lrif1


Basic Information

Item Value
gene id lrif1
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 11223040 ~ 11228121 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246930.1
CTTTTATTCCTTATATTTCCCCCATTCATTATTCAGCACATTTGCTCTGCCTCATTTAATTCTTCCCATTCTTTCACCCCTTTACGCTTCCGAGGTTAggtgtcttttattttgatttttactttgaaaCGTATTTCCGGTGAGAGTTCAACGTCCTGTAGAAGTCAGCTTTGAAGTTGATGGATAAAATCTAACGATGCGCTAAAGAAAATATAGACAGCGGGTATTTCTTAAGGTGTAATGCCTACAGATATTCACGATGGAGGGTGGAACAGGAGTCTATTATCAAGCAATGCCTGCGGTGGGACCCGATGGGAAAAACGTCATGAAGTTAATTCCTGTCCAGAAAGTAAATGGACGGTTTTATCAGACGCCATTTAGCATAGAAAGAGACGGCATGGATGCAAAACCAGTTCATccacctgctgctgctgcttcatcTCAAACACAGATGCAGCTCCCCTCTGTTCAGTCTATAGCGGATGGACGGTATTTTCTAAAAACCCTGCCGCTGGTCGGAACTGGATCTGACACTGTCACAACTCAAAACGTCGGAACTAATGACCTCATTTTTCACAACTCAAAGCCAGTGCATGTTCCTCTTTCAGCCCAATCGCTTTCCCAGTATTCAGTCCAGTTACCTCCTAAGCCCAATAGACAGGGCATGGCGGCCGTCCAAACGTTGCCCGTTACAGTTAAATCACCTGTTCTCCCAAACGGGCATTTCCTGCAGATCCCTCCCAATGCAAAAGTTAGGACTCTGCCGGCCACTGCTCTCCCACAGTCCATCAAATGCCGCATAATGGACTCTGTGAGTAACACCCCTAACCTCCAGAACAGTCCACCTACAGTTGTGCTTGTTTCTCCTGTGAACTCTGTTAAGCTAAATTCTGACCAGCAGGTGGTGTCGCTTACAAAGCCAAGTCAAATACAGTCCCTGTTTCAAAATGTCCCTCCAAACCTCCAAACACCTGGTTGCATTCCCAAAACGAACGAAGAAGTGAACACTCCCTTAAAATGGGTCGTCCAGGAGGGAACGGGTGCGTCCGCTCCTTGCCTTGTACCTGTAACGACACCGAATGTCGACTCTGACGCCAAAAAAGCAGTCGAGCATGTCAGCTCAGTTGAGATGGCAAACGAAACTGTGACAAGCAAAGCCACACCTCCTCAGACCAGCCAAGAAAAGATCACCCAAGGCAAAGACAATGCCCTGGTCATGTGCAATGGGAAAGTCTACTTTGTGGCCAAGAAAAATTCAGAGATCGTTAAAGATGTGATGATCAGTGAAGGTGGGAAAAGGGGTGTTGTCAGCACCTCTCCTGCCCTGCCTGCCAGCTCCGCTCTGGGGACAAACCCTTCTAAGCAAGACCCCAAAAGAAAAGTGAGTGAAATTATTGATCTCTGTGATGACGGTGAGGAAACGTCCACGTGTCTGGGAGGTGCCCCGGGAAATTTGCCTACACCGAGTCAAACTGAAGTGGATGAAAGCGACGAAGACTCTAATGTTATATTTGTGTCATACATTCCACCCAAGCCAAAGACTCGTGCTGGTGACAAAGTGGACAAAGCTGAGGAAGTTCAGCACACGCAGACGATCGCAAAGTCTGTCTCTCAGAATGATGGAGAAAAACCGGCACATGCAGAAATTGAAAAAGATAGTGATCTGGATAATCCATCAACCAAAATGAGTGACGAGATGAAGGATAAGCAGGTTGAGGCAAATAAAAGAGATGAAAGCAGCTTGAGCTGTCCTTCTGAAAATGTGAATGTAGAGACGGAGAAAAAACTGGAGGGTGGACCGTCTGAGACAAGATGTCAAAATGACGCAGCTGGCGATCACACTGACAGGATTTTGAAAACAGCCCAGAAAGTCTGTGTTCAAGCCACTTCTAAAACTAAAAAGGGCTATAAAAAGCCAGACTCTGATCAGAGGAGACAACCCAAGACTGACTGCCAGCTAAGAAAAGATTTCGGCATCACCTCTGATGTAAGAATTTGCCTGCAAAGATCAAAGCTGACTGTGAAGCCAAATCAACAAACGGGGAGACTTATCATAAACAAACGCACGTTAGACGGCCTCCGTAAGGTGATCCAGAAGTCAAAGTTGcagtcaaaaatacagcaaatgaTGCAGGTTCCCTACACAAAAAAACCAGAGGAGAATGAAGGCTTGAAGGCCAAAAGAAAAAAGCTGGATGAAAGTCAAGATCATTTCTCTCCGAGCTCTACAAACCTTTCACCTGCCTCTAAATGTTCAGTTGTTGTCATTGAAAACTTTTTAGCCTGTCAAGAAGAGGTTGAATCTACAGTCGATAAGGTTGATAAGCAATCTGAAAAGCCAGCAGATTGTACTGGTAACACTAGCTGTTTTCCCTCATCTGAACAAAAAGCAAAACCGACGTCTAGTCATACCATATCACCTTCTTCTCAAAGGAAGACCCCAGCGCGCTCCAAAAAGGGTAAGGTATGCACAGCCTGTCCTTGTGGGACTGTTTTGGGGGCTACAGAAGCCACTTCATCCCTCCATTCACAATACAGACCGAATCTGGGTACTGCTGTCGAGTCGCACAAAGGGACAAGAAAAAGCTGCTTAAATAAAACCCCGGAAGAGTGTCCCCATCCTCAGAAACGCCAACAAAAAAATCCAGATCCTGTTAAGAAAGCATGGAAAAAACAGTCAAGAAATCCTCTGTTGGAAGGCTCTACTAGTCAAACCTCAAATGACATCTCGGTGAACGTTACAGCAAGTGCAGCATTGGACAACCCCAGCGCGTCATTCTCGGAAAAACCGCAAAGACCAAAAAGAGACGCATTCCCAACACAGTCACTGTACACGTTGGAGACTCTGGATGCGGAGGAGATAAAACGGCGCGAGAGAATCGAACGTTTGAAGGGTCTCCTGAAGGAGAAGGAAGCTGCGCTGGAGCGGATGCAGAGGAGCATGAACGTTTAGTCATGTCTCTTCGTTTAAAAAGGCTATGCTGCATGCCGGATTGAATATTATTGAGAAAACCACCAATAAAAACCACCaggaaaaatgtataaagtttGTACAGTGTTTATTCTGTTAAGAGTTCAgtgtcatattttattgtatttggcTGTTTATGCGTTTTGTGATGGTTGTTATTTATAGTTGGTTTTAGTATATTTAAGCAGATGCCATCGTATTATTTTTGATATCATTGTTTTACGTGcctttttataaatacttttgttttctgtagTTAAATTTATAGTGTAACAGcctcatttaatattaatacatttcgATTTCAAGAATGCTGTAAATAGCATCAACCTACTGGttaaattattctatttttGTAGTTCCATTCCTATTAAACtttcttaaaatgttgtttgttaccttgttaaattacaattttatgtgTGCTAATGCCTCAGATAtcttacatttgttttgttcagaaTTGTAAATTCTTAACCTCTTAATGTATAAACCTCTGTTCAGCTTGTTCGTTCGTTCCTACTGTGTAACAAAATATGCTGTCAGATTGTTAATGGCACGATTTGAAAATTACTATCAGACACTGGATAGccattaacctttttttttttttttttttttttgtatttatgacAACACGTTTTGGGATGTAGCAAACATTCTGCTGTGTTATAAGTAACggcaatatttcattaaaagcaaCCAAAAAGTTA

Function

NR:

description
PREDICTED: ligand-dependent nuclear receptor-interacting factor 1

GO: NA

KEGG:

id description
K23220 LRIF1; ligand-dependent nuclear receptor-interacting factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246930.1 True 3684 mRNA 0.43 4 11223040 11228121

Neighbor

gene id symbol gene type direction distance location
LOC122349917 cep104,LOC107668088,LOC107745778,LOC107695283 coding downstream 63754 11141183 ~ 11159286 (-)
LOC122349916 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 85499 11134703 ~ 11137541 (-)
c8h1orf174 cunh1orf174,LOC107731178,LOC107668010,LOC107745779,LOC107549271 coding downstream 254953 10964582 ~ 10968087 (-)
LOC122350349 nphp4,LOC107695281,LOC107550077 coding downstream 261050 10826429 ~ 10961990 (-)
LOC122349966 NA coding downstream 689702 10529443 ~ 10533338 (-)
apex2 apex2,LOC107668008,LOC107550000,LOC107695293,LOC107549375,LOC107745771 coding upstream 1208 11229329 ~ 11232003 (-)
csde1 csde1,LOC107731193,LOC107549382,LOC107695294,LOC107549999,LOC107745769,LOC107668033 coding upstream 7353 11235474 ~ 11250583 (-)
porcnl LOC107731263,LOC107549961,LOC107668005,LOC107695296,LOC107550497,LOC107745836 coding upstream 22760 11250881 ~ 11256508 (-)
magixa magixa,LOC107731248,LOC107668068,LOC107549995,LOC107695301 coding upstream 123183 11351304 ~ 11392671 (-)
emilin3a LOC107668027,LOC107731182,LOC107549958,LOC107550125,LOC107695222,LOC107745820 coding upstream 217152 11445273 ~ 11451446 (-)
G62977 NA non-coding downstream 12879 11201695 ~ 11210161 (-)
G62974 NA non-coding downstream 17667 11197153 ~ 11205373 (-)
LOC122351000 NA non-coding downstream 397989 10819217 ~ 10825051 (-)
LOC122350960 NA non-coding downstream 423077 10755389 ~ 10799963 (-)
G62861 LOC107549259,LOC107745781,LOC107668121,LOC107555602 non-coding downstream 524915 10696335 ~ 10698125 (-)
G62992 NA non-coding upstream 48238 11276359 ~ 11276914 (-)
G63014 NA non-coding upstream 178833 11406954 ~ 11441996 (-)
G63065 NA non-coding upstream 294901 11523022 ~ 11523638 (-)
G63071 NA non-coding upstream 306428 11534549 ~ 11534772 (-)
G63072 NA non-coding upstream 307922 11536043 ~ 11536517 (-)
smim1 smim1,LOC107668050 other downstream 53567 11131670 ~ 11169473 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other downstream 91802 11096140 ~ 11131238 (-)
cep104 cep104,LOC107668088,LOC107745778 other downstream 232305 10973305 ~ 10990735 (-)
trnar-ccg_26 NA other downstream 682749 10540219 ~ 10540291 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other downstream 742989 10440764 ~ 10480051 (-)
LOC122350269 LOC107549994,LOC107731173,LOC107745767,LOC107695299,LOC107668028,LOC560461,LOC107549455 other upstream 56233 11284354 ~ 11345988 (-)
G63095 NA other upstream 334157 11562278 ~ 11615925 (-)
G63274 nt5dc2,LOC107731170,LOC107549943,LOC107668043,LOC107550186,LOC107678756,LOC107745746 other upstream 550150 11778271 ~ 11779251 (-)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 823236 12051357 ~ 12054530 (-)
G63385 NA other upstream 1035573 12263694 ~ 12264533 (-)

Expression


Co-expression Network