Gene
RNA
| Item | Value |
|---|---|
| gene id | G31172 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 10629944 ~ 10631721 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU35279 | True | 354 | lncRNA | 0.47 | 4 | 10629944 | 10631721 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_10619819_10627261 | CNPY1 | coding | downstream | 2683 | 10619019 ~ 10627261 (-) |
| CI01000004_10553379_10573352 | PAXIP1 | coding | downstream | 54701 | 10553037 ~ 10575243 (-) |
| CI01000004_10458668_10465442 | NA | coding | downstream | 164241 | 10458662 ~ 10465703 (-) |
| CI01000004_10436514_10438365 | NA | coding | downstream | 190485 | 10436499 ~ 10439459 (-) |
| CI01000004_10290550_10295288 | CAHZ | coding | downstream | 334587 | 10289863 ~ 10295357 (-) |
| CI01000004_10692864_10704094 | TRPA1A | coding | upstream | 60916 | 10692637 ~ 10704094 (-) |
| CI01000004_10757852_10760211 | NA | coding | upstream | 125822 | 10757543 ~ 10761142 (-) |
| CI01000004_10766385_10766860 | TCEB1B, TCEB1, GM14517, TCEB1A | coding | upstream | 134619 | 10766340 ~ 10766860 (-) |
| CI01000004_10788659_10809214 | JPH1B, JPH1 | coding | upstream | 156938 | 10788659 ~ 10809805 (-) |
| CI01000004_10847650_10847940 | NA | coding | upstream | 215836 | 10847557 ~ 10847995 (-) |
| G31142 | NA | non-coding | downstream | 16296 | 10611819 ~ 10613648 (-) |
| G31139 | NA | non-coding | downstream | 18870 | 10610283 ~ 10611074 (-) |
| G31135 | NA | non-coding | downstream | 79303 | 10544634 ~ 10550641 (-) |
| G31140 | NA | non-coding | downstream | 87755 | 10541949 ~ 10542189 (-) |
| G31105 | NA | non-coding | downstream | 148822 | 10480817 ~ 10481122 (-) |
| G31173 | NA | non-coding | upstream | 4449 | 10636170 ~ 10636383 (-) |
| G31176 | NA | non-coding | upstream | 13105 | 10644826 ~ 10653508 (-) |
| G31179 | NA | non-coding | upstream | 21969 | 10653690 ~ 10653939 (-) |
| G31184 | NA | non-coding | upstream | 33063 | 10664784 ~ 10665159 (-) |
| G31186 | NA | non-coding | upstream | 35208 | 10666929 ~ 10667135 (-) |
| G30316 | NA | other | downstream | 1223023 | 9377937 ~ 9406921 (-) |
| G29746 | NA | other | downstream | 2271817 | 8354498 ~ 8358127 (-) |
| G29656 | NA | other | downstream | 2664444 | 7964364 ~ 7965500 (-) |
| G29388 | NA | other | downstream | 3998037 | 6631293 ~ 6631907 (-) |
| CI01000004_06539836_06541252 | NA | other | downstream | 4084372 | 6538904 ~ 6541252 (-) |
| G31203 | NA | other | upstream | 114716 | 10746437 ~ 10750641 (-) |
| CI01000004_11407198_11412220 | ADCYAP1B, ADCYAP1 | other | upstream | 775744 | 11406957 ~ 11412907 (-) |
| G32150 | NA | other | upstream | 1144798 | 11776519 ~ 11780951 (-) |
| G32207 | NA | other | upstream | 1744447 | 12376168 ~ 12384780 (-) |
| CI01000004_14543631_14551256 | NA | other | upstream | 3919079 | 14541515 ~ 14551352 (-) |
