sema6a (LOC107661172,LOC107663594)


Basic Information

Item Value
gene id sema6a
gene name LOC107661172,LOC107663594
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1069841 ~ 1129502 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246766.1
tgtgtgtgtgtgtgtgacagctgCTGTGTGTGAGCTCAGCTCAGTAAAGCTTCATCTCTAATAGGATGAGCAGCCGCTCGCTCGTCTAGCTGTATGCGCCGCTCATTGTTCGCTTCGCCGTTTCTCCGGGTTCGGTTTCCGCGGATCGGTCGGTCGGTGATCGGGATTTCTCATGGATCTATCGATGTGAAGAAGCTGTCACACGCGgcTGAAGTTCAGAAGTGATCGAGCGGAGCGGAGGACTCAAACATGCGGTCTCAGGCCTTGTTGCTGTATTTCACCGTGCTGCAGACGGCCAGAGCCGCTTTCCCAGAAGACACCGAGCCAATCAGTATTTCACACGGCAACTATACCAAACAATACCCAGCGTTCGTGGGCCACAAGCCGGGCAGGAACAACACGCAGCGGCACAAGCTGGACATTCAGCTGATCGTCATCATGAACCGCACGCTCTACGTGGCCGCGAGGGATCACATCTACACGGTGGACATCGAGACGGCCAACACAGAGGAGATCTTCTTCAGTAAGAAGCTGACCTGGAAGTCCAGACAGGCCGATGTGGACACCTGCAGGATGAAGGGAAAACACAAGGACGAGTGCCATAACTTCATCAAGGTCCTGCTGCAGCAGAGCGACGACTCTCTGTTCGTCTGCGGGACCAACGCCTTTAACCCGTCCTGTCGCACCTACAAGATGGACAGTCTGGACGCCGTGGGCGATGAGATCAGCGGAATGGCGCGCTGCCCGTATGACGCCAAACACGCCAACGTCGCCCTGTTCGCCGACGGGAAGTTGTACTCGGCCACGGTCACAGACTTCCTGGCCATCGATGCGGTCATCTACCGCAGTCTGGGCGACAGTCTGACCCTCCGGACGGTCAAACACGACTCCAAATGGCTGAAAGAGCCGTATTTCGTCCAGGCCGTCGATTACGGCGAGTTCATCTACTTCTTCTTTCGGGAAATCGCCATGGAGTACAACAGCATGGGGAAGGTGGTGTTTCCTCGAGTGGCTCGTGTGTGTAAGAACGACCTCGGCGGCTCTCAGCGAGTTCTGGAGAAACAGTGGACGTCTTTCCTGAAGACACGACTCAACTGCTCCATCCCTGGAGACTCACACTTCTACTTCAACATCCTGCAGGCCGTGACCAGCGTCATCCACATCAGCGGCCGAGACGTGGTCATGGCCACCTTCTCCACGCCCTACAACAGTATCCCGGGATCGGCCGTCTGCGCGTACGACATGACAGAGATCGCCGCGGCCTTCACCGGACGCTTCAAAGAGCAGAAGTCGCCCGATTCCACCTGGACGCCCATCCCGGAGGAGAGGGTGCCCAGACCCAGGCCGGGCGTCTGCGCAGGATCTTCATCTGGAGAGAAGTTCAAAGTGTCCAACGACTTTCCGGATGACACGCTGAACTTCATCAAGCTTCACCCGCTGATGGACGAGGCCGTTCCTTCCATCGCCAATCGCCCGTGGTTCCTCAAGACAATGGTTCGATACCGCCTGACACGTATAGCCGTGGATAACGCTGCCGGCCCTCATCGCAACCACACCGTGGTTTTCCTGGGATCGGAGCGAGGAATCGTGCTGAAGTTCCTGGCCAAGATGCGGAGCGGCTTCCTGAACGACAGCCTGTTTCTGGAGGAGCTGAACGTCTACAACCCAGAGAAGTGCAGCATTGACGGCGTGGAGGACAAGCGCATCATCAGCATGCAGATCGACAGCAGGAGTCACTCTCTGTTCGTGGCCTTCACCTCATGCGTGGTCAAAGTCCCGCTGTCTCGCTGCGAACGTCATGGGAAGTGCAAAAAGTCCTGTATTGCCTCCAGGGACCCGTACTGTGGCTGGGTGTCAGAGGGCGCCTGTAAAGAAATCTCATTGGACCCAAAatGGCCGTTCGAGCAGGACGTGGAACAGGGCAACACAGATGGACTGGGCGACTGCCAAAACTCGTTCGTGGCTCTCAATGAGCATCAGCGCAGGCAGCAGGGTGCGAGCGATATTACCCAGAATGCTGCACGCGGCCTCCTCACCACCGTCCCTCCTCCGGCCCCTGGGGGCCCACTGCTCCGGGGCCGCATGGTCAAGCCGAAGGAGGCCGTGCCGTCGGGCGATCAGAGCGACCCGTATGTGGCCGTTCCCTCAGAGACACAGCAGGAGAGCGCCGGTGTGATCCGCGAGACGTACCATCGAGACCGCGATCAGATGGTTCCCATCACGCTCCTGGCCATCGCCGTCAGCCTCGCCGTCATGGGCGCCATCTTCTCCGGCATCATCGTGTACTGCGTGTGTGACCACCACCGGCGGCGCGACTTCGAGCTGCCCGGCCGCAAAGACAAGGACTCGGTCCAGTCCCGGAGGGGCTCCATGAACAGCGTCACCAAGCTAACGGGGCTCTTCGAGACGCAAGCCAAGGACGGCCGGCCCGAGGCCATTCTCACCCCGCTCATGCACAACGGCCGCTTGACCAACGGAAAGATGCTCATCAAAGCCGACCAGCACTTGGATCTGACCGCTCTGCCCACGCCCGAATCCACGCCCATGCAGCCGCGCCGCAAGCCCAGCCGAGGCAGCCGCGAGTGGGAGCGCAACCAGAACCTGATCAACGCCTGCACCAAAGACCTTCCCTCCATGGGCTCCCCGGTCATCCCCACTGACCTGCCCCTGCGGGCGTCTCCAGGCCACATCCCAAGCGTGGTGGTGCTGCCTTTGCCCCAACACCAGCACGAGTACGTGGAGCAACCTCACCGCGGAGAGCTCTCCGATGACCAGGCCTCCACGCTGGAATACAAGTCCCTCAAGAGCccggagagcgagagagggccTCCGAGGGTCCCCCAGCGAGAGGCGTCTCTGGGCCCCATGGTTCCTCAGATGGGCAAGAGGCTGGACGTGCATTCGTCCGTCTACGGCCGGGGCTATCCCATGAGCTCAGGCCTCAAGAAGCAGCACAACACCAACTCGTCCAACTCATCCCACATGTCCAGGAACCACAGTTTCCGGGCAGAGACGCCTCCTCCGCCCGCTCCGCAGCGAGTGGACTCCATGCACGTCACCTCTCCGCCGCCCATCCTCGGCCTGTCGCGCCATCCCAGCCTGAGCTCGTACGGCTCGCTCTCCAGGCATCTCAAGCCGGACGTTCCTCCGAAGCCCAGTCTGGCGTCCCTTTCCACGAAAGCCAAGTCCGGAGACTCCTGCACATAATCGGGAGCTTGAAAGTGCGTCTGCTTTGTACAGCTGTGTGTGCAGGAAACGCAACTCACTTTgtctgttttgtatattttgtaaaacatgtCGAGCTCAGGCTGATGCGTCTCCAGGAACAAGGAGGAACTGGCTGCATTGTTGCCAAAAGCACAGCGGAGAAGCTTCGAGAGACGCCAAGCACTTGGACGCAGCAGAAGCTGGAGTAAACTGTGAAGAGCCGCCGCTCCGGACGAAGCAATCGAGTTCTGCCTTCGCGCAAGAGTCTACTGTAAACGTCGACTGAATAACACGTGACTGTTAATACTAATAGcgggttgtatttattttttaataaagtgcttttgcagAGAGAGCGTCTCGAGCGAGACGGCAAGGAtggttttaatttgaattaatctATTTAAAGTCATTAAACTGGAGCCAGTACTTCTGTCCACTAACTCTAGCTAAGCAAAGTCGGAGATGACTCCGTGAGGAAGGAGTATTTCTCGAGCCGTGCCAGAGGGGCTTGTGGGTAGACAGGAACTCCTCGATCTCACCAGTCCATTCTCCAGATGCTTTCAGACGGACGTTTTCTTCTCGTTCATGTCCAAACAAGCCTGTTTTTCTCCTTCCACCTGTAAATTTGTGCCTTACACCCCTGAGTAGTGAAGCGTTTGTTAGCTGTTATCTGTCGTAGTTCTTATGATGGCGTTCGTTTCCCTcgtttgattattaaaaaagaaacaaaacaaaacaaaaaaaacgcgTAATTGAAGAATGTAGGTGTTGTCGTCGTCGTCGACTCCTTTTGCTAACCACAAATCGTGCTTGATTTCTGATTGTGCCAATGAATCGGCCCTCTCGTCGTGCTGGAagaatgtttgcttttgttttcctttgtcctttttttacttttcacaaAGTCAAGATGATGTTTTACACTGTTTGTAGATGACTTGTTGTGTATCTGTGGATATCGGGCTGCTTCGAGGCaataagagaaaaacacacaagcgAATTGGATATGACGTTTCtcccaaacacaaacacacatgcaagcTTTCTAATGTATATGATCAAACACAGTTTTTAGGCAGTGAATACAGGCTGGCTCCTGTGTAGATATGCACTCCAATAATATTAGGAAACAGATTAATGTTTTCAATGTTTGTGACAGATTCCGATTAATATAATTTTCTAGCTCTATGGTTGTGACGTAATACGAGGGATTGTTATTTAACTATTTTGACACACGTTTTATTGAACTTGACGTCCAGAAATCTCAAGTTTTGGCTTTGTAGATGTCACCCAACGCCCGGGCCGTAGCGAACGGAGCCCGAGGTTCCCGAGCTCTGGTGCCTTTCTAGACGCCACTAGACTTTGGAAGTGGAGTTTGTACTCTTGTATGATATGGTTTTGTCACCGGCCCTCTCCCACGTCTGATTCACAGCTAAATGTATGTTGTAAAGAAATTCTctttaataaatggaaaaagtaataaaaaagtttCAGACTCTCGTCA

Function

NR:

description
PREDICTED: semaphorin-6A isoform X1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246766.1 True 4714 mRNA 0.55 21 1069841 1129502

Neighbor

gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding upstream 53276 1005559 ~ 1016565 (+)
LOC122351116 ppic,LOC107704600,LOC107713556,LOC107726227,LOC107566397,LOC100333141,LOC107703627 coding upstream 146633 918543 ~ 923208 (+)
LOC122351049 cep120,zgc:163014,LOC107726217,LOC107712640,LOC107694735 coding upstream 192894 853071 ~ 876947 (+)
LOC122350421 slc12a2,LOC107697601,LOC107712558,LOC108442001,LOC108265961,LOC107573338,LOC105890695,LOC107726215 coding upstream 227909 822359 ~ 841932 (+)
LOC122350422 NA coding upstream 249156 810039 ~ 820685 (+)
cdo1 cdo1,LOC107729053,LOC107573765,LOC103396961 coding downstream 41147 1170649 ~ 1178671 (+)
tmed7 LOC107729055,LOC107728255,LOC107661170,LOC108265697,LOC107663596,LOC107572957,LOC107573769 coding downstream 56267 1185769 ~ 1187485 (+)
LOC122350615 fem1c,LOC107728259,LOC107572967,LOC106580179 coding downstream 58846 1188348 ~ 1199937 (+)
LOC122350068 ccdc112,LOC107573794,LOC107578772 coding downstream 74739 1204241 ~ 1209643 (+)
trim36 trim36 coding downstream 90222 1219724 ~ 1235577 (+)
G59845 LOC107698412,LOC107571775,LOC107726226,LOC100537613 non-coding upstream 46927 1021192 ~ 1022914 (+)
G59814 NA non-coding upstream 93135 973486 ~ 976706 (+)
G59824 NA non-coding upstream 109670 958679 ~ 960171 (+)
G59825 NA non-coding upstream 111610 957223 ~ 958231 (+)
G59811 NA non-coding upstream 118868 947677 ~ 950973 (+)
G59876 NA non-coding downstream 27420 1156922 ~ 1161160 (+)
G59877 NA non-coding downstream 32918 1162420 ~ 1164776 (+)
G59898 NA non-coding downstream 138682 1268184 ~ 1268392 (+)
G59899 NA non-coding downstream 138936 1268438 ~ 1268674 (+)
G59914 NA non-coding downstream 262641 1392143 ~ 1393428 (+)
znf608 znf608,LOC107574328,LOC107697597,LOC107712568,LOC107704598,LOC107573349,LOC107726216 other upstream 217837 842077 ~ 852004 (+)
G59807 NA other upstream 265002 803653 ~ 804839 (+)
cdc14b cdc14b,LOC107661524,LOC107704583,LOC107568104,LOC107726879,LOC107570987 other upstream 519154 537775 ~ 550687 (+)
pggt1b pggt1b other downstream 81313 1210815 ~ 1218804 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other downstream 785958 1915460 ~ 1918371 (+)
polb polb,LOC107670984,LOC107722860 other downstream 885357 2014859 ~ 2020034 (+)
LOC122350053 NA other downstream 901322 2030824 ~ 2035980 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other downstream 908197 2037699 ~ 2039836 (+)

Expression


Co-expression Network