skia (ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903)


Basic Information

Item Value
gene id skia
gene name ski,skia,LOC107548407,LOC107699765,LOC107657901,LOC107599811,LOC107710903
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8746887 ~ 8808599 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246846.1
agagagggagagagcgagcgagaggcTGTGCTCACTGACTCAGTCATACTGAACTGCAGGGGCAGAGGAGCGGAGGCGACGCGCCGTGTCCGGCTGCAGCGATCTCTACTCGCAGCGAAAAATACGGATTTAAAGTTGGCGGATTGTGTATTCGACTCCTGAATTTGACGTGGGACAAGTTCGGCTCCCCCGTGGGATAGTTTTGCTGCAACTTGCGCGCTTTTGCCTGTGTTACACTTGAGTTTCCCGTACGCGTCTGTCTGTGGATATGGACAGAAGAGAGCCCGCTGCAGGGGAAGAAGACGCGCCGGTGGAAACCTTCGTCTGAGCGGGGATTTGATGAAGCCCTATCGGCCTTCTTGCGCTTGTTTTCACAGACTTGGATTTCGAGACGCGGAACCAGGACCTTTGAGTCGTATTTCTCGCCAGACGCTCGGTTTCAACGACAACGCCGTGCGCGAAACATGGAAACAGTAGCGCGACAGAGTTTCCAGCCTCACCCGGGACTGCAACAAACTCTCAAACAGTTTCACCTGAGCTCCATGAGCTCTCTCGGCGGACCGGCCGCGTTCTCGGCCAGATGGCAGCACGACCTGCTCTTCAAGAAGGACGGCAAAGACGTCCCGGAGCCCGTGCTGCACCTCCCCCCCATGCAGCCTCCTCCGGTGATGCCCGGGCCGCTCTTCATCCCGTCGGACCGCTCCACCGAGAGGTGCGAGACGGTCCTGGAGGGCGAGACTATCTCGTGCTTCGTGGTGGGCGGCGAGAAGCGTCTGTGCCTGCCGCAGATCCTCAACACGGTGCTGCGGGATTTCTCGCTCCAGCAGATCAACTCGGTGTGCGACGACCTGCACATCTACTGCTCGCGCTGCACCGCCGACCAGCTGGAGATCCTGAAGGTGATGGGCATCCTGCCGTTCTCCGCGCCGTCCTGCGGACTCATCACCAAGACGGACGCGGAGCGCCTGTGCAACGCGCTCATCTACGGGGGGACGTACCCACCGCACTCCAAGAAGGAGCTGTACGGCTCCATCGAGCTGGAGCTCACCGAGAAGAGCTTCAAGATCTATCACGAGTGCTTCGGGAAGTGTAAGGGTCTGCTGGTCCCGGAGCTCTACACGAGTCCTAACGCGCCCTGCATCCAGTGCATGGACTGCAGGCTCATGTACCCGACCCAGAAATTTGTGGTGCACAGTCACAAATCGCTGGAGAACAGGACTTGCCATTGGGGCTTTGACTCGGCCAACTGGAGGGCGTATGTCCTCCTGAGCCCGGATTACACGGGGAAAGAGGAGAAAGCGCGTCTGGAGCAGCTCCTCGATGACATTAAGGAGAAATTTGACTTCGCCAATAAATACAAGCGGAAAGCATCACGGGCGTCTGATCCCATTCCTGCCAAGAAGTCCAAACACGATGACTTTCCAGCACAGTCGCCCTCAGGAGACAAAGACAAGCAACCCGATTGGCTACGATCCCTCTCTGCATCAGCCAATAAGGGGCTCAACTGCATTCAGCCCAGACAGAGACCATCTGCCTTCCGGCCATGGTCTCCAAACATCTCTGTTGGTGATAAGGAGGGAGGTGGCAGGACTGCTAGCATGTTACGTGACAGCTTCTACAACTACAAGAGCCTGGAGAGCGCCGTGGCCCCCAACGTAGCTCTGACCCCCCTCCAGAAAGGAGGGCAAGCCTCTCCTACCACCCCGAGCAGTTCACACCCACATGGGGCGGAAAGCGAAGGCAACAATcgagggaggaagaggaggctgACGGGTGAGACCCACCCCAGCCCACAACCCTGCCCTTCGGCCACTGCCAGCAAGCCACTTCCGCCCTCTCAGGAGGAGAGGGACTCGGACGTGGAGGTGGAAGTGGAGAGCCGTGAGGAATtcacCTCATCGCTTTCCTCACTCTCCTCCCCATCTTTTACATCCTCGAGCTCTGCCAAGGACTTGAGCTCTCCCTCTGGCCCTGGAGCCATCTTACCAGCAGTTCTGACACCAGCCAGCGGGCCCCCTGAGGGCCCCCTGGTGTCTGGAGGGGAGGGACATGCCATGACAAACCTGGAGTCGGAGCTGGAGACGCTGAGACAGGCACTTGACAACGGCTTGGATTCAAAAGAGTCGAAGGAAAAGTTTCTACATGAGATAGTGAAGATGAGGGTAAAACAGGAAGAGAAGCTGGGATCCGCTTTACAGGCCAAACGGAGCCTCCAGCAGGAGCTTGAGTTTCTCCGTGTCGCTAAGAAGGAGAAGCTCCGTGAAGCAACCGAGGCAAAGAGGAACCTGCGCAAGGAAATTGAGCGTCTGCGTGCTGAAAGCGAGAGGAAAATGAGAGAAGCCAATGAGTCACGTATACGGCTGAAGAGAGAGCTTGAGCAGGCCAGACAGCTACGAGTGTGTGACAAGGGCTGTGAGGCCGGCCGTCTGCGAGCCAAGTACTCTGCACAGATTGAAGATCTGCAAGTAAAGTTGCAGCACGCCGAGGCAGACCGAGAGCAGCTGAGAGCCGATCTGATGCAGGAGAGGGAGGCAAGGGAGCACCTGGAGAGAGTGGTCAAGGAGCTACAGGAACAGCTGTGGCCCAAAAGCCCCAGCAAGAACGGCACAGACGCACCACCACCATCCGCCAAAGACTCCAACTAATCCTCTATCTCTTGACTCCACCCAAATCCACATCAACACCGCCCTGATTGACAGCACCAACCGCCCAATCATGTCAGCTAGCATGCGGGCGAGCCCCGCCCACTTGCCTCTTAGCCAGCGCAAACCCGGAAGTATCCTGAACGTTTTTTGATGGACTTCAGACACAGTTTTACTTCGAGAGCACTGAAATGCACCTCGCCTCCAACaagacgtaaaaaaaaaaaagttcaatcgGAAAGGAAGAAGCCAATAGCACAAAAGCTAACTGTGCCTGaaactgaatacattttgaaatgaagaCTTTTCTATGACAAACAAATTGgtgataatgataaaaaaaattttacacAGCAATTTTTAAGCATGCTGTCGGCCCCACGTTGTTATCAAAGAGACACGGACTcaacatcttcatcatcatcccATCAGAAATTCCTGTTtcctttttcctctctctttcatttcGAGGAACTAAGATGaaaatcattttgtaataaGCTATTTAAGAGACTTGTTAGCGAGCGTGGatgagataaaaaagaaaagcgacTTGTCAGAGCCTCAAATTTCCCCCTTTTACATGTACACACATGTCATGCTGTTTAAAAGAAGCCATGGAGACAAATGGTTACACACACTTGTATCTTTAACAATGGTAAAGAGATACTGGTCAGGAGATTGTTGAAGGGCTTTGGAGAGCTAGAGGTGGAGAAGTTCAGCCCTGTAAAAAGGGAGAGAGATTTGTATTCAAGTAAGTGTTATGATCAAGCCAGAGCACTTTCTTTTAATGGCAAACAAACGCTCCCCTCACAAGCTGTCGTGTGATATCGAGGGTCAAAACCCGTCGGCGGATCTTGAGATCGTGGTCAGTGTGGAATCGGAGGTTTGCGGCTCCTGCTCTCCGTGAGGGTTCGGGTTTTCTTCTCGTCACATGCGTACAACTTCTCCGTGGGCTGAGGTGCTGACAGCTGGCCCGGCTCACAAATGTGGGCGGCCATTTTTGGGAATAAACtaaaagcatcaaaaaaaaatacagcttctAGGGCAGGAGGTGTCATGTGATCAAGAACCacaaattgttctttttaagtaaattataatatgtaaatatgaaaatgtttctttttttttcttttcgctttgtttttttttttttttttttttactttacaataaTGAATCGCACTTTGTCATTACAAAATACTGTCTAAATGCATTACGCTCCCACACTCTCCCACACATTTATCTCAGAGAGTTTTTAGTATTCCTCAgtataaaattgaaataaacattttgttaattatatgcAGTTctaataaatgcaatgtaatcATGTGTTTAAGACAaactattgtaaataaaaccgcaagaataaaaaaagaaaggttccACATGCTTGCTTGCTGAAATGTGGACGGCGCACGCAGCCGTTCACTCAATCTGACTTTAATTCAACATTTATCATAGTTATCGATATATAATCGTTGCTAAAGTGTTATTGTTACTGTCCTGGATTCCTACAGGTTTTGAACGGTTTCCGAATCAAATTTAAAACCGTTCAGAATGAATAGGACACACAAATTGTCATGCATTGGTAAAAGGGAGTCTAAATATCAATGCAGGTGCTCCTCTCGGCTGTGAGCAAGAGCGTATTACTGTGTACAAAACGAGACGAGGATGGGTAAACGAACGAACGGAAGCCTAGATggtttaataaatgcatctttaaatGCTCACACACTTAGCTGAGATAGATTTTGttgaaaatacatatattttataagtgATTTATATACATTGGGTACAATGCAATCAGAATGTATGTTACGTTTTGgctcttttcattttgttgttgttgttgttgttataacgGATGTTTTTTCAGAttgtgtgaatattttattgcttATGTTCCTTCTTTCAATAGCAAGCTTATGTAATTTCTTTCATATGCAtggaatttaaaagaaaaaaaagataaagtcTGCCATTCGTATATTCATTATTGGGCATTAAAACTGTATATGTacgttttttattgtgttatgcaatataaagcaattttaatcttgtttttaactacaaaggaaaacaaaaccCTCTTAACAATAAATTTCAGCTCTTAACAATCTTAAACGCAACATTAACGGCATTACTCTTGGGCTAAATACAAACCTTATGTGCATATGCAATGCTGGAGACCCTCAAGTGCCTGTCTTTGGGCCCTTGGGGTTCCAGAAGAGGAACAATTATCGAGCCCGTTTCCATGGTGACCGACTGTAAGGCGCATTGAACTGCTTCAGACAGCGGTCGGATGGTGAGAGCGGGACATCCCATTTGCACTGTCATTTGGGGGAGCCTCTTCGGCTCGCCCCATTTTGCCAGAACGAACTTGACTATCATTGCTTAAGAGCAAGCCGCAGCTTATTTGATAGGTTTTAATGCCATTTTGTCAGTAttcctttgatttttttttcttcttcgagaatcaatgaataattaaataaaagaaaaatgcatagcAGAGTTTAATGCTCCAATTGCCACTGGTAAAGAAGAATTTAAATCTTATACTAAGACAGCTTTTAAATGTATGCCGgaataaataaactcttttctttctctgtttttaaggaattaaaaaaaaatatattcaagagGTTACTTTTGCTATAGATGTAAAAAGAGCCTTTGAAACGATATGATACATTGCCCTGTCCTGTACATTGCAGGAAGATACTAAACGGGGGTCTAAAGGAAGCTCAGTGTCTTAACAGTAGCAAGAGGCTGTGCGTTTttacagaccaaaaaaaaagataaaaatgaaaaaaaaaactttccgaTGAGgttttgtagttgtttttacATGCAAATTGATATGTGTAGTTTACTTTGTTCGCGGTTTTCTATGAAAAAGGGAGAAATTGATCACAGAGGCTCCTTTGCTCCCAGTATAATACTaaaaatgtggatttttttctaaaagagcCATTTTTTgctaacacaaaaaaagatctaAAATAGCAATAACGACATAACATCACTGATAAATGAGCAGGATTAGCCAGTCTGACGACGAAAGTACAAATTCACCAATGTATAtagctgttttcttttcattttacaaaaaattgtatcataaatgtatattgtgtttctttctctttttttcagaatgagaaaaaaaaaccttacataatagttgttatattttatgttgtgtttttaaaaacaaaaagaaagaaaatgttttaaaaaactattatttcaaAGGTTGTATTCCCAATGCAAGCATATTCAGTCCTTTATCctgcttttttcccttttttgtgCTACAAAGAATAATAGTAATGTTCAGTAAAATCGTTATGgtaaatgcctttttttctgttatcaATGTTTTGTTACGTTCAGCTAAATATCAGATACATTGGATTCTGGTTGAATCAGACATTCAGATTCTTATTTTAACAATCTGTTCTCCTTTTTTTCATGCCGATATATCTTCTTAGCCCTTCACTGCTGCTATAACAATATACTATAAACTTTGCAActcttgaaattatttttatgtaagaGATTAATGTATGCTTTCTTCTTCTACTGATGCCGCTTATACACTTGGATCTGGCCAATTTTTCCCTCTTAGACGTCCCCCTTTCCCTTCACATGGACTATAATGTAAGATAGAGAGCTCTATGAGATTAGAGTTGAAAGTAGTTCGGCTTATATACTGCAGTGTCAGGATGTACAGTGTATAGACccataatcaaaaataaagttgtttgTCCAGAAA

Function

symbol description
skia Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and SMAD binding activity. Acts upstream of or within several processes, including cardiac conduction; cartilage development; and heart looping. Located in nucleus. Is expressed in several structures, including brain; lens; presumptive diencephalon; solid lens vesicle; and tail bud. Used to study craniosynostosis. Orthologous to human SKI (SKI proto-oncogene).
ski Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; enzyme binding activity; and zinc ion binding activity. Involved in several processes, including SMAD protein signal transduction; negative regulation of osteoblast differentiation; and negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway. Acts upstream of or within negative regulation of Schwann cell proliferation. Located in PML body and centrosome. Part of protein-containing complex.

NR:

description
ski oncogene

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0051216 cartilage development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0061337 cardiac conduction biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046332 SMAD binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246846.1 True 6441 mRNA 0.45 7 8746887 8808599

Neighbor

gene id symbol gene type direction distance location
rab3c rab3c,LOC107599832,LOC107700568,LOC107743864 coding downstream 140721 8600995 ~ 8606166 (-)
ndufaf2 ndufaf2,LOC107752447,LOC107743894,LOC107657848 coding downstream 266156 8478681 ~ 8480731 (-)
depdc1a depdc1a,LOC107657894,LOC107752443,LOC107599802,LOC107548279,LOC107699654,LOC107716419 coding downstream 270340 8469042 ~ 8476547 (-)
LOC122351041 rpe65,rpe65c,LOC107657893,LOC107752442,LOC107700531 coding downstream 279674 8463209 ~ 8467213 (-)
osbpl9 osbpl9,LOC107699596,LOC107657891 coding downstream 289653 8431193 ~ 8457234 (-)
prkcz prkcz,LOC107710919,LOC107743854,LOC107548418 coding upstream 11757 8820356 ~ 8911987 (-)
st6galnac5b st6galnac5b,LOC107599835,LOC107657873,LOC107710911,LOC107743856,LOC107550326,LOC107700626 coding upstream 114094 8922693 ~ 8934751 (-)
LOC122350776 LOC107599836,LOC107657909,LOC107710921,LOC107743853,LOC107548462 coding upstream 164194 8972793 ~ 8975940 (-)
tnni3k tnni3k,LOC107743849,LOC107550356,LOC107699804,LOC107657874,LOC107710912 coding upstream 182744 8991343 ~ 9001962 (-)
fpgt fpgt,LOC107699845,LOC107585822,LOC107548491 coding upstream 193622 9002221 ~ 9006003 (-)
LOC122350893 NA non-coding downstream 6934 8712037 ~ 8739953 (-)
G62120 NA non-coding downstream 238764 8507891 ~ 8508123 (-)
G62076 NA non-coding downstream 316752 8427285 ~ 8430135 (-)
LOC122351107 NA non-coding downstream 477670 8253538 ~ 8269217 (-)
G61967 NA non-coding downstream 772867 7879417 ~ 7974020 (-)
G62239 NA non-coding upstream 104883 8913482 ~ 8914004 (-)
G62235 NA non-coding upstream 110159 8918758 ~ 8920904 (-)
G62241 NA non-coding upstream 112882 8921481 ~ 8921696 (-)
LOC122351086 NA non-coding upstream 127479 8936078 ~ 8942255 (-)
G62255 NA non-coding upstream 159690 8968289 ~ 8972773 (-)
pola2 pola2,LOC107599808,LOC107657899 other downstream 89601 8652304 ~ 8657286 (-)
mrps36 mrps36,LOC107657871,LOC107599810,LOC107699743,LOC107743861,LOC107548364,LOC107710901 other downstream 96904 8647270 ~ 8649983 (-)
eps15 eps15,LOC107752431,LOC107599798,LOC107743869 other downstream 330334 8392345 ~ 8416553 (-)
LOC122350139 elavl4 other downstream 514113 8117008 ~ 8232774 (-)
spata6 LOC107657881,LOC107699473,LOC107549716,LOC107757996,LOC107599047 other downstream 1059325 7677496 ~ 7687562 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other upstream 448644 9257243 ~ 9262826 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other upstream 891795 9700394 ~ 9708621 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other upstream 1146082 9954681 ~ 9969485 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other upstream 1186948 9995547 ~ 10041769 (-)
smim24 smim24,LOC107580287 other upstream 1436597 10245196 ~ 10248156 (-)

Expression


Co-expression Network