sema3b (LOC107717529,LOC107556489,LOC107669651,LOC107591772,LOC107711952)


Basic Information

Item Value
gene id sema3b
gene name LOC107717529,LOC107556489,LOC107669651,LOC107591772,LOC107711952
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12890474 ~ 12919391 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246799.1
agagagagagagagagagggaaagctGGAGAGCTCTGCGGTAGCAGTCAGCGCAAGAACCAAAGCAGAGAAAGACTGGAAAAAAGAAGgtagattgagaaagaaacagtgaaATTAGGAGCTAAgatataaaaagaagaaaaagagagaagtcTTGAAATTCAATTCAGAGCAGGACAGAAGAGgctgagagagaaaggaaataaaagacaGACTCATGAATTAAAAGAAGTCTTGGACTTCACATTGGAGACACATGTCCATGCGTGgactgttgctgctgctgtgaTCTGTCATTCCTCCTCacagcgtgtttgtgtgtgctctAGAGAGACTgaggagggtgtgtgtgtgagcctgtCGTTCCTCTGGAGTCTACGGGACCATGGCACCTGTCAGGAACGGATGAACTTGAGGCTTAAAGGACTCGTGGGGGAAAAAGAACGAGAAAAAAGCTGAAGGAGTGAAAGCTTTCAGCGTAGAGAGGAAAATCTACATCCACGGCATCACTGTAACAACACACAGAACGCCTGAGAGCCGTCACTGCAACAGCTGCCACGAAAACCAGCATCCCATTCAACCATCTGTGTGGCAGCTGTCTGCGGTTTATAGCTGATAAGAAATACCGGTCTTCCTCAGAAGATGATGacgatggtgatgatgatgatgtacaGCTCGCTGGTCCTGCTCGGGCTGATTGGTATCAGTGCTTCATCCAGCGGAGGTTCATCTTCCTCACCCCGGATGAAGCTGTCTTATAAAGATCTCCAGCAGTTTAACGGCATTAAGCGGTTTGACTTGGAGCGTTCGTGTTGTTTCGGAGCTCTCTTATTGGACGAGGAGAGGGGCCGGCTGTTTGTTGGAGCTCGCAACTTTCTGTTATCTCTCAGTCTCGACAACATCAGCAAACAGGAACAGAAGatCTACTGGCCAGCGCCTGTTGATTGGAGAGAAGAGTGCAACTGGGCCGGGAAAGACATCAATacGGACTGCGTTAACTATGTGAAAGTGCTACACCACTACAATCGGACTCACCTGTATGCCTGTGGGACAGGGGCTTTCCACCCCACCTGTGCTTATGTGGAAGTGGGACAGAAGATAGAGgaTCATGTGTTTAGAATCGACCCCTCCATGGTAGAAGATGGGAAAGGAAGGAGTCCATACGACCCACGCCACACATCAGCGTCTGTTCTCATTGGTGATGAGCTTTATGCAGGCGTAGCCACTGATTTGATGGGACGGGACTTTACAATCTTTCGCAGCATGGGACAAAGGCCCTCCATAAGAACAGAACAGCATGATTCTCGCTGGCTTAATGAGCCCAAGTTTATTGCGGCGTTTGGAGTTCCAGAGAGTGAGAATCCTGACGATGATAaagtcttcttcttcttcagagaAACTGCTGTAGAAGCTCAGGGATTTGGGAAGGTTACATATTCCCGGATTGGTCAGCTCTGCAGGAATGACATGGGAGGACAGCGCAGTCTAGTAAATAAGTGGACGACATTTCTAAAGGCTCGTCTTGTGTGTTCTGTACCAGGCAATGATGGCACTGAAACTCATTTTGATGAACTTAGGGATGTGTTCCTGCTGCAGACCCGTGACCGAAAGAACCCGCTGATCTACACTGTTTTTACCACCTCAAGTAGTGTATTTCAAGGTTCTGCCGTTTGTCTCTATACGATGAATGACATTCGCCGGGCATTTTTAGGACCTTTTGCCCATAAAGAAGGACCCAATTACCAGTGGGTTCCATTTCAGGGGAAAGTGCCTTACCCACGGCCAGGCATGTGTCCCAGTAAAACATTTGGGAGTTTTGAGTCAACTAAAGGCTTCCCTGATAACGTAATCCAGTTTGCAAGGCACCATCCATTAATGTTTAATCCAGTCACTCCACTGGGAGGCCGGCCGTTGTTCCTGCGAACTGGAATACCATACACCTTCACTCAGATTACTGTAGACCGCGTCAATGCAGCTGATGGACACTACGATGTAATGTTCATCGGGACAGATGTCGGCTCAGTCCTGAAGGTGATCTCTGTGCCCAAAGGAAGCTGGAGTAACACAGAGCTTCTGCTAGAAGAGCTTCAGGTCTTTAAGgattcttcatCTATAATCAGTATGCAGATTTCCTCTAAACGGcAACAGCTGTACGTTGGCGCAGACACAGGTGTTGTCCAGGTGCCTCTGCACCGCTGCAGTATGTACGGTAAAGCTTGTGCCGAGTGCTGCCTGGCTCGAGATCCGTACTGCGCCTGGGACGGACACACCTGCACACGCTACCTGCCAAACACAAAACGGAGGTTCCGGCGTCAGGATGTGAGGAATGGAGATCCTAATGCACTCTGCTCAGGAGACCATCAGAAGCAGCGTGTCCTGGAGAAGAGGCTGTATGCTGTGGATGGAAGCAGCTCCTTCCTGGAATGCATCCCGAAATCACTACAGGCCCAGATTACATGGACCTATCAGAGGCACCCGGAAAACCCACGGGAGGAGGTTCGTCTAGATGACCGTGTTTTGCAGACCGAGCGAGGCCTGTTGCTAAGGCGCGCCGTGCGTAGAGACGGCGGCGTGTATCAGTGTCACGCGATGGAACATGGATTCACCCAAACCCTCCTCGCGATCACGCTTGAGATTTTGCCTTCGGCCGGCTCCTCCCCTTCAGCACCTATCCCTCGCAGTCCCGCCCACTCCCACGCCAATCACGGGCAGTCCACCAATCAAAAACTGTGGTACAGGGACTTCATGCAGTTGGTGGACCACCCAAATTTAAACACGGTCGACCAGATCTGTGAGCAAGTTTGGTCACGCAAGCACAGCCTATCAGGGAAGGGCGCTCCGGATCCAGCTAATGAGGCGCCGGTTCATGACCCGCTGCACTCTAAAAAGTGGAAGCATATAAAAGAAGTCAGGAAAGGGCGAAATCGCAGAACGCATGATGGGAGACCCGCCCCCAGAGCGCCGAGGAGCGCGGGAGAGTAGCGAGGGATGAGAGacggaggaaaaaaagagactgagagacagaaagaaagagcaaaaacCACTGGAGGTGGACAGATTCTCACACAGCATCTCATTCAGTGACTGTTTATCGCCTGTTCTGCTTCTTATTACCCCTGTGATGACACTTCACTGCCTGTTATCAGTCTCTATATACTCTATTGTCCTCATCTCCAGTCTGAAGACTCAATCTAGTGCCCCCACGACCCCAATCCCGCTCCCGCCAGCATCTATTACTCCTGATGCTTATCCAGAAACCCACACTCCATCCATCTGAATACTAACACAAACTCAAGAGGTCCTAAAGTTCAAAAAATCCTTATGAATTGTAACAGGAAAAGCTTTGATCGGAAATGAAAGACACAAAGACGTGCATGCGCTGAGTAAAACACAGGCTCTTGCGGACACACATTGAGTAAATCAGTgcatactctttttttttgttttcatctggGTGTTTGTGCAACATGTGTTCTTAGATTAGATTCTTCTCTAACTTTGGCCCTGAAACAGAGATCTCACAGACCCTTGACTCACCAGCACCATATGAACATCATCACTCTTCTTTCACTGCTAGAAgacttaaaacaaaacatttcgagcaaacaaaagataaaaaaaggagaaaaactgtacatttgtgAAGGTTGAAGCTActgtaagtattttttttttcatgtgacaGTGATTATATACCTTTGTAAATGTAAAGGGTCTGGTGAGCTTTACATTTCTGGCAGTTCTGTAAAGCAGCATAGGTGAATTATTTGGAGTTAGAGAGTTATGTTTCAGACGTTCTGATTATGTGTTGTATAAGACTGAGATGGACACAGCATCAATGTACAGGGGCATTATGGGTAGTAGTATGGTCTGAGACCAGGTgaggaaaaactattttagacACTTTTAGGTCTAAATTTACAACTAaccttttgaaataataataataaaaagtcagaatagttatgtatatgtgtctgtgtacgaaagatttaaatgctttttatacagctctagcatatatatattcactttttttttaagtgatctGCAAgcataatatactgtaatagCACAGCTATGTATTATGCATGCTAGATAATGGGTTAAATCAGGAAACACAGATCAGAGGCCTTCTCTAAAGACAAGAAACAAGAAAAGATACCCAAGAAAAATGCCTTTAGCTCTCGCTCTGACATTTcagatgaatatttaatttaacacattcaGTCTAGCCAATGgtccatttatttttcattgactCTTTCTGGCTTTTGAAAATAGCAGTGTTGAATTTGTcagtaaatgcatgtttacaaACGCTCGATGccaactttttctttctttcttttttattgcgTTGCAAAAGCGGTATGGGAGGGAGTCAGACATATTCTCTAAATTTACCtcggtatttttttttctgcacaaaaTACCATAGTTAGGCTACTGTAGTCATAGTCGCTAATCGCGGTAGCATTATTTTCAATatcattatacaaaaaaaagaagaagaagaagaagaaaccgGAAGTGTGCTGGTCAGCAGCAAGGTA

Function

NR:

description
PREDICTED: semaphorin-3B

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246799.1 True 4555 mRNA 0.46 18 12890474 12919391

Neighbor

gene id symbol gene type direction distance location
si:dkey-20d21.12 NA coding downstream 83872 12803927 ~ 12806602 (-)
LOC122350402 LOC107556499,LOC107669622,LOC107717519,LOC107679589,LOC107711962,LOC108190967 coding downstream 155280 12732214 ~ 12735194 (-)
si:dkey-72l14.3 si:dkey-72l14.3,LOC107679458,LOC107711968,LOC107591777,LOC107669647 coding downstream 267124 12621092 ~ 12623350 (-)
opn7c opn7c,LOC107711973,LOC107707675,LOC107550512 coding downstream 316241 12566263 ~ 12574233 (-)
efhd2 efhd2,LOC107591793,LOC107711975,LOC107550510,LOC107707677 coding downstream 329008 12544391 ~ 12561466 (-)
tmem51a tmem51a,LOC107717531,LOC107669600,LOC107556479,LOC107679674,LOC107711951,LOC107591770 coding upstream 23299 12942690 ~ 12948591 (-)
kazna kazna,LOC107669642,LOC107556484,LOC107591771,LOC107711950,LOC107717500,LOC107680131 coding upstream 29312 12948703 ~ 12982222 (-)
slc16a1b slc16a1b,LOC107669643,LOC107717534,LOC107591766,LOC107711946,LOC107679710,LOC108425094 coding upstream 126010 13045401 ~ 13064523 (-)
mov10b.2 mov10b.2,LOC107711942,LOC107679724,LOC107591756,LOC107717538 coding upstream 356802 13276193 ~ 13286678 (-)
LOC122350377 LOC107562778,LOC107717538,LOC107669657,LOC107711943,LOC107679735,LOC107591842 coding upstream 367363 13286754 ~ 13298975 (-)
G63631 LOC107591782,LOC107669630,LOC107711933,LOC107679511 non-coding downstream 89731 12797379 ~ 12800743 (-)
G63610 NA non-coding downstream 142321 12747899 ~ 12748153 (-)
G63588 NA non-coding downstream 217617 12671344 ~ 12672857 (-)
G63585 NA non-coding downstream 219897 12664305 ~ 12670577 (-)
G63581 NA non-coding downstream 233330 12655087 ~ 12657144 (-)
G63711 NA non-coding upstream 208799 13128190 ~ 13131217 (-)
G63735 NA non-coding upstream 342301 13261692 ~ 13274868 (-)
G63745 NA non-coding upstream 412773 13332164 ~ 13332387 (-)
G63751 NA non-coding upstream 428233 13347624 ~ 13350271 (-)
LOC122350567 NA non-coding upstream 700601 13619992 ~ 13682456 (-)
foxp3a foxp3a,si:ch211-167b20.8,LOC107669635,LOC107731227,LOC107550508,LOC107711972,LOC107679368,LOC107591799,LOC107591800 other downstream 386321 12489197 ~ 12504153 (-)
kcnq2a LOC107679259,LOC107668096,LOC107731192,LOC107550457,LOC108442249,LOC108265949,LOC107711924 other downstream 527370 12342160 ~ 12363104 (-)
G63385 NA other downstream 625941 12263694 ~ 12264533 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 835944 12051357 ~ 12054530 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other downstream 1111223 11778271 ~ 11779251 (-)
zmynd12 zymnd12,LOC107591768,LOC107711949,LOC107679700 other upstream 66263 12985654 ~ 13083372 (-)
tafa3b si:ch211-254n4.3,fam19a3,LOC107711931,LOC107591764,LOC107562776,LOC107669582,LOC102289964,LOC104918365,LOC106582736,LOC105921069,LOC106517667,LOC108231490,LOC106937909 other upstream 266476 13185867 ~ 13246130 (-)
mc3r mc3r,LOC107751459,LOC107669608,LOC107711834,LOC107680356 other upstream 797237 13716628 ~ 13720514 (-)
G63933 LOC107556304,LOC107751435,LOC107594508 other upstream 890037 13809428 ~ 13863250 (-)
LOC122350784 zgc:162939,LOC107602843,LOC107674500,LOC107724903 other upstream 1466209 14385600 ~ 14455243 (-)

Expression


Co-expression Network