si:dkeyp-82a1.6 (LOC107550035)


Basic Information

Item Value
gene id si:dkeyp-82a1.6
gene name LOC107550035
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 10280303 ~ 10284362 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246947.1
TTACACTGAAGTCGCTCCGACGAAGAACATCATTAATGTTCAGTTTTTCCGGTTTCGGCTGCACAGGAAAAGTAAAAACTTTGATAAGAAGtggtgaaatataaaaaaatggacTCAGGCGATTCTAAAAAAGATGGACCTACAACTAGGAGTAGAAGCTCCAGACAGGCACCCACGCAAGTTGCTAAAGGGACAACAAGGGATATAAATGAAGATGTGGGGATCGATGAGAGTGAAGACCAGGATCAGGCTTTATCTATAAAGCAACTAAAAAGATACCCAATAAAAAGAACACTGAAAATGAGGGAAGATGAGGGGGCTTCCAGAGCAGTCAATGGATCCAAGGAGTCCAAAAGTCTCACTAAGGAGGATGAGGATGAATCCCCTGTTAAGAAGCAAAAGCTTAAAGGGAAGAGAAGCGGTATAGATGAGAAAGGTGATGGTTTAAACCGAACAGATGACGCAGATATGGACACGGGTGAGAATGAAGACGAGGACGAAGCAATGAGCTCAGATGAGGGGGGCGAGTTGGACCAGGAGTCTAGCTTGACAGCCCGTCCTGGGACAGAAGACACACATCCTGCCCATGTAAGggaacaaaaacatgaatatgagGAGGTTCTTAACAGACAAAATCCTGTTCATCTAAATATTAAGGTCACTGAGATACCCAAACCCAAAGCAGGAATGCACAAGCCAGTCACAAAATATGAAGATGACTATAGTACGGGTGCTCCAGTGGAATATCAGAAAAGAGATTTTAGAAAAAGGATTAACATGAACAATCAGAATCCTATAACagagaaatataaatATCCTCCTGGTTTCGGGGGTCAGAATACATACTTAAAATCTAAACCCCAGAAGAGTTATGTCTACCCTATCATATATCAAACCAACCACAAAAACAAAGaactgaCAAGTTTGCAGCAACGAGTCGCCTTAAAAGCAAGTccagcctcctcctcctctagAGgcTGGACGTGGTACATGTGCAAGCTTCTTCTGTGGTGTGTGATATTATTGCTGGTTTTGGGTGTTTGCGGCTTTTTGGCCTATAAGAAGTTCTCGCTCTCCCATTTGTCTCAAACTGATGTGGTCCATTCTAAATCACTGGAGAAATTTGATCCAGAGTTATCAGCTCTGCGGATTCTTTTTCCAAGCCAGCGCCCTGTGTTCTGGCATAGGAGCGGGAAACATATTAAGCGCCACCTGGAGATGGTCAACCCCACTGAACCGGTCAGCGTAATTCTGACTGCTGGCCTTCAGGCTGAAAGGACATTGGGCTGTCTTGCACGAAGCTTAGCTGCAGAGTACTCTGCTACCCATAACGCTTCCATCTTAGAAATCAACGGGACCACAAAAAGAGCACAAGACAGTGACCGGGTCAAGCTGGATATAGATGAAGAGCTGAGGAAAGCATTTGAAGGTGATAAACCTGCGGCTGTCGTGCACCATTTCGAGGAGCTCCCTCCTGGATCTACGCTCATATTCTATCGTTACTGTGACCACGAAAATGCAGCTTACAAGAAGGTTTTTCTGGTTTTCACCGTGATGCTTTCGGTGAAGGAAATATCCCAGACGACCAGTCTAAGTGCCGTGGAAGACATGGTGCACGACCATATAAAACAGAAGTTTATCGTCTCAGACAAATCTACTATGTTTAATCAAATGGATGTGGATAAACTGAGTGGACTGTGGAGCAGAATTTCTCACCTCATTTTGCCGGTGGCTGCAGAAGAGAAGATTGAACAGCAGGGATGTGGGGTATAACCTCACGGAAAATCATCAGATTTTATTACTGTAGAGTTTTGAGACTAACTGGTCTAGTTCATGGACGTGCGGACcactaaaatgtacataaagaatcttttttccaaagagttttaaaaaaaaaaaaaaaagtgtttgtttataaatgtttttataaaaatgttttttgtatttgcctaaatatgtgtgtgtgaaggcagACACTTgctcatataataataattatgcatttggCATTTTATAGTAAGCGTGTTGCTTACAAtataaatcaacaaattaatTGTTGTACATAACCTTCTCAAGGCCATGTGTGGTAATGATTAAAGTTTTGCACTGATTTTTGAATTTATACTCTGAATTGCAATCAAAATTTTGTTTGGGTTTGATGTTATATATTTCCTTGACTAAGATTACAAGTCAGCTTGAGTTTATTTCTATTCTGGTTAATGCATTTTCGGTTCCTGGTTTATCGTTCAAggcattgtaaaaatatattttatgcaattaaaaaaaatgctcatttgacttaca
>XM_043246948.1
TTACACTGAAGTCGCTCCGACGAAGAACATCATTAATGTTCAGTTTTTCCGGTTTCGGCTGCACAGGAAAAGTAAAAACTTTGATAAGAAGtggtgaaatataaaaaaatggacTCAGGCGATTCTAAAAAAGATGGACCTACAACTAGGAGTAGAAGCTCCAGACAGGCACCCACGCAAGCTTTATCTATAAAGCAACTAAAAAGATACCCAATAAAAAGAACACTGAAAATGAGGGAAGATGAGGGGGCTTCCAGAGCAGTCAATGGATCCAAGGAGTCCAAAAGTCTCACTAAGGAGGATGAGGATGAATCCCCTGTTAAGAAGCAAAAGCTTAAAGGGAAGAGAAGCGGTATAGATGAGAAAGGTGATGGTTTAAACCGAACAGATGACGCAGATATGGACACGGGTGAGAATGAAGACGAGGACGAAGCAATGAGCTCAGATGAGGGGGGCGAGTTGGACCAGGAGTCTAGCTTGACAGCCCGTCCTGGGACAGAAGACACACATCCTGCCCATGTAAGggaacaaaaacatgaatatgagGAGGTTCTTAACAGACAAAATCCTGTTCATCTAAATATTAAGGTCACTGAGATACCCAAACCCAAAGCAGGAATGCACAAGCCAGTCACAAAATATGAAGATGACTATAGTACGGGTGCTCCAGTGGAATATCAGAAAAGAGATTTTAGAAAAAGGATTAACATGAACAATCAGAATCCTATAACagagaaatataaatATCCTCCTGGTTTCGGGGGTCAGAATACATACTTAAAATCTAAACCCCAGAAGAGTTATGTCTACCCTATCATATATCAAACCAACCACAAAAACAAAGaactgaCAAGTTTGCAGCAACGAGTCGCCTTAAAAGCAAGTccagcctcctcctcctctagAGgcTGGACGTGGTACATGTGCAAGCTTCTTCTGTGGTGTGTGATATTATTGCTGGTTTTGGGTGTTTGCGGCTTTTTGGCCTATAAGAAGTTCTCGCTCTCCCATTTGTCTCAAACTGATGTGGTCCATTCTAAATCACTGGAGAAATTTGATCCAGAGTTATCAGCTCTGCGGATTCTTTTTCCAAGCCAGCGCCCTGTGTTCTGGCATAGGAGCGGGAAACATATTAAGCGCCACCTGGAGATGGTCAACCCCACTGAACCGGTCAGCGTAATTCTGACTGCTGGCCTTCAGGCTGAAAGGACATTGGGCTGTCTTGCACGAAGCTTAGCTGCAGAGTACTCTGCTACCCATAACGCTTCCATCTTAGAAATCAACGGGACCACAAAAAGAGCACAAGACAGTGACCGGGTCAAGCTGGATATAGATGAAGAGCTGAGGAAAGCATTTGAAGGTGATAAACCTGCGGCTGTCGTGCACCATTTCGAGGAGCTCCCTCCTGGATCTACGCTCATATTCTATCGTTACTGTGACCACGAAAATGCAGCTTACAAGAAGGTTTTTCTGGTTTTCACCGTGATGCTTTCGGTGAAGGAAATATCCCAGACGACCAGTCTAAGTGCCGTGGAAGACATGGTGCACGACCATATAAAACAGAAGTTTATCGTCTCAGACAAATCTACTATGTTTAATCAAATGGATGTGGATAAACTGAGTGGACTGTGGAGCAGAATTTCTCACCTCATTTTGCCGGTGGCTGCAGAAGAGAAGATTGAACAGCAGGGATGTGGGGTATAACCTCACGGAAAATCATCAGATTTTATTACTGTAGAGTTTTGAGACTAACTGGTCTAGTTCATGGACGTGCGGACcactaaaatgtacataaagaatcttttttccaaagagttttaaaaaaaaaaaaaaaagtgtttgtttataaatgtttttataaaaatgttttttgtatttgcctaaatatgtgtgtgtgaaggcagACACTTgctcatataataataattatgcatttggCATTTTATAGTAAGCGTGTTGCTTACAAtataaatcaacaaattaatTGTTGTACATAACCTTCTCAAGGCCATGTGTGGTAATGATTAAAGTTTTGCACTGATTTTTGAATTTATACTCTGAATTGCAATCAAAATTTTGTTTGGGTTTGATGTTATATATTTCCTTGACTAAGATTACAAGTCAGCTTGAGTTTATTTCTATTCTGGTTAATGCATTTTCGGTTCCTGGTTTATCGTTCAAggcattgtaaaaatatattttatgcaattaaaaaaaatgctcatttgacttaca

Function

NR:

description
torsin-1A-interacting protein 2-like isoform X2

GO: NA

KEGG:

id description
K23001 TOR1AIP; torsin-1A-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246947.1 True 2304 mRNA 0.41 9 10280303 10284362
XM_043246948.1 False 2235 mRNA 0.41 8 10280303 10284362

Neighbor

gene id symbol gene type direction distance location
haus5 LOC107731222,LOC107585885,LOC107745798,LOC107695262 coding downstream 8306 10264841 ~ 10271997 (-)
LOC122349939 LOC107731225,LOC107701761,LOC107585934,LOC107745801,LOC107550447,LOC100005423 coding downstream 21111 10257145 ~ 10259192 (-)
dohh dohh,LOC107745802,LOC107548993,LOC107585881,LOC107695215 coding downstream 23353 10253890 ~ 10256950 (-)
myo1f myo1f,LOC107750961,LOC107585872,LOC107548903,LOC107731286,LOC107695252,LOC108413823 coding downstream 285195 9979636 ~ 9995108 (-)
acer1 acer1,LOC107731201,LOC107676796,LOC107585930,LOC107550428 coding downstream 303541 9970128 ~ 9976762 (-)
zgc:112962 LOC107695265,LOC107745796 coding upstream 130 10284492 ~ 10291110 (-)
LOC122350862 aldh9a1,aldh9a1a.1,aldh9a1a.2,LOC107695268,LOC107668102,LOC108441636 coding upstream 7336 10291698 ~ 10297072 (-)
tmco1 tmco1 coding upstream 13997 10298359 ~ 10300306 (-)
cpt2 cpt2,LOC107668114,LOC107585892,LOC107731280,LOC107549124,LOC107695271 coding upstream 32063 10316425 ~ 10320373 (-)
gls2a gls2a,LOC107731259,LOC107668075,LOC107549149,LOC107745788,LOC107695273,LOC107585893 coding upstream 45414 10329776 ~ 10338669 (-)
G62800 NA non-coding downstream 15542 10263818 ~ 10264761 (-)
G62795 NA non-coding downstream 27047 10250633 ~ 10253256 (-)
G62789 NA non-coding downstream 123110 10156975 ~ 10157193 (-)
G62788 NA non-coding downstream 127398 10152239 ~ 10152905 (-)
LOC122350767 NA non-coding downstream 129312 10127885 ~ 10150991 (-)
G62805 NA non-coding upstream 17300 10301662 ~ 10301885 (-)
G62817 NA non-coding upstream 41379 10325741 ~ 10327208 (-)
G62821 NA non-coding upstream 85971 10370333 ~ 10373331 (-)
G62824 cry1 non-coding upstream 97355 10381717 ~ 10443630 (-)
G62829 NA non-coding upstream 99358 10383720 ~ 10484599 (-)
smim24 smim24,LOC107580287 other downstream 32147 10245196 ~ 10248156 (-)
adamts10 adamts10,LOC107676806,LOC107585873,LOC107731268,LOC107695212,LOC107549976,LOC106613844 other downstream 238534 9995547 ~ 10041769 (-)
mllt1a mllt1a,LOC107731200,LOC107676782,LOC107695250,LOC107549968,LOC107585916 other downstream 310818 9954681 ~ 9969485 (-)
fam78bb fam78bb,LOC107717547,LOC107676968,LOC107751100,LOC107550401,LOC107585866,LOC107695225 other downstream 571682 9700394 ~ 9708621 (-)
mindy4 LOC107699968,LOC107585839,LOC107548580 other downstream 1017477 9257243 ~ 9262826 (-)
G62760 gpr37l1b,LOC107585901,LOC107731282,LOC107668115,LOC107549203,LOC107695275,LOC107745785,LOC108441645 other upstream 104821 10389183 ~ 10392043 (-)
G62826 cry1ba,LOC108265656,LOC108441644,LOC103461922,LOC105026018,LOC102226488 other upstream 156402 10440764 ~ 10480051 (-)
trnar-ccg_26 NA other upstream 255857 10540219 ~ 10540291 (-)
cep104 cep104,LOC107668088,LOC107745778 other upstream 688943 10973305 ~ 10990735 (-)
LOC122349915 nphp4,LOC107550077,LOC107695281 other upstream 811778 11096140 ~ 11131238 (-)

Expression


Co-expression Network