCCGCCGAAGTCAGCAAAACAATGCGATATACTCCTGCTCCAGGCAGAGGAACTGCCTTATTGACCGAACAAATCGCAACCGCTGCCAGCACTGCCGCCTGCAGAAGTGTCTGGCATTGGGCATGAGCCGCGATGCGGTGAAGTTTGGACGTATGTCAAAAAAGCAGCGCGACAGCCTCTATGCCGAGGTTCAGAAGCACCAGCAGTCTCAGGAGCGGGCAGGGGCTTTAGGCAATGGTGTACCCGGTCATGCTGGTGATGAGGTCGGGGAGAACGGCAGCAACCATGGCCGAGCCTACAGTCGGGGCTCCAGCACCACACTTAGTGACCTGGATGATATAACCACGCTACCAGATGGTCTTCTTTTTGATCTGCCGCTCACTCCGGAGGAAGCTGCTGACTACTGCAGCCTGGAGTTGCTGGGAGGAAGCGGTGGGAGCAGTTCGTCCTCGCAGAGTTCTCCTGAGACAAACAGACAGGAGTTTAGTGACACAACACACATCAAACACGAGTATCAGACCCTGCACGAGACGGGAATTTACACTCGCTCATTTCTTAACCCACCTGAAGGCTGTTCCTTGATGGAAATTGaacggATTACACAGAATGTGGTAAAATCCCACATTGAGACAAGTCAGTACAGCACAGAAGAACTGAAAAGATTTGCTTGGACACTCTACACACCTGAGGAGATACGTGTCTACCAAAACAagTCCACAGAGATTATGTGGCAGCAGTGTGCTGTGTACATCACGAATGCCATCCAGTATGTGGTGGAGTTTGCCAAGCGCATCACTGGATTCATGGATTTGTGTCAAAATGACCAGATTATTCTTCTCAAAGCAGGCTGCCTGGACGTGCTGTTGATCCGAATGTGTCGGGCCTACAACCCCATCAACAACACACTATTGTTTGATGGAAAGTTTGCAAGCCCTCAGCTCTTTAAAGCTCTCGgTTGTGATGATTTGGTGGGTGCTGTGTTTGAGATGGCTAAAACCGTGAGTCGACTACAGCTGTCTGAAGAAGAGATGGCTCTCTTTACTGCCACTGTGCTTCTGTCTCCAGACCGTCCTTGGTTAACAGATGCTCAGAAAGTGCAGAAACTTCAGGAGAAGGTCTATGTTGCGTTGCAACACTGTCTTCATAAAAGTGGTGCTCCTGAGGAAAAACTGGCAAAGATGGTGTCCAAGTTGCCTATGATGAAGTCCATTTGCAACCTCCATATTGATAAGCTGGAGTTTTTCCGTCTGCTTCACCCAGAAACGGCCTACAACTTCCCTGCTCTTTACAGAGAGGTTTTCTGCAGCGAGATCTCCTTCCCAGACTCCACTGAGGGCTAACAGTCATTGAAGTGTCATATTGGCTCTgatgagagacagaaagaggaagagagttAAAGAAAGACAGGGAATGGAAATAGGAGGAGGTAGATGGATATGTGTTTGAGGAAAACCAGCAACACACTGACAATCTTGCACGTTACACTTTACGACTCCATCTATAACCTCCCTCCTGATGGAGTGATTCACTCCTCTATTTGAACAGGACCCAGATTTCTTACAAGACGCTGTTAAATGTCAGCAGTCATTTAAGGTGCTGGTTACTATTACTCATGCTACCTACATATAATGACTCAAACAGAGTAAAtgatgtatatttaattaaaaagagtaCTCGATTAAACTTGGAGCTCAGATCTCCCTAAAAATTAAGTGCTTGAAAAGTGGATCCTTCTCATTTTGCGGGTACTCTTAGGAAGAGAACTATGAATGTAACCCACCTGACGTGGCAAAGCCTCAGGATTAAGACAGAATGTATTATGTATTCCTGCCCCATATGTAAAGCAAGCTCTTAAGGATGGTTTCTTTAGACAAACAGTTTTGAATCCATGCGAAACTGTTCAAAGGGACCAGTGCATACACACCTGAGGTTGTAAATGCCACATGAGCACCTTCACTTTGACAGACTCAACACTAACGCATAGCACACTGCACAGACCACATGTGTACATGGTGTGTTGTCTTCTGAGctctttatttttgcatataaatttaAAAGATGCAACTAAACTAATGAAAACCTCATCCTTATTACCCTTTCCCACACAAATGCCACTTGGATAAAGATATTAGACAATATTTTGTTATCCATATTTGATCGGAAACCACATGTATGTAGATTGATAGATGTAATTgagaatatatttataaacggAGCCTGTAGATAGCACATGTAGGcagagatataaagttgcaccTTAGAGTGGATGTTCTCAAGCCCTTTCAAAGACTTCTCAACTATAGGAGTGGAATTCTGGGCTGGAGATGGAATTGGTGTGACCAGCTTTCGATTTAGAGGCAGGTGGATGGCACTTAAATACTCCACAAAGAAAGGACTTCACAGGAGCAGGACTTTGCTGTCGCCTCACATTAGATGGCAAAAAGACAATGCCTCTATGAGACTTTCTGAAGTGTAGCAAACCACTCATACGGCTGCTGGGAGCAAGGCCTCAGGAGAACACAAAGAACAGTGGATGGAAGGAAacgtatattttttttttttagagacaACAAACAACCTGAGCTCATCGTCAGTCATGAGGAGGCCACAGAAATGttgtaattctgacttttctgtTTCTACAGCTGTGAGGATAAGCGGATTCACAGGCCGTACCGTGCTTTGCATTGTGTCTGATGTGGGGATCAGTGTTGTGTTGCTGTGTGATTTGTTTTTCCCCTTCATCCATGTACCTTTGGTGTTCACTTATAGCACAACTATAGGTTGACAGAACCATCAGCTACCCCCCTGAGTTCAGGAATACTATGGTTTAGTTTATGTTCTGAAACTTTGCGGTTCAAACCTGAAAGAGAAAAATCTATCTACTCTCTGTCTGCAGTGTGAAAGCAGCCTTCGTTTTTCAGAGGCAGGAAGTCCAGATTGGTCTCAGGGGAGTTTGAGGAGTGGCCCAGAAACCAGAATACAAACTAAAAGCCCAAAGGAGGGCTTTTCAAACCCCGTTAGTGCCCAGCTTTGTAAGATTAAAGGGTATGAAAGATGTTTTGAACGATTGATAAGTATCAACGTCCAGTTTCCTGACAATTAATTTTAACAAGCTcgcctgatgtttttttttttgcactgctgGAACAGTGCCTAACTATATTTTCTTGTAAGATTTTATATGGTtggtatattacattttcacgTTGTTTAACGCAGTTATCACAGTGTCTGCCTGTGCAATAGTCAGTCTTTCCATTTTTAGTATCGGCAGCCCTCACAAGCCAAGAATCTCCTTGGATTTCATAAGCACTCCAGCTCAGATCGTTTAACGCCCCCTTGCTAAGTTCTATCAAtcctttttaagttttatttttttacgctTGTCTGTTAGCTAACTTAAAATGACGGAAAGTCAAAATGTGGAGAAAGATTGTAACAAAGTGCAaatactttgtaaaaaaaaaaaaaaaacatttttagagttTTAGATGATGTATTTTTGTGGAGTGTAATTCGCCACTCTACAAACTACCACAAGTGTCTGGCCCATCCTTGAGGGTAGTTCTGGAAGTGTGCGTTTACATCTACACTCATTCACTCAGGGAGATAGCTGGGTTCTCTGTCCTAAAATGTCTTCTTCAGTTAGCCTAGCAAGACACCTTGCACCAAATAGAAGACCTTAAAACCTTGATCACTGTGTACGGTAACTTTTCTTGTGAATGTTAATCGCAGAAGTATCAAAGAATTTTACCCCTGTCTTATATCAGTGCTATTGGAGGACTTTTTCAGTTtgactttcttaaaaaaaaaaagaaaaaagaaaaaaaaaagaataggatCAAAActaaggtatatatatatatatatatggtagaTATACAAGGAtgaatttaatctttaaatctagtgttgtgtttttttatgtttatttttgtgatattttctttcttaatttctGTCCTTTTCTGTAACATCACCCGTGTAGTGTCGTCCTTTGTCTTGAAGAATTAAAAtcctatttttttaaagagcattttTAAGCAGAAAATCCCCTACAAGAGTCCTAATTCTTTGCCATGGTCCTCCTGTGGttgtttcagtttaaaataaatcatattatagATTTTAACGAATATAATTTATGGTGTTATGGATAcagagaataaaacaaacacattaaaatatattattgtacaaTAAGGATTACACACATGGATTCCAGAATGTAATAAAGGTCTTTTTACTTTA

Function

NR:

description
RAR-related orphan receptor gamma 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246757.1 True 4672 mRNA 0.42 10 9353668 9366787

Neighbor

gene id symbol gene type direction distance location
sh3gl1b sh3gl1b,LOC107750655,LOC107700047,LOC107717567,LOC107548638,LOC107585850,LOC107657927 coding downstream 1114 9335682 ~ 9352554 (-)
stap2b NA coding downstream 24480 9321262 ~ 9329188 (-)
cpox cpox,LOC107657924,LOC107717573,LOC107585846,LOC107550392 coding downstream 48327 9300474 ~ 9305341 (-)
tmem47 LOC107585845,LOC107717575,LOC107750585,LOC107548625,LOC107657933,LOC107699999 coding downstream 61532 9284843 ~ 9292136 (-)
nexn nexn,LOC107717577,LOC107657915,LOC107750547,LOC107548557 coding downstream 81092 9263622 ~ 9272576 (-)
sema6bb LOC107585853,LOC107717564,LOC107750685,LOC107657917,LOC107549930,LOC108413003,LOC107700081 coding upstream 11704 9378491 ~ 9490669 (-)
abhd17ab abhd17ab,LOC107700092,LOC107717562,LOC107548688,LOC107657939,LOC107750691,LOC107585854,LOC105895145 coding upstream 137225 9504012 ~ 9511635 (-)
zgc:77486 zgc:77486,LOC107585855,LOC107717563,LOC107657940 coding upstream 147164 9513951 ~ 9520753 (-)
plin3 si:rp71-61h23.4,LOC107657942,LOC107717561,LOC107750720,LOC107700160,LOC107549942 coding upstream 154934 9521721 ~ 9526061 (-)
rgl1 rgl1,LOC107750730,LOC107717560,LOC107657943,LOC107700121 coding upstream 162179 9528966 ~ 9552304 (-)
G62293 glis1,LOC102303521 non-coding downstream 268474 9082795 ~ 9085194 (-)
G62250 dio1,LOC107700640 non-coding downstream 314968 9030865 ~ 9038700 (-)
G62263 lrriq3,LOC107657910,LOC107585823,LOC107699824,LOC107548466 non-coding downstream 346563 9006834 ~ 9007105 (-)
G62262 NA non-coding downstream 346889 9006555 ~ 9006779 (-)
G62255 NA non-coding downstream 380895 8968289 ~ 8972773 (-)
G62519 NA non-coding upstream 41627 9408414 ~ 9414439 (-)
G62525 NA non-coding upstream 159840 9526627 ~ 9526966 (-)
G62564 NA non-coding upstream 336172 9702959 ~ 9703191 (-)
G62565 NA non-coding upstream 336589 9703376 ~ 9703598 (-)
G62567 NA non-coding upstream 342186 9708973 ~ 9709221 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 90842 9257243 ~ 9262826 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 696382 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 703685 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 937115 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 1120894 8117008 ~ 8232774 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 333607 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 587894 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 628760 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 878409 10245196 ~ 10248156 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 1022396 10389183 ~ 10392043 (-)

Expression


Co-expression Network