vdac3 (vdac3,LOC107754399,LOC107671013,LOC107560056)


Basic Information

Item Value
gene id vdac3
gene name vdac3,LOC107754399,LOC107671013,LOC107560056
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1996550 ~ 2008100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246847.1
GAAAAATAGAAGGCTGCAGATTGCGCATGCGCGCTCCGCGTCTGTTCTCCTTCAGCCTGTCCTTTCGCGCTGTGCAGAAACTCCGTCAGGAACACCGACACGGCAAACACGcAAACATGTCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCTGCCAAAGACATCTTCAGCAAAGGATACGGCTTTGGAGCTGTAAAGTTGGACCTGAAGACCAAGTCTCAGAGTGGAGTTATGGAGTTCTCCTCCGGCGGCTCCAGTAACACAGACACCGGAAAAGCGGCTGGAAACCTGGAGACCAAGTACAAAGTGAAGGATCTGGGCTTGACTTTGAACCAGAAGTGGAACACAGATAATGTTCTGACCACTGAAGTGACTCTGGAAGATCAGCTGGCCAAAGGTCTGAAGCTGGGACTGGACACGTCATTCGTGCCCAACACTGGGAAGAAGAGCGGTAAGCTGAAGACGGGCTATAAGCGTGAATACATGAACGTGGGCTGTGATATAGACTTCGATCTGGCCGGACCCACGATCCACGCCGCAGCCGTCCTGGGTTACGAGGGCTGGCTGGCCGGGTATCAGATGGCCTTCGACACGGCCAAGTCTAAACTGGCCCAGAACAACTTCGCTTTGGGCTACAAGGCAGGAGACTTCCAGCTACACACCAATGTTAATGATGGCACGGAGTTCGGCGGCTCCATCTATCAGAAGGTGAACGATCAGTTGGAGACGGCGGTCAATCTGGCCTGGACCGCAGGGAGCAACAACACGCGCTTCGGCATCGCTGCCAAATACCAGCTCGATAAAGACTCTTCCATCTCCGCCAAAGTCAACAACGCTAGTCTGGTTGGAGTAGGATACACGCAGAGCCTCCGGCCAGGTGTGAAGCTCACTCTGTCCGCTCTGATCGATGCTAAGAACTTCAACGCCGGAGGACACAAGGTGGGCATGGGCTTCGAGCTGGAGGTGTAACGACACGCAGAGCAGAGACGCACTGACAGGAAGTAAAGAAACACGGGGAGCTGACGGCTGACTTCGGCCCCTGCGGAAACACGTCGCCCTTGACCCCCATGATTCCTCCTAAACTAATCTGGCCTTAAACCCCCCGTAGAACCAATAAGAAACAGGATCAGCAGTCACATGATTCCTGTCCACACCGATCCTCCATCACCAGCTCACTATTCGACCACAGCTTCCTATTGGTCAACGTACAGCGCTTTTAATGTGACACACGTGGCACCatatcatttcctttttttttttcatttttaaactagATAATGTAGTTTCTGGTTTGTGAGCGGTCACACAGGACCTGACGTGTACGTTGTGCTTTTAGTTCACGCGTTTAATGTTGAATCAGAAACGTATCTCTGGATGTCGAGTCCCTCACGTTCATTGCCAAATGCGTAATATTTTATCACGGGTttgttgtctgtgtttgtggGCTGAAATTTTTAGAGGaaggtctttttttgtttttattcccataaaaaaagtgatttatgttCAGCGGAGGAACAGAAGAAGAAACTGATGTTGTGGAACTCAATAAAGAAGAATGTTGACTGAA
>XM_043246848.1
AAAATAGAAGGCTGCAGATTGCGCATGCGCGCTCCGCGTCTGTTCTCCTTCAGCCTGTCCTTTCGCGCTGTGCAGAAACTCCGTCAGGAACACCGACACGGCAAACACGcAAACATGTCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCTGCCAAAGACATCTTCAGCAAAGGATACGGCTTTGGAGCTGTAAAGTTGGACCTGAAGACCAAGTCTCAGAGTGGAGTTGAGTTCTCCTCCGGCGGCTCCAGTAACACAGACACCGGAAAAGCGGCTGGAAACCTGGAGACCAAGTACAAAGTGAAGGATCTGGGCTTGACTTTGAACCAGAAGTGGAACACAGATAATGTTCTGACCACTGAAGTGACTCTGGAAGATCAGCTGGCCAAAGGTCTGAAGCTGGGACTGGACACGTCATTCGTGCCCAACACTGGGAAGAAGAGCGGTAAGCTGAAGACGGGCTATAAGCGTGAATACATGAACGTGGGCTGTGATATAGACTTCGATCTGGCCGGACCCACGATCCACGCCGCAGCCGTCCTGGGTTACGAGGGCTGGCTGGCCGGGTATCAGATGGCCTTCGACACGGCCAAGTCTAAACTGGCCCAGAACAACTTCGCTTTGGGCTACAAGGCAGGAGACTTCCAGCTACACACCAATGTTAATGATGGCACGGAGTTCGGCGGCTCCATCTATCAGAAGGTGAACGATCAGTTGGAGACGGCGGTCAATCTGGCCTGGACCGCAGGGAGCAACAACACGCGCTTCGGCATCGCTGCCAAATACCAGCTCGATAAAGACTCTTCCATCTCCGCCAAAGTCAACAACGCTAGTCTGGTTGGAGTAGGATACACGCAGAGCCTCCGGCCAGGTGTGAAGCTCACTCTGTCCGCTCTGATCGATGCTAAGAACTTCAACGCCGGAGGACACAAGGTGGGCATGGGCTTCGAGCTGGAGGTGTAACGACACGCAGAGCAGAGACGCACTGACAGGAAGTAAAGAAACACGGGGAGCTGACGGCTGACTTCGGCCCCTGCGGAAACACGTCGCCCTTGACCCCCATGATTCCTCCTAAACTAATCTGGCCTTAAACCCCCCGTAGAACCAATAAGAAACAGGATCAGCAGTCACATGATTCCTGTCCACACCGATCCTCCATCACCAGCTCACTATTCGACCACAGCTTCCTATTGGTCAACGTACAGCGCTTTTAATGTGACACACGTGGCACCatatcatttcctttttttttttcatttttaaactagATAATGTAGTTTCTGGTTTGTGAGCGGTCACACAGGACCTGACGTGTACGTTGTGCTTTTAGTTCACGCGTTTAATGTTGAATCAGAAACGTATCTCTGGATGTCGAGTCCCTCACGTTCATTGCCAAATGCGTAATATTTTATCACGGGTttgttgtctgtgtttgtggGCTGAAATTTTTAGAGGaaggtctttttttgtttttattcccataaaaaaagtgatttatgttCAGCGGAGGAACAGAAGAAGAAACTGATGTTGTGGAACTCAATAAAGAAGAATGTTGACTGAA
>XM_043246849.1
GGCTGCAGATTGCGCATGCGCGCTCCGCGTCTGTTCTCCTTCAGCCTGTCCTTTCGCGCTGTGCAGAAACTCCGTCAGGAACACCGACACGGCAAACACGATCATGTCTGAGAAAGGACAGAAGCAGAAAGGAAGCAGTGCGAGCTGCCACCACTGCAAGCCAAAGACATGCGcAAACATGTCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCTGCCAAAGACATCTTCAGCAAAGGATACGGCTTTGGAGCTGTAAAGTTGGACCTGAAGACCAAGTCTCAGAGTGGAGTTATGGAGTTCTCCTCCGGCGGCTCCAGTAACACAGACACCGGAAAAGCGGCTGGAAACCTGGAGACCAAGTACAAAGTGAAGGATCTGGGCTTGACTTTGAACCAGAAGTGGAACACAGATAATGTTCTGACCACTGAAGTGACTCTGGAAGATCAGCTGGCCAAAGGTCTGAAGCTGGGACTGGACACGTCATTCGTGCCCAACACTGGGAAGAAGAGCGGTAAGCTGAAGACGGGCTATAAGCGTGAATACATGAACGTGGGCTGTGATATAGACTTCGATCTGGCCGGACCCACGATCCACGCCGCAGCCGTCCTGGGTTACGAGGGCTGGCTGGCCGGGTATCAGATGGCCTTCGACACGGCCAAGTCTAAACTGGCCCAGAACAACTTCGCTTTGGGCTACAAGGCAGGAGACTTCCAGCTACACACCAATGTTAATGATGGCACGGAGTTCGGCGGCTCCATCTATCAGAAGGTGAACGATCAGTTGGAGACGGCGGTCAATCTGGCCTGGACCGCAGGGAGCAACAACACGCGCTTCGGCATCGCTGCCAAATACCAGCTCGATAAAGACTCTTCCATCTCCGCCAAAGTCAACAACGCTAGTCTGGTTGGAGTAGGATACACGCAGAGCCTCCGGCCAGGTGTGAAGCTCACTCTGTCCGCTCTGATCGATGCTAAGAACTTCAACGCCGGAGGACACAAGGTGGGCATGGGCTTCGAGCTGGAGGTGTAACGACACGCAGAGCAGAGACGCACTGACAGGAAGTAAAGAAACACGGGGAGCTGACGGCTGACTTCGGCCCCTGCGGAAACACGTCGCCCTTGACCCCCATGATTCCTCCTAAACTAATCTGGCCTTAAACCCCCCGTAGAACCAATAAGAAACAGGATCAGCAGTCACATGATTCCTGTCCACACCGATCCTCCATCACCAGCTCACTATTCGACCACAGCTTCCTATTGGTCAACGTACAGCGCTTTTAATGTGACACACGTGGCACCatatcatttcctttttttttttcatttttaaactagATAATGTAGTTTCTGGTTTGTGAGCGGTCACACAGGACCTGACGTGTACGTTGTGCTTTTAGTTCACGCGTTTAATGTTGAATCAGAAACGTATCTCTGGATGTCGAGTCCCTCACGTTCATTGCCAAATGCGTAATATTTTATCACGGGTttgttgtctgtgtttgtggGCTGAAATTTTTAGAGGaaggtctttttttgtttttattcccataaaaaaagtgatttatgttCAGCGGAGGAACAGAAGAAGAAACTGATGTTGTGGAACTCAATAAAGAAGAATGTTGACTGAA
>XM_043246850.1
CTGCAGATTGCGCATGCGCGCTCCGCGTCTGTTCTCCTTCAGCCTGTCCTTTCGCGCTGTGCAGAAACTCCGTCAGGAACACCGACACGGCAAACACGATCATGTCTGAGAAAGGACAGAAGCAGAAAGGAAGCAGTGCGAGCTGCCACCACTGCAAGCCAAAGACATGCGcAAACATGTCCGTCCCTCCTGCGTACGCTGACCTCGGCAAATCTGCCAAAGACATCTTCAGCAAAGGATACGGCTTTGGAGCTGTAAAGTTGGACCTGAAGACCAAGTCTCAGAGTGGAGTTGAGTTCTCCTCCGGCGGCTCCAGTAACACAGACACCGGAAAAGCGGCTGGAAACCTGGAGACCAAGTACAAAGTGAAGGATCTGGGCTTGACTTTGAACCAGAAGTGGAACACAGATAATGTTCTGACCACTGAAGTGACTCTGGAAGATCAGCTGGCCAAAGGTCTGAAGCTGGGACTGGACACGTCATTCGTGCCCAACACTGGGAAGAAGAGCGGTAAGCTGAAGACGGGCTATAAGCGTGAATACATGAACGTGGGCTGTGATATAGACTTCGATCTGGCCGGACCCACGATCCACGCCGCAGCCGTCCTGGGTTACGAGGGCTGGCTGGCCGGGTATCAGATGGCCTTCGACACGGCCAAGTCTAAACTGGCCCAGAACAACTTCGCTTTGGGCTACAAGGCAGGAGACTTCCAGCTACACACCAATGTTAATGATGGCACGGAGTTCGGCGGCTCCATCTATCAGAAGGTGAACGATCAGTTGGAGACGGCGGTCAATCTGGCCTGGACCGCAGGGAGCAACAACACGCGCTTCGGCATCGCTGCCAAATACCAGCTCGATAAAGACTCTTCCATCTCCGCCAAAGTCAACAACGCTAGTCTGGTTGGAGTAGGATACACGCAGAGCCTCCGGCCAGGTGTGAAGCTCACTCTGTCCGCTCTGATCGATGCTAAGAACTTCAACGCCGGAGGACACAAGGTGGGCATGGGCTTCGAGCTGGAGGTGTAACGACACGCAGAGCAGAGACGCACTGACAGGAAGTAAAGAAACACGGGGAGCTGACGGCTGACTTCGGCCCCTGCGGAAACACGTCGCCCTTGACCCCCATGATTCCTCCTAAACTAATCTGGCCTTAAACCCCCCGTAGAACCAATAAGAAACAGGATCAGCAGTCACATGATTCCTGTCCACACCGATCCTCCATCACCAGCTCACTATTCGACCACAGCTTCCTATTGGTCAACGTACAGCGCTTTTAATGTGACACACGTGGCACCatatcatttcctttttttttttcatttttaaactagATAATGTAGTTTCTGGTTTGTGAGCGGTCACACAGGACCTGACGTGTACGTTGTGCTTTTAGTTCACGCGTTTAATGTTGAATCAGAAACGTATCTCTGGATGTCGAGTCCCTCACGTTCATTGCCAAATGCGTAATATTTTATCACGGGTttgttgtctgtgtttgtggGCTGAAATTTTTAGAGGaaggtctttttttgtttttattcccataaaaaaagtgatttatgttCAGCGGAGGAACAGAAGAAGAAACTGATGTTGTGGAACTCAATAAAGAAGAATGTTGACTGAA

Function

symbol description
vdac3 Predicted to enable voltage-gated anion channel activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in adaxial cell; musculature system; nervous system; somite; and trigeminal placode. Orthologous to human VDAC3 (voltage dependent anion channel 3).

NR:

description
voltage-dependent anion-selective channel protein 2-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15041 VDAC3; voltage-dependent anion channel protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246847.1 False 1572 mRNA 0.50 10 1996550 2008100
XM_043246848.1 False 1567 mRNA 0.50 9 1996550 2008098
XM_043246849.1 True 1634 mRNA 0.51 11 1996550 2008089
XM_043246850.1 False 1629 mRNA 0.51 10 1996550 2008087

Neighbor

gene id symbol gene type direction distance location
plat plat,LOC107754398,LOC107657211,LOC107671043 coding downstream 31497 1947141 ~ 1965053 (-)
si:dkeyp-117b11.1 LOC107670989,LOC107657213,LOC107754414,LOC107722857,LOC107560032,LOC107559594,LOC107559561 coding downstream 59678 1927729 ~ 1936872 (-)
cltcl1 LOC107559593,LOC107670971,LOC108412499 coding downstream 69828 1880738 ~ 1926722 (-)
si:dkey-178e17.1 slc25a1,LOC107754397,LOC107670994,LOC107657208,LOC107722854,LOC108412497 coding downstream 117651 1857920 ~ 1878899 (-)
si:dkey-178e17.3 LOC107754395,LOC107671045,LOC107657210,LOC107722861 coding downstream 144011 1837123 ~ 1852539 (-)
rpl6 LOC107699672,LOC107671003,LOC107559598 coding upstream 33454 2041554 ~ 2044605 (-)
acaa2 acaa2,LOC107671002 coding upstream 38016 2046116 ~ 2055183 (-)
seta seta,LOC107699670,LOC107752982,LOC107754404,LOC107560061,LOC107671021 coding upstream 63789 2071889 ~ 2075596 (-)
zdhhc12a LOC107699641,LOC107560045 coding upstream 68047 2076147 ~ 2081503 (-)
slc25a25a slc25a25a,LOC107671014,LOC107754405,LOC107699669,LOC107560063,LOC108430373,LOC107559565 coding upstream 73941 2082041 ~ 2089293 (-)
G60473 NA non-coding downstream 1805 1991335 ~ 1994745 (-)
G60471 NA non-coding downstream 7997 1987773 ~ 1988553 (-)
G60237 NA non-coding downstream 146617 1849488 ~ 1849933 (-)
G60204 NA non-coding downstream 216197 1726225 ~ 1780353 (-)
LOC122349999 NA non-coding downstream 231007 1717401 ~ 1765543 (-)
G60487 dynll1,dyl1,LOC107559583,LOC100698873 non-coding upstream 29600 2037700 ~ 2039825 (-)
G60510 NA non-coding upstream 115958 2124058 ~ 2124341 (-)
G60519 NA non-coding upstream 158832 2166932 ~ 2168247 (-)
G60530 NA non-coding upstream 241242 2249342 ~ 2253090 (-)
G60532 NA non-coding upstream 274438 2282538 ~ 2282891 (-)
pi4kab pi4ka,LOC107574565,LOC107671001,LOC107722847,LOC108440297 other downstream 174900 1732864 ~ 1821650 (-)
LOC122349998 sh3glb2b,LOC107748508,LOC107681863 other downstream 234001 1749062 ~ 1762549 (-)
LOC122350657 pi4ka,pi4kab,LOC107671001,LOC108440297,LOC107698013,LOC107722847,LOC107559589 other downstream 389941 1561546 ~ 1606609 (-)
G60220 NA other downstream 415934 1576805 ~ 1580616 (-)
LOC122350266 dgcr6,LOC107572069,LOC107721026,LOC105899531,LOC103029434 other downstream 639597 1349171 ~ 1356953 (-)
c8h22orf39 si:ch211-51h9.6,LOC107699642,LOC107560060,LOC107670995,LOC107753003,LOC107754424,LOC107559584 other upstream 51294 2059394 ~ 2061481 (-)
LOC122351111 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 other upstream 123269 2131369 ~ 2162003 (-)
G60564 pxnb other upstream 452831 2460931 ~ 2464371 (-)
bicdl1 bicdl1,LOC107553048 other upstream 513114 2521214 ~ 2552187 (-)
rad9b LOC105891618,LOC107713043,LOC107671006,LOC107552191,LOC107714555 other upstream 774520 2782620 ~ 2823826 (-)

Expression


Co-expression Network