naif1 (naif1,LOC107559603,LOC107753004)



Basic Information


Item Value
gene id naif1
gene name naif1,LOC107559603,LOC107753004
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2096159 ~ 2103906 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043246917.1
GTCACCGTCAATGGTAAACCTAAGCCAATGGGATTCGCAAGAGGCCACGAATGGGTGGGGCTTCAGCCATTTGCGTCCGCAAACGTTGTTGGAAGAGAAGTCGATTCAAGAAGCCATTACGCTGCGCAATAGTGTCAGGACAAAAACGTACTATTTTTACGTATTCTACGCAATTTTACATCACCCCCCCCTCCGTAAGTCCAATTAAGCACTTGCTAATGGCATCTCAGGCCAAAAAGAGGAAAACTAATTTCTCCGAAAGGGAGGTGGAGATCATCGTGGAGGAGATGGAgaagcaaaaacacattttggtgAATCACTTTAACGCGGGCGTCACGCACATCGCCAAGAACAGCGCGTGGACGGAGATCCTGAAGCGCGTGAACGCCGTGAGCACCTGCCAGCGCGAGCTCGCGGAGGTCAAGAAGAAATGGTCCGACCTCAAGACGGAGGTGCGGCGCAAAGTGGCCCAGGCGCGCGCGGCCATGGAGGGCACGGGCGACTGCGGCAGCGTTCCCGTCATCCTCAGCTCCATGCAGCAGCGCATCTGCAACCTGCTGGGAGAGGCCACCATCATCAGCCTTCCCGCGGCGGAGGCTGCCGCCGAGATCACGGTGCCCCTGGgctccgccgccgccgccgcgtTGACGCAAAGTAAGACACTGGCGTTACCGCTGCGCATTCAGCCGGCGTCTGCAGCGGCGTGCGAGATAAAAACCCTTGAAGCCGAGACGACGTACCACACGCTGGAGGAGGGCATGGTGGAGTACTGCACCACCGAGGCGCCGGTGACCGTCACGGCAGAGGCTCCGGTGGAGATGCTGGCGCAGGCCGAGTGCAAGCCGCAGGAGCTGAAGAGCCGCATCGCGCTCAACTCGGCCAAGCTGCTGCAGGAGCACCGCGTCACCAACCTGCACGTGCGCGAGATCGCCCAGCACCTGGAGAACCAGAGCGACCTGCTGCAGATGATCCGCCGCTCGCAGGAGGCCCAGGCCTGCGCCCAGGAGAGACAGGCCCAGGCTCTGGAGGGAACGCAGGCCGCCCTGCTCGCCCTCATCCAGATGTTCAGACCCGCTCTCAAGGACTTGAGGAAGTTTCTGCAGAACGCCAACAGCGCCAACACCGCTCCGCCGGCCGCCGCCGAGACCGGAGAAGGAGCGGAAAACGTGCCACCACAGACAGAAGATGCACAGtagagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagagacgGTCTGGTCCAGAATAGACCGTAAATTATTGTACAGCTCGGTGCTCATGTGTGCGAACGCTTCCCGGGATGCAGTGAAAAGAGGACTTTTACGGGCGTTTTAAACaagtggccaaaaaaaaaagatttttgactCTTTAAAGATGCTGTGAAGTCTTTTCGGTGGCTTGAAAGTCAGGTCGCGACAcgttttaattcaatttttggTGCGCAGCCGACCCTAAAGCAAACCCAGTCCGGGCCGGAGACCTACAGGAGACACGATTGCCGCGAGGACGGGCGGTGATGGACGACTTTGTGGAggctttttgtttctttagctTTCGAGAATTTGCCGTTTTTATTTAAGTACGCTAAATAAAGAAACTCCACACGTG
>XM_043246919.1
TCAATGGTAAACCTAAGCCAATGGGATTCGCAAGAGGCCACGAATGGGTGGGGCTTCAGCCATTTGCGTCCGCAAACGTTGTTGGAAGAGAAGTCGATTCAAGAAGCCATTACGCTGCGCAATAGTGTCAGGACAAAAACGTACTATTTTTACGTATTCTACGCAATTTTACATCACCCCCCCCTCCGTAAGTCCAATTAAGCACTTGCTAATGGCATCTCAGGCCAAAAAGAGGAAAACTAATTTCTCCGAAAGGGAGGTGGAGATCATCGTGGAGGAGATGGAgaagcaaaaacacattttggtgAATCACTTTAACGCGGGCGTCACGCACATCGCCAAGAACAGCGCGTGGACGGAGATCCTGAAGCGCGTGAACGCCGTGAGCACCTGCCAGCGCGAGCTCGCGGAGGTCAAGAAGAAATGGTCCGACCTCAAGACGGAGGTGCGGCGCAAAGTGGCCCAGGCGCGCGCGGCCATGGAGGGCACGGGCGACTGCGGCAGCGTTCCCGTCATCCTCAGCTCCATGCAGCAGCGCATCTGCAACCTGCTGGGAGAGGCCACCATCATCAGCCTTCCCGCGGCGGAGGCTGCCGCCGAGATCACGGTGCCCCTGGgctccgccgccgccgccgcgtTGACGCAAAGCATTCAGCCGGCGTCTGCAGCGGCGTGCGAGATAAAAACCCTTGAAGCCGAGACGACGTACCACACGCTGGAGGAGGGCATGGTGGAGTACTGCACCACCGAGGCGCCGGTGACCGTCACGGCAGAGGCTCCGGTGGAGATGCTGGCGCAGGCCGAGTGCAAGCCGCAGGAGCTGAAGAGCCGCATCGCGCTCAACTCGGCCAAGCTGCTGCAGGAGCACCGCGTCACCAACCTGCACGTGCGCGAGATCGCCCAGCACCTGGAGAACCAGAGCGACCTGCTGCAGATGATCCGCCGCTCGCAGGAGGCCCAGGCCTGCGCCCAGGAGAGACAGGCCCAGGCTCTGGAGGGAACGCAGGCCGCCCTGCTCGCCCTCATCCAGATGTTCAGACCCGCTCTCAAGGACTTGAGGAAGTTTCTGCAGAACGCCAACAGCGCCAACACCGCTCCGCCGGCCGCCGCCGAGACCGGAGAAGGAGCGGAAAACGTGCCACCACAGACAGAAGATGCACAGtagagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggagagacgGTCTGGTCCAGAATAGACCGTAAATTATTGTACAGCTCGGTGCTCATGTGTGCGAACGCTTCCCGGGATGCAGTGAAAAGAGGACTTTTACGGGCGTTTTAAACaagtggccaaaaaaaaaagatttttgactCTTTAAAGATGCTGTGAAGTCTTTTCGGTGGCTTGAAAGTCAGGTCGCGACAcgttttaattcaatttttggTGCGCAGCCGACCCTAAAGCAAACCCAGTCCGGGCCGGAGACCTACAGGAGACACGATTGCCGCGAGGACGGGCGGTGATGGACGACTTTGTGGAggctttttgtttctttagctTTCGAGAATTTGCCGTTTTTATTTAAGTACGCTAAATAAAGAAACTCCACACGTG

Function


symbol description
naif1 Predicted to act upstream of or within apoptotic process. Predicted to be active in nucleus. Orthologous to human NAIF1 (nuclear apoptosis inducing factor 1).

NR:

description
PREDICTED: nuclear apoptosis-inducing factor 1

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K23221 NAIF1; nuclear apoptosis-inducing factor 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043246917.1 True 1631 mRNA 0.57 3 2096159 2103906
XM_043246919.1 False 1600 mRNA 0.57 3 2096166 2103906

Neighbor


gene id symbol gene type direction distance location
si:ch211-51h9.7 NA coding upstream 24490 2069818 ~ 2071669 (+)
gle1 gle1,LOC107671035,LOC107699671,LOC107754403 coding upstream 26871 2061541 ~ 2069288 (+)
mrpl40 LOC107753002,LOC107559600,LOC107699643,LOC107560058,LOC107754402,LOC107671004 coding upstream 37434 2055331 ~ 2058725 (+)
enkd1 si:ch211-220d9.3,enkd1,LOC107754420,LOC107699630,LOC107657207,LOC107670972 coding upstream 81475 2006084 ~ 2014684 (+)
ikbkb ikbkb,LOC107671012,LOC107722850,LOC107754415 coding upstream 100300 1966583 ~ 1995859 (+)
fam102aa fam102aa,LOC107671017,LOC107699668,LOC107752986,LOC107754406,LOC105891604,LOC108430372 coding downstream 2484 2106390 ~ 2133931 (+)
sh3glb2a sh3glb2a,LOC107671032,LOC107754407 coding downstream 35324 2139230 ~ 2152391 (+)
crb2b LOC107754408,LOC107699666,LOC107560064,LOC107568009 coding downstream 66605 2170511 ~ 2203097 (+)
lhx2b lhx2b,lhx2 coding downstream 219693 2323599 ~ 2331771 (+)
LOC122349879 LOC107670988,LOC107552177,LOC107552180,LOC107552179,LOC107670991,LOC107754429,LOC107752990,LOC107553051 coding downstream 321413 2425319 ~ 2428603 (+)
LOC122350140 NA non-coding upstream 68831 2024562 ~ 2027328 (+)
G60288 NA non-coding upstream 93156 2000761 ~ 2003003 (+)
G60281 vdac3,LOC107671013,LOC107559564 non-coding upstream 96691 1967120 ~ 1999468 (+)
G60269 NA non-coding upstream 143033 1952793 ~ 1953126 (+)
G60265 NA non-coding upstream 145863 1947148 ~ 1950296 (+)
G60296 NA non-coding downstream 49565 2153471 ~ 2156394 (+)
G60297 LOC107568007,LOC107754426,LOC107670998,LOC107699638,LOC107560048 non-coding downstream 55408 2159314 ~ 2162044 (+)
G60323 NA non-coding downstream 59401 2163307 ~ 2165242 (+)
G60328 NA non-coding downstream 89051 2192957 ~ 2204310 (+)
G60335 NA non-coding downstream 240030 2343936 ~ 2344169 (+)
LOC122350758 dynll1,dynll2a,LOC103397138,LOC100698873,LOC107559583 other upstream 56323 2037699 ~ 2039836 (+)
LOC122350053 NA other upstream 60179 2030824 ~ 2035980 (+)
polb polb,LOC107670984,LOC107722860 other upstream 76125 2014859 ~ 2020034 (+)
G60259 LOC107560031,LOC107559593,LOC108412499,LOC107754396 other upstream 177788 1915460 ~ 1918371 (+)
pggt1b pggt1b other upstream 877355 1210815 ~ 1218804 (+)
G60788 lhfpl4b,LOC107584928,LOC107674308,LOC107743140,LOC107727430,LOC107701811,LOC103032126,LOC105898894 other downstream 1744708 3848614 ~ 3850557 (+)
LOC122350109 LOC107743114,LOC107552217,LOC107674346 other downstream 1820955 3924861 ~ 3931488 (+)
ccdc120a LOC107701815,LOC107674368,LOC107584880,LOC107727423,LOC107552222 other downstream 1925397 4029303 ~ 4073897 (+)
LOC122350082 si:ch211-240g9.1,LOC107598959,LOC107653411,LOC108438565,LOC108264952,LOC105013926,LOC100700110,LOC105889737 other downstream 3000664 5104570 ~ 5264366 (+)
LOC122350084 atp2a2,LOC107757297,LOC107674294,LOC107566800,LOC107599024,LOC108444117 other downstream 3123046 5226952 ~ 5229608 (+)

Expression



Co-expression Network